| Back to --- experimental! --- GPU-enabled build/check report for BioC 3.22 Report updated every 6 hours |
This page was generated on 2025-06-19 10:45 -0400 (Thu, 19 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| biocgpu | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 Patched (2025-05-01 r88189) -- "How About a Twenty-Six" | 280 |
| amarone | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 282 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1/3 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| orthos 1.7.2 (landing page) Panagiotis Papasaikas
| biocgpu | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | ERROR | ||||||||
| amarone | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
|
To the developers/maintainers of the orthos package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: orthos |
| Version: 1.7.2 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data orthos |
| StartedAt: 2025-06-19 13:52:48 -0000 (Thu, 19 Jun 2025) |
| EndedAt: 2025-06-19 13:53:16 -0000 (Thu, 19 Jun 2025) |
| EllapsedTime: 28.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data orthos
###
##############################################################################
##############################################################################
* checking for file ‘orthos/DESCRIPTION’ ... OK
* preparing ‘orthos’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘orthosIntro.Rmd’ using rmarkdown
Quitting from orthosIntro.Rmd:280-285 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `use_python()`:
! Specified version of python '/home/biocbuild/.cache/R/basilisk/1.21.5/orthos/1.7.2/orthos/bin/python' does not exist.
---
Backtrace:
▆
1. └─orthos::decomposeVar(...)
2. └─basilisk::basiliskStart(orthosenv, testload = "tensorflow")
3. └─basilisk::useBasiliskEnv(envpath, full.activation)
4. └─reticulate::use_virtualenv(envpath, required = TRUE)
5. └─reticulate::use_python(python, required = required)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'orthosIntro.Rmd' failed with diagnostics:
Specified version of python '/home/biocbuild/.cache/R/basilisk/1.21.5/orthos/1.7.2/orthos/bin/python' does not exist.
--- failed re-building ‘orthosIntro.Rmd’
SUMMARY: processing the following file failed:
‘orthosIntro.Rmd’
Error: Vignette re-building failed.
Execution halted