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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:monaLisa.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings monaLisa_1.1.1.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/monaLisa.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'monaLisa/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'monaLisa' version '1.1.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'monaLisa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL monaLisa
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'monaLisa' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'monaLisa'
    finding HTML links ... done
    annoSeqlogo                             html  
    bin                                     html  
    calcBinnedKmerEnr                       html  
    calcBinnedMotifEnrHomer                 html  
    calcBinnedMotifEnrR                     html  
    dot-calcKmerEnrichment                  html  
    dot-calcMotifEnrichment                 html  
    dot-calculateGCweight                   html  
    dot-checkDfValidity                     html  
    dot-checkIfSeqsAreEqualLength           html  
    dot-cons2matrix                         html  
    dot-defineBackground                    html  
    dot-filterSeqs                          html  
    dot-glmnetRandomizedLasso               html  
    dot-iterativeNormForKmers               html  
    dot-normForKmers                        html  
    dumpJaspar                              html  
    findHomer                               html  
    findMotifHits-methods                   html  
    getColsByBin                            html  
    getKmerFreq                             html  
    finding level-2 HTML links ... done

    getSetZeroBin                           html  
    homerToPFMatrixList                     html  
    monaLisa-package                        html  
    motifKmerSimilarity                     html  
    motifSimilarity                         html  
    parseHomerOutput                        html  
    plotBinDensity                          html  
    plotBinDiagnostics                      html  
    plotBinHist                             html  
    plotBinScatter                          html  
    plotMotifHeatmaps                       html  
    plotSelectionProb                       html  
    plotStabilityPaths                      html  
    prepareHomer                            html  
    randLassoStabSel                        html  
    sampleRandomRegions                     html  
    seqLogoGrob                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (monaLisa)
Making 'packages.html' ... done

R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(monaLisa)

> 
> test_check("monaLisa")
[ FAIL 0 | WARN 1 | SKIP 2 | PASS 536 ]

== Skipped tests ===============================================================
* On Windows (1)
* empty test (1)

[ FAIL 0 | WARN 1 | SKIP 2 | PASS 536 ]
> 
> proc.time()
   user  system elapsed 
  30.70    1.09   31.82