| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:27:17 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the cytofast package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 415/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cytofast 1.6.0 (landing page) K.A. Stam
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: cytofast |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:cytofast.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings cytofast_1.6.0.tar.gz |
| StartedAt: 2021-05-06 00:37:24 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 00:39:28 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 123.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cytofast.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:cytofast.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings cytofast_1.6.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/cytofast.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cytofast/DESCRIPTION’ ... OK
* this is package ‘cytofast’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cytofast’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
cfList-class 5.18 0.044 5.228
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
cytofast.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL cytofast ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘cytofast’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘expr’ in package ‘cytofast’ ** help Loading required namespace: cytofast *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cytofast)
cytofast.Rcheck/cytofast-Ex.timings
| name | user | system | elapsed | |
| cellCounts | 0.400 | 0.004 | 0.466 | |
| cfList-class | 5.180 | 0.044 | 5.228 | |
| cytoBoxplots | 1.540 | 0.000 | 1.542 | |
| cytoHeatmaps | 1.484 | 0.000 | 1.487 | |
| cytottest | 0.280 | 0.000 | 0.282 | |
| drawTree | 0.380 | 0.000 | 0.378 | |
| msiPlot | 1.916 | 0.000 | 1.915 | |
| readCytosploreFCS | 0.280 | 0.004 | 0.286 | |