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GPU-enabled build/check report for BioC 3.22
Report updated every 6 hours

This page was generated on 2025-06-19 10:45 -0400 (Thu, 19 Jun 2025).

HostnameOSArch (*)R versionInstalled pkgs
biocgpuLinux (Ubuntu 24.04.2 LTS)x86_644.5.0 Patched (2025-05-01 r88189) -- "How About a Twenty-Six" 280
amaroneLinux (Ubuntu 24.04.2 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 282
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1/3HostnameOS / ArchINSTALLBUILDCHECK
orthos 1.7.2  (landing page)
Panagiotis Papasaikas
Snapshot Date: 2025-06-19 09:00 -0400 (Thu, 19 Jun 2025)
git_url: https://git.bioconductor.org/packages/orthos
git_branch: devel
git_last_commit: 72bb5a4
git_last_commit_date: 2025-06-06 04:38:05 -0400 (Fri, 06 Jun 2025)
biocgpuLinux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    ERROR  
amaroneLinux (Ubuntu 24.04.2 LTS) / x86_64  OK    ERROR  skipped


INSTALL results for orthos on biocgpu

To the developers/maintainers of the orthos package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: orthos
Version: 1.7.2
Command: /home/biocbuild/bbs-3.22-bioc-gpu/R/bin/R CMD INSTALL orthos
StartedAt: 2025-06-19 09:45:11 -0400 (Thu, 19 Jun 2025)
EndedAt: 2025-06-19 09:46:09 -0400 (Thu, 19 Jun 2025)
EllapsedTime: 58.1 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc-gpu/R/bin/R CMD INSTALL orthos
###
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* installing to library ‘/media/volume/biocgpu/biocbuild/bbs-3.22-bioc-gpu/R/site-library’
* installing *source* package ‘orthos’ ...
** this is package ‘orthos’ version ‘1.7.2’
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (orthos)