| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:20:33 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the monaLisa package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/monaLisa.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1225/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| monaLisa 1.2.0 (landing page) Michael Stadler
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: monaLisa |
| Version: 1.2.0 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:monaLisa.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings monaLisa_1.2.0.tar.gz |
| StartedAt: 2022-10-18 20:41:05 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 20:46:23 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 317.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: monaLisa.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:monaLisa.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings monaLisa_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/monaLisa.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘monaLisa/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘monaLisa’ version ‘1.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘monaLisa’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
monaLisa.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL monaLisa ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘monaLisa’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (monaLisa)
monaLisa.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(monaLisa)
>
> test_check("monaLisa")
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 537 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• empty test (1)
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 537 ]
>
> proc.time()
user system elapsed
41.762 4.067 43.351
monaLisa.Rcheck/monaLisa-Ex.timings
| name | user | system | elapsed | |
| annoSeqlogo | 0.141 | 0.013 | 0.153 | |
| bin | 0.007 | 0.000 | 0.007 | |
| calcBinnedKmerEnr | 0.723 | 0.039 | 0.763 | |
| calcBinnedMotifEnrHomer | 0.004 | 0.000 | 0.004 | |
| calcBinnedMotifEnrR | 1.818 | 0.160 | 1.978 | |
| dumpJaspar | 0.025 | 0.000 | 0.025 | |
| findHomer | 0.004 | 0.000 | 0.004 | |
| findMotifHits-methods | 0.223 | 0.004 | 0.226 | |
| getColsByBin | 0.005 | 0.000 | 0.005 | |
| getKmerFreq | 0.026 | 0.000 | 0.026 | |
| getSetZeroBin | 0.002 | 0.000 | 0.002 | |
| homerToPFMatrixList | 0.051 | 0.000 | 0.052 | |
| motifKmerSimilarity | 0.02 | 0.00 | 0.02 | |
| motifSimilarity | 0.008 | 0.000 | 0.007 | |
| parseHomerOutput | 0.01 | 0.00 | 0.01 | |
| plotBinDensity | 0.012 | 0.000 | 0.012 | |
| plotBinDiagnostics | 0.528 | 0.099 | 0.627 | |
| plotBinHist | 0.008 | 0.000 | 0.008 | |
| plotBinScatter | 0.003 | 0.003 | 0.007 | |
| plotMotifHeatmaps | 3.752 | 0.104 | 3.859 | |
| plotSelectionProb | 0.867 | 0.019 | 0.887 | |
| plotStabilityPaths | 0.583 | 0.025 | 0.607 | |
| prepareHomer | 0.045 | 0.008 | 0.053 | |
| randLassoStabSel | 0.658 | 0.083 | 1.187 | |
| sampleRandomRegions | 0.745 | 0.353 | 0.051 | |
| seqLogoGrob | 0.192 | 0.015 | 0.208 | |