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BUILD BIN report for DESeq on tokay2

This page was generated on 2020-03-12 13:58:50 -0400 (Thu, 12 Mar 2020).

Package 449/1838HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq 1.39.0
Simon Anders
Snapshot Date: 2020-03-11 16:45:12 -0400 (Wed, 11 Mar 2020)
URL: https://git.bioconductor.org/packages/DESeq
Branch: master
Last Commit: e51de49
Last Changed Date: 2019-10-29 13:35:12 -0400 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: DESeq
Version: 1.39.0
Command: rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DESeq.buildbin-libdir DESeq_1.39.0.tar.gz
StartedAt: 2020-03-12 11:46:15 -0400 (Thu, 12 Mar 2020)
EndedAt: 2020-03-12 11:47:07 -0400 (Thu, 12 Mar 2020)
EllapsedTime: 52.7 seconds
RetCode: 0
Status:  OK  
PackageFile: DESeq_1.39.0.zip
PackageFileSize: 1.562 MiB

Command output

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### Running command:
###
###   rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DESeq.buildbin-libdir DESeq_1.39.0.tar.gz
###
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install for i386

* installing *source* package 'DESeq' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
    double esttotalperlength = total/2;
           ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DESeq.dll tmp.def pval.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/DESeq.buildbin-libdir/00LOCK-DESeq/00new/DESeq/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DESeq'
    finding HTML links ... done
    CountDataSet-class                      html  
    adjustScvForBias                        html  
    conditions                              html  
    counts                                  html  
    dispTable                               html  
    estimateDispersions                     html  
    estimateSizeFactors                     html  
    estimateSizeFactorsForMatrix            html  
    estimateVarianceFunctions               html  
    fitInfo                                 html  
    fitNbinomGLMs                           html  
    fitNbinomGLMsForMatrix                  html  
    getBaseMeansAndVariances                html  
    getVarianceStabilizedData               html  
    makeExampleCountDataSet                 html  
    nbinomGLMTest                           html  
    nbinomTest                              html  
    nbinomTestForMatrices                   html  
    nbkd.sf                                 html  
    newCountDataSet                         html  
    newCountDataSetFromHTSeqCount           html  
    plotDispEsts                            html  
    plotMA                                  html  
    plotPCA                                 html  
    residualsEcdfPlot                       html  
    scvPlot                                 html  
    sizeFactors                             html  
    varianceFitDiagnostics                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DESeq' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
    double esttotalperlength = total/2;
           ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DESeq.dll tmp.def pval.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/DESeq.buildbin-libdir/DESeq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DESeq' as DESeq_1.39.0.zip
* DONE (DESeq)