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GPU-enabled build/check report for BioC 3.22
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This page was generated on 2025-06-18 10:45 -0400 (Wed, 18 Jun 2025).

More about biocgpu


Hostname: biocgpu
OS: Linux (Ubuntu 24.04.2 LTS)
Arch: x86_64
Platform: x86_64-linux-gnu
R version: 4.5.0 Patched (2025-05-01 r88189) -- "How About a Twenty-Six"
R environment variables: Renviron.bioc

C compiler

R variable (VAR)Value ('R CMD config <VAR>' output)
CCgcc -std=gnu2x
CFLAGS-g -O2 -Wall -Werror=format-security
CPICFLAGS-fpic
Please refer to 'R CMD config -h' for the meaning of these variables

Compiler version ('gcc -std=gnu2x --version' output):

gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
Copyright (C) 2023 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.


C++ compiler

R variable (VAR)Value ('R CMD config <VAR>' output)
CXXg++ -std=gnu++17
CXXFLAGS-g -O2 -Wall -Werror=format-security
CXXPICFLAGS-fpic
Please refer to 'R CMD config -h' for the meaning of these variables

Compiler version ('g++ -std=gnu++17 --version' output):

g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
Copyright (C) 2023 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.


C++11 compiler

R variable (VAR)Value ('R CMD config <VAR>' output)
CXX11g++
CXX11FLAGS-g -O2 -Wall -Werror=format-security
CXX11PICFLAGS-fpic
CXX11STD-std=gnu++11
Please refer to 'R CMD config -h' for the meaning of these variables

Compiler version ('g++ --version' output):

g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
Copyright (C) 2023 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.


C++14 compiler

R variable (VAR)Value ('R CMD config <VAR>' output)
CXX14g++
CXX14FLAGS-g -O2 -Wall -Werror=format-security
CXX14PICFLAGS-fpic
CXX14STD-std=gnu++14
Please refer to 'R CMD config -h' for the meaning of these variables

Compiler version ('g++ --version' output):

g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
Copyright (C) 2023 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.


C++17 compiler

R variable (VAR)Value ('R CMD config <VAR>' output)
CXX17g++
CXX17FLAGS-g -O2 -Wall -Werror=format-security
CXX17PICFLAGS-fpic
CXX17STD-std=gnu++17
Please refer to 'R CMD config -h' for the meaning of these variables

Compiler version ('g++ --version' output):

g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
Copyright (C) 2023 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.


Java

java version ('java --version' output):

openjdk 21.0.7 2025-04-15
OpenJDK Runtime Environment (build 21.0.7+6-Ubuntu-0ubuntu124.04)
OpenJDK 64-Bit Server VM (build 21.0.7+6-Ubuntu-0ubuntu124.04, mixed mode, sharing)

Pandoc

pandoc version ('pandoc --version' output):

pandoc 3.1.3
Features: -server +lua
Scripting engine: Lua 5.4
User data directory: /home/biocbuild/.local/share/pandoc
Copyright (C) 2006-2023 John MacFarlane. Web: https://pandoc.org
This is free software; see the source for copying conditions. There is no
warranty, not even for merchantability or fitness for a particular purpose.

NVIDIA CUDA Compiler Driver

nvcc version ('nvcc --version' output):

nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2024 NVIDIA Corporation
Built on Thu_Jun__6_02:18:23_PDT_2024
Cuda compilation tools, release 12.5, V12.5.82
Build cuda_12.5.r12.5/compiler.34385749_0

NVIDIA System Management Interface

nvidia-smi version ('nvidia-smi --version' output):

Wed Jun 18 09:49:48 2025       
+---------------------------------------------------------------------------------------+
| NVIDIA-SMI 535.230.02             Driver Version: 535.230.02   CUDA Version: 12.2     |
|-----------------------------------------+----------------------+----------------------+
| GPU  Name                 Persistence-M | Bus-Id        Disp.A | Volatile Uncorr. ECC |
| Fan  Temp   Perf          Pwr:Usage/Cap |         Memory-Usage | GPU-Util  Compute M. |
|                                         |                      |               MIG M. |
|=========================================+======================+======================|
|   0  GRID A100X-10C                 On  | 00000000:04:00.0 Off |                    0 |
| N/A   N/A    P0              N/A /  N/A |      0MiB / 10240MiB |      0%      Default |
|                                         |                      |             Disabled |
+-----------------------------------------+----------------------+----------------------+
                                                                                         
+---------------------------------------------------------------------------------------+
| Processes:                                                                            |
|  GPU   GI   CI        PID   Type   Process name                            GPU Memory |
|        ID   ID                                                             Usage      |
|=======================================================================================|
|  No running processes found                                                           |
+---------------------------------------------------------------------------------------+

More information might be added in the future...