Franck RICHARD
| Snapshot Date: 2025-06-19 09:00 -0400 (Thu, 19 Jun 2025) |
| git_url: https://git.bioconductor.org/packages/RbowtieCuda |
| git_branch: devel |
| git_last_commit: 41bf796 |
| git_last_commit_date: 2025-04-17 16:05:49 -0400 (Thu, 17 Apr 2025) |
| Back to --- experimental! --- GPU-enabled build/check report for BioC 3.22 Report updated every 6 hours |
This page was generated on 2025-06-19 10:45 -0400 (Thu, 19 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| biocgpu | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 Patched (2025-05-01 r88189) -- "How About a Twenty-Six" | 280 |
| amarone | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 282 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2/3 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| RbowtieCuda 1.1.1 (landing page) Franck RICHARD
| biocgpu | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | | |||||||
| amarone | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
|
To the developers/maintainers of the RbowtieCuda package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RbowtieCuda |
| Version: 1.1.1 |
| Command: /home/biocbuild/bbs-3.22-bioc-gpu/R/bin/R CMD build --keep-empty-dirs --no-resave-data RbowtieCuda |
| StartedAt: 2025-06-19 09:51:42 -0400 (Thu, 19 Jun 2025) |
| EndedAt: 2025-06-19 09:56:29 -0400 (Thu, 19 Jun 2025) |
| EllapsedTime: 287.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: RbowtieCuda_1.1.1.tar.gz |
| PackageFileSize: 28.74 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc-gpu/R/bin/R CMD build --keep-empty-dirs --no-resave-data RbowtieCuda ### ############################################################################## ############################################################################## * checking for file ‘RbowtieCuda/DESCRIPTION’ ... OK * preparing ‘RbowtieCuda’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... OK * cleaning src * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/3.28.3/CompilerIdC/tmp’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/3.28.3/CompilerIdCXX/tmp’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/CMakeScratch’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/pkgRedirects’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/contrib/moderngpu/CMakeFiles/moderngpu.dir/src’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvBowtie/CMakeFiles/nvBowtie.dir/bowtie2/cuda’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/basic/cuda’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/fmindex’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/fmindex’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/output’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/reads’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/sequence’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/sufsort’ is empty * building ‘RbowtieCuda_1.1.1.tar.gz’ Warning: file 'RbowtieCuda/src/nvbio/contrib/zlib-1.2.7/configure' did not have execute permissions: corrected