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INSTALL report for slingshot on tokay2

This page was generated on 2019-10-16 12:41:38 -0400 (Wed, 16 Oct 2019).

Package 1540/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
slingshot 1.2.0
Kelly Street
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/slingshot
Branch: RELEASE_3_9
Last Commit: b8962fe
Last Changed Date: 2019-05-02 11:54:12 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: slingshot
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/slingshot_1.2.0.tar.gz && rm -rf slingshot.buildbin-libdir && mkdir slingshot.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=slingshot.buildbin-libdir slingshot_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL slingshot_1.2.0.zip && rm slingshot_1.2.0.tar.gz slingshot_1.2.0.zip
StartedAt: 2019-10-15 21:07:43 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 21:09:04 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 80.9 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/slingshot_1.2.0.tar.gz && rm -rf slingshot.buildbin-libdir && mkdir slingshot.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=slingshot.buildbin-libdir slingshot_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL slingshot_1.2.0.zip && rm slingshot_1.2.0.tar.gz slingshot_1.2.0.zip
###
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install for i386

* installing *source* package 'slingshot' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'slingshot'
    finding HTML links ... done
    SlingshotDataSet-class                  html  
    SlingshotDataSet                        html  
    getCurves                               html  
    getLineages                             html  
    finding level-2 HTML links ... done

    newSlingshotDataSet                     html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpW6ZUru/R.INSTALL2be86a7514b7/slingshot/man/newSlingshotDataSet.Rd:51: file link 'principal.curve' in package 'princurve' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpW6ZUru/R.INSTALL2be86a7514b7/slingshot/man/newSlingshotDataSet.Rd:94: file link 'principal.curve' in package 'princurve' does not exist and so has been treated as a topic
    pairs-SlingshotDataSet                  html  
    plot-SlingshotDataSet                   html  
    plot3d-SlingshotDataSet                 html  
    plotGenePseudotime                      html  
    predict.SlingshotDataSet                html  
    slingAdjacency                          html  
    slingCurves                             html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpW6ZUru/R.INSTALL2be86a7514b7/slingshot/man/slingCurves.Rd:21: file link 'principal.curve' in package 'princurve' does not exist and so has been treated as a topic
    slingLineages                           html  
    slingParams                             html  
    slingPseudotime                         html  
    slingshot                               html  
    slingshotExample                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'slingshot' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'slingshot' as slingshot_1.2.0.zip
* DONE (slingshot)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'slingshot' successfully unpacked and MD5 sums checked