Rapid builds (Linux only) of a subset of BioC 3.22<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	896
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INSTALL results for ggbio on teran2

To the developers/maintainers of the ggbio package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ggbio

Version: 1.59.0

Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD INSTALL ggbio

StartedAt: 2025-10-30 12:24:04 -0400 (Thu, 30 Oct 2025)

EndedAt: 2025-10-30 12:24:05 -0400 (Thu, 30 Oct 2025)

EllapsedTime: 0.2 seconds

RetCode: 1

Status: ERROR

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD INSTALL ggbio
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* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/R/site-library’
ERROR: dependencies ‘biovizBase’, ‘GenomicAlignments’, ‘BSgenome’, ‘VariantAnnotation’, ‘rtracklayer’, ‘GenomicFeatures’, ‘OrganismDbi’, ‘ensembldb’ are not available for package ‘ggbio’
Perhaps try a variation of:
install.packages(c('biovizBase', 'GenomicAlignments', 'BSgenome', 'VariantAnnotation', 'rtracklayer', 'GenomicFeatures', 'OrganismDbi', 'ensembldb'))
* removing ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/R/site-library/ggbio’