Franck RICHARD
| Snapshot Date: 2025-06-19 09:00 -0400 (Thu, 19 Jun 2025) |
| git_url: https://git.bioconductor.org/packages/RbowtieCuda |
| git_branch: devel |
| git_last_commit: 41bf796 |
| git_last_commit_date: 2025-04-17 16:05:49 -0400 (Thu, 17 Apr 2025) |
| Back to --- experimental! --- GPU-enabled build/check report for BioC 3.22 Report updated every 6 hours |
This page was generated on 2025-06-19 10:45 -0400 (Thu, 19 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| biocgpu | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 Patched (2025-05-01 r88189) -- "How About a Twenty-Six" | 280 |
| amarone | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 282 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2/3 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| RbowtieCuda 1.1.1 (landing page) Franck RICHARD
| biocgpu | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | | |||||||
| amarone | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
|
To the developers/maintainers of the RbowtieCuda package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RbowtieCuda |
| Version: 1.1.1 |
| Command: /home/biocbuild/bbs-3.22-bioc-gpu/R/bin/R CMD INSTALL RbowtieCuda |
| StartedAt: 2025-06-19 09:45:11 -0400 (Thu, 19 Jun 2025) |
| EndedAt: 2025-06-19 09:49:49 -0400 (Thu, 19 Jun 2025) |
| EllapsedTime: 278.1 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc-gpu/R/bin/R CMD INSTALL RbowtieCuda ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/biocgpu/biocbuild/bbs-3.22-bioc-gpu/R/site-library’ * installing *source* package ‘RbowtieCuda’ ... ** this is package ‘RbowtieCuda’ version ‘1.1.1’ ** using staged installation ** libs cd "../src/nvbio/build" && rm -f CMakeCache.txt && cmake .. -- The C compiler identification is GNU 13.3.0 -- The CXX compiler identification is GNU 13.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found CUDAToolkit: /software/u24/nvhpc/24.7/Linux_x86_64/24.7/cuda/12.5/targets/x86_64-linux/include (found version "12.5.82") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Building Release -- Found libcudacxx: /usr/share/cmake/libcudacxx/libcudacxx-config.cmake (found suitable version "1.9.0.0", minimum required is "1.8.0") -- Found Thrust: /usr/share/cmake/thrust/thrust-config.cmake (found version "2.0.1.0") -- Found CUB: /usr/share/cmake/cub/cub-config.cmake (found version "2.0.1.0") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- The CUDA compiler identification is NVIDIA 12.5.82 -- Detecting CUDA compiler ABI info -- Detecting CUDA compiler ABI info - done -- Check for working CUDA compiler: /software/u24/nvhpc/24.7/Linux_x86_64/24.7/compilers/bin/nvcc - skipped -- Detecting CUDA compile features -- Detecting CUDA compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of off64_t -- Check size of off64_t - done -- Looking for fseeko -- Looking for fseeko - found -- Looking for unistd.h -- Looking for unistd.h - found -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Configuring done (4.8s) -- Generating done (0.0s) -- Build files have been written to: /media/volume/biocgpu/biocbuild/bbs-3.22-bioc-gpu/meat/RbowtieCuda/src/nvbio/build (cd "../src/nvbio/build" && make) make[1]: Entering directory '/media/volume/biocgpu/biocbuild/bbs-3.22-bioc-gpu/meat/RbowtieCuda/src/nvbio/build' make[2]: Entering directory '/media/volume/biocgpu/biocbuild/bbs-3.22-bioc-gpu/meat/RbowtieCuda/src/nvbio/build' make[3]: Entering directory '/media/volume/biocgpu/biocbuild/bbs-3.22-bioc-gpu/meat/RbowtieCuda/src/nvbio/build' make[3]: Entering directory '/media/volume/biocgpu/biocbuild/bbs-3.22-bioc-gpu/meat/RbowtieCuda/src/nvbio/build' make[3]: Entering directory '/media/volume/biocgpu/biocbuild/bbs-3.22-bioc-gpu/meat/RbowtieCuda/src/nvbio/build' make[3]: Entering directory '/media/volume/biocgpu/biocbuild/bbs-3.22-bioc-gpu/meat/RbowtieCuda/src/nvbio/build' make[3]: Entering directory '/media/volume/biocgpu/biocbuild/bbs-3.22-bioc-gpu/meat/RbowtieCuda/src/nvbio/build' make[3]: Entering directory '/media/volume/biocgpu/biocbuild/bbs-3.22-bioc-gpu/meat/RbowtieCuda/src/nvbio/build' make[3]: Entering directory '/media/volume/biocgpu/biocbuild/bbs-3.22-bioc-gpu/meat/RbowtieCuda/src/nvbio/build' make[3]: 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building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RbowtieCuda)