Rapid builds (Linux only) of a subset of BioC 3.22<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	896
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BUILD results for Rsamtools on teran2

To the developers/maintainers of the Rsamtools package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Rsamtools

Version: 2.27.0

Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsamtools

StartedAt: 2025-10-30 13:00:27 -0400 (Thu, 30 Oct 2025)

EndedAt: 2025-10-30 13:01:03 -0400 (Thu, 30 Oct 2025)

EllapsedTime: 36.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsamtools
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* checking for file ‘Rsamtools/DESCRIPTION’ ... OK
* preparing ‘Rsamtools’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Rsamtools-Overview.Rmd’ using rmarkdown

Quitting from Rsamtools-Overview.Rmd:303-315 [txdb-transcripts]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package 'GenomicFeatures' required by 'TxDb.Hsapiens.UCSC.hg18.knownGene' could not be found
---
Backtrace:
    ▆
 1. └─base::library(TxDb.Hsapiens.UCSC.hg18.knownGene)
 2.   └─base::.getRequiredPackages2(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Rsamtools-Overview.Rmd' failed with diagnostics:
package 'GenomicFeatures' required by 'TxDb.Hsapiens.UCSC.hg18.knownGene' could not be found
--- failed re-building ‘Rsamtools-Overview.Rmd’

SUMMARY: processing the following file failed:
  ‘Rsamtools-Overview.Rmd’

Error: Vignette re-building failed.
Execution halted