Workflows build report for BioC 3.21 - BUILD results for methylationArrayAnalysis on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4821
palomino7	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4563
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4601
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for methylationArrayAnalysis on palomino7

To the developers/maintainers of the methylationArrayAnalysis package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: methylationArrayAnalysis

Version: 1.32.0

Command: chmod a+r methylationArrayAnalysis -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis

StartedAt: 2025-07-22 13:10:28 -0400 (Tue, 22 Jul 2025)

EndedAt: 2025-07-22 13:19:47 -0400 (Tue, 22 Jul 2025)

EllapsedTime: 559.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r methylationArrayAnalysis -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
###
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* checking for file 'methylationArrayAnalysis/DESCRIPTION' ... OK
* preparing 'methylationArrayAnalysis':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'methylationArrayAnalysis.Rmd' using rmarkdown

Quitting from methylationArrayAnalysis.Rmd:514-523 [gentracks]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'table' in selecting a method for function '%in%': attempt to set an attribute on NULL
---
Backtrace:
     ▆
  1. ├─Gviz::UcscTrack(...)
  2. │ └─Gviz:::.cacheTracks(...)
  3. │   ├─Gviz::.doCache(...)
  4. │   │ ├─BiocGenerics::eval(expression, envir = callEnv)
  5. │   │ └─base::eval(expression, envir = callEnv)
  6. │   │   └─base::eval(expression, envir = callEnv)
  7. │   ├─rtracklayer::ucscTableQuery(session, track)
  8. │   └─rtracklayer::ucscTableQuery(session, track)
  9. │     ├─rtracklayer::ucscTableQuery(genome(x), ...)
 10. │     └─rtracklayer::ucscTableQuery(genome(x), ...)
 11. │       └─rtracklayer (local) .local(x, ...)
 12. │         ├─rtracklayer::`tableName<-`(`*tmp*`, check = check, value = table)
 13. │         └─rtracklayer::`tableName<-`(`*tmp*`, check = check, value = table)
 14. │           └─rtracklayer (local) .local(x, ..., value = value)
 15. │             └─rtracklayer:::normArgTable(value, x)
 16. │               ├─name %in% tableNames(query)
 17. │               ├─rtracklayer::tableNames(query)
 18. │               └─rtracklayer::tableNames(query)
 19. │                 └─rtracklayer (local) .local(object, ...)
 20. │                   └─rtracklayer::ucscTables(object@genome, object@track)
 21. │                     └─rtracklayer:::ucscTableTracks(genome)
 22. └─base::.handleSimpleError(...)
 23.   └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'methylationArrayAnalysis.Rmd' failed with diagnostics:
error in evaluating the argument 'table' in selecting a method for function '%in%': attempt to set an attribute on NULL
--- failed re-building 'methylationArrayAnalysis.Rmd'

SUMMARY: processing the following file failed:
  'methylationArrayAnalysis.Rmd'

Error: Vignette re-building failed.
Execution halted