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This page was generated on 2025-10-30 14:25 -0400 (Thu, 30 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 896
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Package 87/229HostnameOS / ArchINSTALLBUILDCHECK
fishpond 2.17.0  (landing page)
Michael Love
Snapshot Date: 2025-10-30 12:00 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/fishpond
git_branch: devel
git_last_commit: 2293072
git_last_commit_date: 2025-10-29 10:50:11 -0400 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for fishpond on teran2

To the developers/maintainers of the fishpond package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: fishpond
Version: 2.17.0
Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data fishpond
StartedAt: 2025-10-30 12:36:27 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 12:36:52 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 25.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data fishpond
###
##############################################################################
##############################################################################


* checking for file ‘fishpond/DESCRIPTION’ ... OK
* preparing ‘fishpond’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘allelic.Rmd’ using rmarkdown

Quitting from allelic.Rmd:135-142 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ensembldb'
---
Backtrace:
    ▆
 1. ├─base::suppressPackageStartupMessages(library(ensembldb))
 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
 3. └─base::library(ensembldb)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'allelic.Rmd' failed with diagnostics:
there is no package called 'ensembldb'
--- failed re-building ‘allelic.Rmd’

--- re-building ‘swish.Rmd’ using rmarkdown

Quitting from swish.Rmd:175-196 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tximeta'
---
Backtrace:
    ▆
 1. └─base::library(tximeta)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'swish.Rmd' failed with diagnostics:
there is no package called 'tximeta'
--- failed re-building ‘swish.Rmd’

SUMMARY: processing the following files failed:
  ‘allelic.Rmd’ ‘swish.Rmd’

Error: Vignette re-building failed.
Execution halted