| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:54:39 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE DESeq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 459/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Simon Anders
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | ERROR | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped |
| Package: DESeq |
| Version: 1.40.0 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL DESeq |
| StartedAt: 2020-10-16 16:18:04 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 16:18:22 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 17.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL DESeq
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘DESeq’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c pval.c -o pval.o
pval.c: In function ‘add_from_both_sides’:
pval.c:26:11: warning: unused variable ‘esttotalperlength’ [-Wunused-variable]
double esttotalperlength = total/2;
^~~~~~~~~~~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o DESeq.so pval.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-DESeq/00new/DESeq/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
** testing if installed package keeps a record of temporary installation path
* DONE (DESeq)