| Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-04-09 11:55 -0400 (Wed, 09 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 beta (2025-04-02 r88102) -- "How About a Twenty-Six" | 4737 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-03 r88103 ucrt) -- "How About a Twenty-Six" | 4524 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1702/2335 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RbowtieCuda 0.99.0 (landing page) Franck RICHARD
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the RbowtieCuda package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RbowtieCuda.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RbowtieCuda |
| Version: 0.99.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 RbowtieCuda |
| StartedAt: 2025-04-08 18:53:08 -0400 (Tue, 08 Apr 2025) |
| EndedAt: 2025-04-08 18:53:10 -0400 (Tue, 08 Apr 2025) |
| EllapsedTime: 2.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 RbowtieCuda
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* checking for file ‘RbowtieCuda/DESCRIPTION’ ... OK
* preparing ‘RbowtieCuda’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
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* installing *source* package ‘RbowtieCuda’ ...
** this is package ‘RbowtieCuda’ version ‘0.99.0’
** using staged installation
** libs
cd "../src/nvbio/build" && rm -f CMakeCache.txt && cmake ..
-- The C compiler identification is GNU 13.3.0
-- The CXX compiler identification is GNU 13.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Error at /usr/share/cmake-3.28/Modules/FindCUDAToolkit.cmake:855 (message):
Could not find nvcc, please set CUDAToolkit_ROOT.
Call Stack (most recent call first):
CMakeLists.txt:11 (find_package)
-- Configuring incomplete, errors occurred!
make: *** [Makefile:10: all] Error 1
ERROR: compilation failed for package ‘RbowtieCuda’
* removing ‘/tmp/RtmpDfFtwc/Rinst22de991e6764fb/RbowtieCuda’
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ERROR: package installation failed