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BUILD report for DESeq on tokay2

This page was generated on 2020-10-17 11:56:26 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE DESeq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 459/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq 1.40.0
Simon Anders
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/DESeq
Branch: RELEASE_3_11
Last Commit: 4819d95
Last Changed Date: 2020-04-27 14:20:51 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: DESeq
Version: 1.40.0
Command: chmod a+r DESeq -R && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DESeq
StartedAt: 2020-10-16 21:06:14 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 21:06:40 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 25.7 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r DESeq -R && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DESeq
###
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* checking for file 'DESeq/DESCRIPTION' ... OK
* preparing 'DESeq':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'DESeq.Rnw' using Sweave

Error: processing vignette 'DESeq.Rnw' failed with diagnostics:
 chunk 8 (label = conditionCheck) 
Error : identical(condition, factor(c("untreated", "untreated", "treated",  .... is not TRUE

--- failed re-building 'DESeq.Rnw'

SUMMARY: processing the following file failed:
  'DESeq.Rnw'

Error: Vignette re-building failed.
Execution halted