Pierrick Roger
| Snapshot Date: 2025-09-25 13:40 -0400 (Thu, 25 Sep 2025) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_21 |
| git_last_commit: a7f0a0f |
| git_last_commit_date: 2025-04-15 12:42:50 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-09-29 11:37 -0400 (Mon, 29 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4827 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4608 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4549 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4580 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 207/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.14.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.14.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings biodbHmdb_1.14.0.tar.gz |
| StartedAt: 2025-09-28 21:24:58 -0400 (Sun, 28 Sep 2025) |
| EndedAt: 2025-09-28 21:27:14 -0400 (Sun, 28 Sep 2025) |
| EllapsedTime: 136.4 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings biodbHmdb_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs
See
‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
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###
### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.14.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-09-28 21:25:46.755][biodb::testContext]
biodb.INFO [2025-09-28 21:25:46.757][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-28 21:25:46.758][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-09-28 21:25:46.759][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-28 21:25:46.760][biodb::testContext]
biodb.INFO [2025-09-28 21:25:46.762][biodb::testThat]
biodb.INFO [2025-09-28 21:25:46.763][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2025-09-28 21:25:46.763][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:25:46.764][biodb::testThat]
biodb.INFO [2025-09-28 21:25:46.847][biodb::testContext]
biodb.INFO [2025-09-28 21:25:46.848][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-28 21:25:46.849][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-09-28 21:25:46.850][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-28 21:25:46.851][biodb::testContext]
biodb.INFO [2025-09-28 21:25:46.858][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-09-28 21:25:46.860][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-09-28 21:25:46.867][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-28 21:25:46.868][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-28 21:25:46.869][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-28 21:25:46.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.873][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-28 21:25:46.897][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-28 21:25:46.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.901][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-28 21:25:46.902][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-28 21:25:46.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.905][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-28 21:25:46.906][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-28 21:25:46.907][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-28 21:25:46.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.911][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-28 21:25:46.912][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-28 21:25:46.913][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-28 21:25:46.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.916][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-28 21:25:46.917][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-28 21:25:46.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.921][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-28 21:25:46.922][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-28 21:25:46.923][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-28 21:25:46.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.931][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-28 21:25:46.932][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-28 21:25:46.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.936][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-28 21:25:46.937][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-28 21:25:46.938][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-28 21:25:46.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.942][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-28 21:25:46.943][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-28 21:25:46.944][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-28 21:25:46.945][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-28 21:25:46.946][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-28 21:25:46.947][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-28 21:25:46.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.951][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-28 21:25:46.953][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-28 21:25:46.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.957][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-28 21:25:46.958][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-28 21:25:46.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.962][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-28 21:25:46.963][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-28 21:25:46.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.967][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-28 21:25:46.968][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-09-28 21:25:46.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.972][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-28 21:25:46.973][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-28 21:25:46.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.977][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-28 21:25:46.979][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-28 21:25:46.984][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-28 21:25:46.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.988][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-28 21:25:46.989][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-28 21:25:46.991][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-28 21:25:46.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:46.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:46.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:46.998][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-28 21:25:47.036][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.054][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-28 21:25:47.055][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.056][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:25:47.057][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.058][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.059][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.060][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.061][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-28 21:25:47.062][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:25:47.064][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.065][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-28 21:25:47.066][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:25:47.067][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.068][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.069][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-28 21:25:47.069][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-28 21:25:47.069][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-28 21:25:47.069][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-28 21:25:47.069][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-28 21:25:47.082][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-28 21:25:47.083][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:25:47.084][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:25:47.085][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:25:47.086][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:25:47.087][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:25:47.088][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.089][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.090][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:25:47.091][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:25:47.092][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.093][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.095][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-28 21:25:47.096][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.097][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-28 21:25:47.098][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.100][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:25:47.101][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.102][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.103][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.104][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.105][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-28 21:25:47.106][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:25:47.107][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.108][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-28 21:25:47.109][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:25:47.110][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.112][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.113][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-28 21:25:47.113][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-28 21:25:47.113][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-28 21:25:47.113][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-28 21:25:47.113][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-28 21:25:47.114][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-28 21:25:47.115][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:25:47.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:25:47.117][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:25:47.118][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:25:47.119][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:25:47.120][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.121][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.122][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:25:47.123][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:25:47.124][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.125][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.126][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-28 21:25:47.128][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.129][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-28 21:25:47.130][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.131][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:25:47.133][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.134][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.135][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.135][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.136][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-28 21:25:47.137][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:25:47.138][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.139][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-28 21:25:47.140][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:25:47.141][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.142][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.143][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.144][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-28 21:25:47.145][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:25:47.146][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:25:47.147][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:25:47.148][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:25:47.149][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:25:47.150][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.151][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.152][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:25:47.153][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:25:47.154][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.155][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.156][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-28 21:25:47.157][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.158][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-28 21:25:47.159][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.160][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:25:47.161][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.162][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.163][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.164][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.165][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-28 21:25:47.166][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:25:47.167][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.168][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-28 21:25:47.169][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:25:47.170][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.171][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.172][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.173][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-28 21:25:47.174][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:25:47.175][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:25:47.176][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:25:47.177][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:25:47.178][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:25:47.179][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.180][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.181][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:25:47.182][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:25:47.183][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.184][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.187][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-28 21:25:47.188][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.270][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-28 21:25:47.274][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-28 21:25:47.275][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-28 21:25:47.277][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-28 21:25:47.278][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-28 21:25:47.279][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-28 21:25:47.281][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-28 21:25:47.282][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-28 21:25:47.283][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-28 21:25:47.285][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-28 21:25:47.286][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-28 21:25:47.287][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-28 21:25:47.289][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-28 21:25:47.290][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-28 21:25:47.291][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-28 21:25:47.293][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-28 21:25:47.294][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-28 21:25:47.295][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-28 21:25:47.297][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-28 21:25:47.298][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-28 21:25:47.300][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-28 21:25:47.301][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-28 21:25:47.302][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-28 21:25:47.304][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-28 21:25:47.305][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-28 21:25:47.306][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-28 21:25:47.308][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-28 21:25:47.309][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-28 21:25:47.311][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-28 21:25:47.312][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-28 21:25:47.313][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-28 21:25:47.315][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-28 21:25:47.316][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-28 21:25:47.317][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-28 21:25:47.319][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-28 21:25:47.320][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-28 21:25:47.321][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-28 21:25:47.323][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-28 21:25:47.324][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-28 21:25:47.325][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-28 21:25:47.327][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-28 21:25:47.328][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-28 21:25:47.329][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-28 21:25:47.331][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-28 21:25:47.332][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-28 21:25:47.334][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-28 21:25:47.335][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-28 21:25:47.336][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-28 21:25:47.338][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-28 21:25:47.339][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-28 21:25:47.341][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-28 21:25:47.342][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-28 21:25:47.343][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-28 21:25:47.345][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-28 21:25:47.346][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-28 21:25:47.348][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-28 21:25:47.349][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-28 21:25:47.350][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-28 21:25:47.352][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-28 21:25:47.353][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-28 21:25:47.354][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-28 21:25:47.356][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-28 21:25:47.357][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-28 21:25:47.359][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-28 21:25:47.360][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-28 21:25:47.361][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-28 21:25:47.363][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-28 21:25:47.364][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-28 21:25:47.366][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-28 21:25:47.367][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-28 21:25:47.368][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-28 21:25:47.370][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-28 21:25:47.371][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-28 21:25:47.372][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-28 21:25:47.374][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-28 21:25:47.375][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-28 21:25:47.376][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-28 21:25:47.378][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-28 21:25:47.379][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-28 21:25:47.380][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-28 21:25:47.382][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-28 21:25:47.383][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-28 21:25:47.384][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-28 21:25:47.390][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-28 21:25:47.392][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-09-28 21:25:47.395][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-28 21:25:47.396][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.397][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:25:47.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:25:47.535][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-09-28 21:25:47.545][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-09-28 21:25:47.547][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.548][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.549][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.550][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:25:47.551][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.552][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-09-28 21:25:47.553][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.554][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.555][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-28 21:25:47.556][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:25:47.556][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.557][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-09-28 21:25:47.558][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-09-28 21:25:47.559][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-09-28 21:25:47.561][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-28 21:25:47.562][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-28 21:25:47.562][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-09-28 21:25:47.562][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-09-28 21:25:47.563][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-28 21:25:47.564][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:25:47.564][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:25:47.565][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:25:47.566][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:25:47.567][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:25:47.568][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:25:47.569][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-28 21:25:47.569][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-09-28 21:25:47.570][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:25:47.571][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:25:47.572][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-28 21:25:47.573][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:25:47.579][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-09-28 21:25:47.580][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-28 21:25:47.582][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-28 21:25:47.583][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-28 21:25:47.584][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-28 21:25:47.606][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-09-28 21:25:47.607][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-09-28 21:25:47.611][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-28 21:25:47.615][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-28 21:25:47.619][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:25:47.620][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:25:47.621][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-09-28 21:25:47.622][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-09-28 21:25:47.623][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-28 21:25:47.623][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-09-28 21:25:47.624][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:25:47.625][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:25:47.632][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-09-28 21:25:47.633][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-09-28 21:25:47.634][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-28 21:25:47.650][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-28 21:25:47.651][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:25:47.652][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:25:47.654][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-28 21:25:47.655][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:25:47.656][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-09-28 21:25:47.663][biodb::testThat]
biodb.INFO [2025-09-28 21:25:47.664][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-09-28 21:25:47.665][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:25:47.666][biodb::testThat]
biodb.TRACE[2025-09-28 21:25:47.670][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-09-28 21:25:47.671][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-28 21:25:47.675][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-28 21:25:47.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:25:47.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:47.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:47.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:47.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:47.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:47.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-28 21:25:47.702][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:47.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:47.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.705][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:47.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:47.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.722][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:47.723][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:47.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.725][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.750][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:47.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:47.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.754][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:47.755][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:47.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.757][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.758][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:47.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:47.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.762][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:47.763][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:47.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.765][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.766][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:47.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:47.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:47.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:47.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.773][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:47.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.779][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:47.786][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:47.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.788][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:47.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:47.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.794][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:47.795][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:47.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.797][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.798][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:47.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:47.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.802][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:47.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:47.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.805][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:47.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.810][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:47.811][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:47.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.813][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:47.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:47.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.818][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:47.819][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:47.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.821][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:47.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.826][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:47.827][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:47.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.829][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:47.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:47.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:47.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:47.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.837][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:47.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:47.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.843][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:47.844][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:47.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.845][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:47.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:47.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:47.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:47.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.854][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:47.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:47.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:47.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:47.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.862][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:47.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:47.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.867][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:47.868][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:47.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.870][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:47.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:47.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.875][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:47.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:47.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.878][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:47.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:47.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.883][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-28 21:25:47.884][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:47.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.886][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.888][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-28 21:25:47.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:47.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:47.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:47.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:47.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:47.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.938][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:47.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:47.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.942][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:47.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:47.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.946][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:47.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:47.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:47.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.954][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:47.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:47.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.958][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:47.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:47.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:47.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:47.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:47.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:47.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:47.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:47.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:47.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:47.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:47.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:47.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:47.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:47.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:47.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:47.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:47.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:47.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:47.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:47.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:47.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:47.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.021][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:48.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:48.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:48.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.028][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:48.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:48.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:48.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:48.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:48.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:48.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:48.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:48.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:48.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:48.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:48.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:48.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:48.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.071][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.074][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.078][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.118][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:48.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:48.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:48.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:48.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:48.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:48.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.141][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-28 21:25:48.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.156][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-28 21:25:48.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.205][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.213][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:48.240][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-09-28 21:25:48.243][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-28 21:25:48.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-28 21:25:48.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-28 21:25:48.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-28 21:25:48.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-28 21:25:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-28 21:25:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-28 21:25:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-28 21:25:48.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.281][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.314][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.318][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.322][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.350][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.351][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.352][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.365][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.369][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.373][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.377][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.378][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.380][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.381][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:48.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:48.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:48.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:48.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:48.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.405][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:48.406][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:48.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.408][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:48.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:48.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.432][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.433][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.435][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:48.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:48.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:48.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:48.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:48.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:48.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:48.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.462][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:48.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:48.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.482][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.491][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.492][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.494][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.495][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.518][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.521][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.532][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:48.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:48.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.537][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:48.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:48.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.540][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:48.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:48.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.544][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:48.545][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:48.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.547][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.548][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:48.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:48.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:48.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:48.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:48.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:48.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:48.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.572][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:48.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:48.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.575][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:48.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:48.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.587][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:48.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:48.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.591][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:48.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:48.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.595][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:48.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:48.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.599][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:48.600][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:48.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.602][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.603][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:48.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:48.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.626][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.627][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.634][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.657][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.658][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.660][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:48.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:48.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:48.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:48.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:48.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:48.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.684][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:48.685][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:48.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.687][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:48.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:48.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.711][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.712][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.714][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:48.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:48.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:48.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:48.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:48.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:48.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:48.738][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:48.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.740][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:48.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:48.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:48.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:48.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:48.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:48.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.764][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:48.765][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:48.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.767][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:48.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:48.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.797][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.809][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:48.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:48.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.813][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:48.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:48.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:48.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:48.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.820][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:48.821][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:48.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.823][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:48.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.835][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:48.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:48.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.838][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.842][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:48.843][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:48.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.845][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.849][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:48.850][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:48.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.851][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:48.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:48.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.858][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.862][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:48.863][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:48.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.865][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.869][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:48.870][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:48.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.872][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.876][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.877][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:48.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.879][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.883][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.884][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:48.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.886][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.890][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:48.891][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:48.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.892][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.896][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:48.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:48.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.899][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.908][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:48.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:48.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.911][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.915][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.916][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:48.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.917][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.922][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.923][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:48.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.925][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:48.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.932][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.936][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:48.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:48.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.939][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:48.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.946][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.950][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.951][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:48.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.953][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:48.957][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:48.959][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:48.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:48.960][ef$get] fields variable is a list.
biodb.INFO [2025-09-28 21:25:48.967][biodb::testThat]
biodb.INFO [2025-09-28 21:25:48.968][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-09-28 21:25:48.969][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:25:48.970][biodb::testThat]
biodb.DEBUG[2025-09-28 21:25:48.984][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-09-28 21:25:48.991][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-28 21:25:48.996][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:48.997][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-28 21:25:48.999][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-09-28 21:25:49.000][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-28 21:25:49.003][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-09-28 21:25:49.004][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-28 21:25:49.028][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-28 21:25:49.029][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-28 21:25:49.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:25:49.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:25:49.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:25:49.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:25:49.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:25:49.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:25:49.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-28 21:25:49.048][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:49.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:49.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.051][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:49.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:49.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.056][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.057][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.059][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.060][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.064][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:49.065][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:49.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.067][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.068][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:49.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:49.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.072][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:49.073][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.075][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.076][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:49.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:49.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:49.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:49.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.083][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:49.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:49.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.088][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:49.089][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:49.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.091][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:49.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:49.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:49.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:49.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.099][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.101][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.105][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:49.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:49.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.107][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:49.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:49.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.113][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:49.114][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:49.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.116][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:49.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:49.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.121][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:49.122][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:49.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.124][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:49.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:49.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:49.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:49.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.132][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:49.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:49.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.137][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:49.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:49.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.140][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:49.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:49.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.145][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.146][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.148][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:49.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:49.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.156][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:49.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:49.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.162][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.165][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.170][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.171][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.173][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.174][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.178][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:49.183][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:49.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.185][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:49.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:49.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.190][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-28 21:25:49.191][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:49.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.193][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.194][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-28 21:25:49.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:49.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:49.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:49.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:49.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:49.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:49.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.209][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:49.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.213][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:49.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.217][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:25:49.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:25:49.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.221][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:49.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.225][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:49.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:49.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.229][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:25:49.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:25:49.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:49.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:49.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:49.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:49.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:25:49.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:25:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:49.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:49.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:49.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:49.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:25:49.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:49.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:49.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:49.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:49.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:25:49.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:49.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:49.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:49.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:49.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:25:49.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:49.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:49.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:49.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:49.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:49.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:25:49.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.291][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.295][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.299][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:49.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:49.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:49.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:25:49.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:25:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:49.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:49.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:49.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:25:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:25:49.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.340][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:49.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.344][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:49.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:49.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:49.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:25:49.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:49.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:49.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:49.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:49.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:25:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:49.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:49.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:49.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:49.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:49.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:25:49.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.386][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.390][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.394][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:49.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:49.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:25:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:25:49.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.409][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-28 21:25:49.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.424][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-28 21:25:49.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:25:49.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.452][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:49.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:49.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.456][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:49.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:49.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:49.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:49.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.464][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:49.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:25:49.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:49.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:49.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:49.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:49.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:49.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:49.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:49.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:49.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:49.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:25:49.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:25:49.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:49.491][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-09-28 21:25:49.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-28 21:25:49.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-28 21:25:49.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-28 21:25:49.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-28 21:25:49.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-28 21:25:49.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-28 21:25:49.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-28 21:25:49.510][biodb::testThat]
biodb.INFO [2025-09-28 21:25:49.511][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-09-28 21:25:49.511][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:25:49.512][biodb::testThat]
biodb.TRACE[2025-09-28 21:25:49.515][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.518][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:49.519][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-09-28 21:25:49.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:49.558][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-09-28 21:25:49.559][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-09-28 21:25:49.560][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-09-28 21:25:49.561][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-09-28 21:25:49.562][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:49.564][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:49.565][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-28 21:25:49.566][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:49.567][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-28 21:25:49.568][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-28 21:25:49.569][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-28 21:25:49.571][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-28 21:25:49.572][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-28 21:25:49.573][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-28 21:25:49.578][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-28 21:25:49.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:49.594][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-28 21:25:49.595][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-28 21:25:49.596][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-09-28 21:25:49.606][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.608][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.610][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:49.611][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-09-28 21:25:49.621][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.625][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.629][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:49.635][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-09-28 21:25:49.687][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-09-28 21:25:49.688][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-09-28 21:25:49.689][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-09-28 21:25:49.706][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:49.707][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:49.709][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-28 21:25:49.710][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:49.711][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-28 21:25:49.725][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-28 21:25:49.726][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-28 21:25:49.727][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-28 21:25:49.728][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-28 21:25:49.729][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-28 21:25:49.730][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-28 21:25:49.732][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.736][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.740][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.743][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:25:49.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:25:49.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:49.747][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-28 21:25:49.748][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-28 21:25:49.749][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-09-28 21:25:49.759][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.760][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.762][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:49.763][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-09-28 21:25:49.774][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.778][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.781][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:49.787][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-09-28 21:25:49.789][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-09-28 21:25:49.790][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-09-28 21:25:49.791][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-09-28 21:25:49.792][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:49.794][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:49.795][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-28 21:25:49.796][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:49.797][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-28 21:25:49.798][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-28 21:25:49.799][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-28 21:25:49.800][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-28 21:25:49.801][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-28 21:25:49.802][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-28 21:25:49.803][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-28 21:25:49.805][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.809][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.812][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.820][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:25:49.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:49.824][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-28 21:25:49.825][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-28 21:25:49.826][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-09-28 21:25:49.838][biodb::testThat]
biodb.INFO [2025-09-28 21:25:49.839][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-09-28 21:25:49.840][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:25:49.841][biodb::testThat]
biodb.TRACE[2025-09-28 21:25:49.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:49.871][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-09-28 21:25:49.872][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-09-28 21:25:49.873][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-09-28 21:25:49.874][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:49.876][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:49.877][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-28 21:25:49.878][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:25:49.879][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-28 21:25:49.881][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-28 21:25:49.882][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-28 21:25:49.882][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-28 21:25:49.883][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-28 21:25:49.884][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-28 21:25:49.885][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-28 21:25:49.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:25:49.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:25:49.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:25:49.903][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-28 21:25:49.904][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-09-28 21:25:49.917][biodb::testThat]
biodb.INFO [2025-09-28 21:25:49.918][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-09-28 21:25:49.919][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:25:49.919][biodb::testThat]
biodb.TRACE[2025-09-28 21:25:49.938][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-28 21:25:49.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-28 21:25:49.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.942][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-28 21:25:49.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-28 21:25:49.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-28 21:25:49.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-28 21:25:49.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.955][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-28 21:25:49.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-28 21:25:49.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:49.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:49.997][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-28 21:25:49.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-28 21:25:49.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:50.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:50.001][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-28 21:25:50.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-28 21:25:50.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:50.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:50.005][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-28 21:25:50.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-28 21:25:50.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:50.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:25:50.009][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-28 21:25:50.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-28 21:25:50.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:25:50.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-28 21:25:50.018][biodb::testThat]
biodb.INFO [2025-09-28 21:25:50.019][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-09-28 21:25:50.020][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:25:50.021][biodb::testThat]
biodb.INFO [2025-09-28 21:25:50.028][biodb::testThat]
biodb.INFO [2025-09-28 21:25:50.029][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-09-28 21:25:50.030][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:25:50.031][biodb::testThat]
biodb.INFO [2025-09-28 21:25:50.038][biodb::testThat]
biodb.INFO [2025-09-28 21:25:50.039][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-09-28 21:25:50.040][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:25:50.041][biodb::testThat]
biodb.DEBUG[2025-09-28 21:25:50.044][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-09-28 21:26:48.425][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-09-28 21:26:48.483][biodb::testThat]
biodb.INFO [2025-09-28 21:26:48.484][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-09-28 21:26:48.485][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:26:48.487][biodb::testThat]
biodb.DEBUG[2025-09-28 21:27:02.731][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-09-28 21:27:02.772][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:02.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:02.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:02.780][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:02.783][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:02.785][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:02.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:02.790][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:02.792][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:02.795][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:02.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:02.815][ef$get] fields variable is a list.
biodb.INFO [2025-09-28 21:27:02.818][biodb::testThat]
biodb.INFO [2025-09-28 21:27:02.820][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2025-09-28 21:27:02.821][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:27:02.823][biodb::testThat]
biodb.DEBUG[2025-09-28 21:27:02.825][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-09-28 21:27:02.876][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-28 21:27:02.878][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:02.879][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-28 21:27:02.895][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-09-28 21:27:02.897][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-09-28 21:27:02.898][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-09-28 21:27:02.899][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-28 21:27:02.901][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:02.902][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-28 21:27:02.903][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-28 21:27:02.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:27:02.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:02.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:02.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:02.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:02.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:02.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-28 21:27:02.946][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:02.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:02.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:02.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:02.950][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:02.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:02.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:02.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:02.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:02.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:02.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:02.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:02.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:02.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:02.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:02.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:02.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:02.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:02.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:02.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:02.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:02.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:02.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:02.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:02.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:02.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:02.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:02.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:27:02.978][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-09-28 21:27:02.979][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-09-28 21:27:02.995][biodb::testThat]
biodb.INFO [2025-09-28 21:27:02.996][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-09-28 21:27:02.997][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:27:02.998][biodb::testThat]
biodb.DEBUG[2025-09-28 21:27:03.005][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-09-28 21:27:03.006][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-09-28 21:27:03.007][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-28 21:27:03.009][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:03.010][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-28 21:27:03.012][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-09-28 21:27:03.013][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-09-28 21:27:03.014][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-09-28 21:27:03.016][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-28 21:27:03.017][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:03.018][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-28 21:27:03.019][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-28 21:27:03.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:27:03.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-28 21:27:03.032][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:03.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:03.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.036][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:03.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:03.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:03.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:03.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:03.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:03.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:03.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:03.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:03.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:03.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:03.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:03.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:03.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:27:03.068][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-09-28 21:27:03.069][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-09-28 21:27:03.070][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-09-28 21:27:03.082][biodb::testThat]
biodb.INFO [2025-09-28 21:27:03.083][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2025-09-28 21:27:03.084][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:27:03.085][biodb::testThat]
biodb.INFO [2025-09-28 21:27:03.105][biodb::testThat]
biodb.INFO [2025-09-28 21:27:03.106][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2025-09-28 21:27:03.107][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:27:03.108][biodb::testThat]
biodb.DEBUG[2025-09-28 21:27:03.110][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:03.112][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:03.113][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-28 21:27:03.114][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:03.115][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-28 21:27:03.117][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-28 21:27:03.118][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-28 21:27:03.119][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-28 21:27:03.120][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-09-28 21:27:03.127][biodb::testThat]
biodb.INFO [2025-09-28 21:27:03.128][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2025-09-28 21:27:03.128][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:27:03.129][biodb::testThat]
biodb.DEBUG[2025-09-28 21:27:03.132][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:03.133][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:03.134][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-28 21:27:03.136][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:03.137][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-28 21:27:03.138][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-28 21:27:03.139][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-28 21:27:03.140][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-28 21:27:03.141][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-09-28 21:27:03.149][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:03.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:03.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.152][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.153][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:03.154][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:03.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.156][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.161][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:03.163][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:03.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.165][ef$get] fields variable is a list.
biodb.INFO [2025-09-28 21:27:03.166][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-09-28 21:27:03.167][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-09-28 21:27:03.175][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-09-28 21:27:03.176][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-28 21:27:03.177][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.179][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.180][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-28 21:27:03.185][biodb::testContext]
biodb.INFO [2025-09-28 21:27:03.186][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-28 21:27:03.187][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-09-28 21:27:03.188][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-28 21:27:03.189][biodb::testContext]
biodb.INFO [2025-09-28 21:27:03.193][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-09-28 21:27:03.195][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-09-28 21:27:03.198][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-28 21:27:03.199][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-28 21:27:03.201][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-28 21:27:03.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.204][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-28 21:27:03.205][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-28 21:27:03.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.209][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-28 21:27:03.210][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-28 21:27:03.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.214][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-28 21:27:03.215][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-28 21:27:03.216][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-28 21:27:03.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.219][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-28 21:27:03.220][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-28 21:27:03.221][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-28 21:27:03.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.225][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-28 21:27:03.226][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-28 21:27:03.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.230][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-28 21:27:03.231][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-28 21:27:03.232][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-28 21:27:03.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.235][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-28 21:27:03.236][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-28 21:27:03.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.240][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-28 21:27:03.241][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-28 21:27:03.242][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-28 21:27:03.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.246][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-28 21:27:03.247][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-28 21:27:03.248][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-28 21:27:03.249][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-28 21:27:03.250][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-28 21:27:03.251][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-28 21:27:03.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.254][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-28 21:27:03.255][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-28 21:27:03.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.259][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-28 21:27:03.260][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-28 21:27:03.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.264][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-28 21:27:03.265][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-28 21:27:03.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.273][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-28 21:27:03.275][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-09-28 21:27:03.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.279][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-28 21:27:03.280][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-28 21:27:03.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.283][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-28 21:27:03.284][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-28 21:27:03.288][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-28 21:27:03.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.291][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-28 21:27:03.292][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-28 21:27:03.294][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-28 21:27:03.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.298][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-28 21:27:03.300][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.301][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-28 21:27:03.302][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.303][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:27:03.305][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.306][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.307][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.308][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.309][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-28 21:27:03.310][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:27:03.311][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.312][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-28 21:27:03.313][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:27:03.314][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.315][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.316][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-28 21:27:03.316][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-28 21:27:03.316][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-28 21:27:03.316][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-28 21:27:03.316][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-28 21:27:03.317][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-28 21:27:03.318][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:03.319][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:03.320][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:27:03.321][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:03.322][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:03.323][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.324][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.325][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:27:03.325][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:27:03.326][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.327][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.329][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-28 21:27:03.331][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.332][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-28 21:27:03.333][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.334][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:27:03.335][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.336][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.337][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.338][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.339][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-28 21:27:03.340][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:27:03.341][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.342][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-28 21:27:03.342][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:27:03.343][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.344][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.345][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-28 21:27:03.345][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-28 21:27:03.345][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-28 21:27:03.345][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-28 21:27:03.345][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-28 21:27:03.347][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-28 21:27:03.348][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:03.348][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:03.349][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:27:03.350][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:03.351][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:03.352][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.353][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.354][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:27:03.355][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:27:03.356][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.357][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.358][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-28 21:27:03.360][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.361][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-28 21:27:03.362][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.363][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:27:03.364][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.365][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.366][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.367][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.368][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-28 21:27:03.369][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:27:03.370][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.371][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-28 21:27:03.372][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:27:03.373][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.374][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.375][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.376][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-28 21:27:03.377][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:03.378][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:03.379][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:27:03.380][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:03.385][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:03.386][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.388][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.389][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:27:03.390][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:27:03.391][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.392][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.393][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-28 21:27:03.394][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.395][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-28 21:27:03.396][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.397][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:27:03.398][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.399][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.400][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.401][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.402][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-28 21:27:03.403][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:27:03.404][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.405][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-28 21:27:03.406][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:27:03.407][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.408][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.409][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.410][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-28 21:27:03.411][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:03.412][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:03.413][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:27:03.414][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:03.415][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:03.416][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.417][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.418][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:27:03.419][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:27:03.420][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.421][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.422][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-28 21:27:03.423][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.533][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-28 21:27:03.535][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-28 21:27:03.536][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-28 21:27:03.538][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-28 21:27:03.540][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-28 21:27:03.541][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-28 21:27:03.543][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-28 21:27:03.544][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-28 21:27:03.546][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-28 21:27:03.548][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-28 21:27:03.549][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-28 21:27:03.551][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-28 21:27:03.552][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-28 21:27:03.554][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-28 21:27:03.555][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-28 21:27:03.557][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-28 21:27:03.558][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-28 21:27:03.560][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-28 21:27:03.561][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-28 21:27:03.563][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-28 21:27:03.564][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-28 21:27:03.566][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-28 21:27:03.567][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-28 21:27:03.569][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-28 21:27:03.570][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-28 21:27:03.572][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-28 21:27:03.573][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-28 21:27:03.575][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-28 21:27:03.576][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-28 21:27:03.578][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-28 21:27:03.579][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-28 21:27:03.581][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-28 21:27:03.582][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-28 21:27:03.584][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-28 21:27:03.585][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-28 21:27:03.587][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-28 21:27:03.588][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-28 21:27:03.590][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-28 21:27:03.591][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-28 21:27:03.593][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-28 21:27:03.594][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-28 21:27:03.596][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-28 21:27:03.597][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-28 21:27:03.598][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-28 21:27:03.600][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-28 21:27:03.601][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-28 21:27:03.603][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-28 21:27:03.604][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-28 21:27:03.606][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-28 21:27:03.607][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-28 21:27:03.608][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-28 21:27:03.610][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-28 21:27:03.611][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-28 21:27:03.612][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-28 21:27:03.614][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-28 21:27:03.615][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-28 21:27:03.617][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-28 21:27:03.618][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-28 21:27:03.619][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-28 21:27:03.621][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-28 21:27:03.622][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-28 21:27:03.623][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-28 21:27:03.625][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-28 21:27:03.631][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-28 21:27:03.632][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-28 21:27:03.634][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-28 21:27:03.635][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-28 21:27:03.636][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-28 21:27:03.638][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-28 21:27:03.639][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-28 21:27:03.640][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-28 21:27:03.642][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-28 21:27:03.643][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-28 21:27:03.644][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-28 21:27:03.646][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-28 21:27:03.647][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-28 21:27:03.648][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-28 21:27:03.650][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-28 21:27:03.651][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-28 21:27:03.653][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-28 21:27:03.654][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-28 21:27:03.655][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-28 21:27:03.657][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-28 21:27:03.658][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-28 21:27:03.660][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-09-28 21:27:03.661][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-28 21:27:03.662][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.663][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:03.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:03.777][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-09-28 21:27:03.778][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-09-28 21:27:03.780][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.781][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.782][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.783][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:27:03.784][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.785][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-09-28 21:27:03.786][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.787][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.788][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-28 21:27:03.789][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:27:03.790][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.791][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-09-28 21:27:03.792][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-09-28 21:27:03.793][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-09-28 21:27:03.795][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:03.796][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-28 21:27:03.796][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-09-28 21:27:03.796][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-09-28 21:27:03.797][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-28 21:27:03.798][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:03.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:03.800][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:27:03.800][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:03.801][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:03.802][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:27:03.803][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-28 21:27:03.803][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-09-28 21:27:03.804][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:27:03.805][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:27:03.806][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:03.807][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:03.814][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-09-28 21:27:03.815][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-28 21:27:03.817][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-28 21:27:03.818][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-28 21:27:03.820][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-28 21:27:03.823][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-09-28 21:27:03.824][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-09-28 21:27:03.825][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-28 21:27:03.827][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-28 21:27:03.828][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:27:03.829][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:27:03.830][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-09-28 21:27:03.832][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-09-28 21:27:03.833][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-28 21:27:03.833][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-09-28 21:27:03.834][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:27:03.835][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:27:03.841][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-09-28 21:27:03.842][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-09-28 21:27:03.843][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-28 21:27:03.845][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-28 21:27:03.846][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:27:03.847][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:27:03.849][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-28 21:27:03.850][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:27:03.851][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-09-28 21:27:03.852][biodb::testThat]
biodb.INFO [2025-09-28 21:27:03.853][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-09-28 21:27:03.854][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:27:03.855][biodb::testThat]
biodb.DEBUG[2025-09-28 21:27:03.859][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:03.861][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:03.862][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-28 21:27:03.864][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:03.865][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-28 21:27:03.866][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-28 21:27:03.867][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-28 21:27:03.868][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-28 21:27:03.869][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-28 21:27:03.872][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-09-28 21:27:03.877][biodb::testThat]
biodb.INFO [2025-09-28 21:27:03.878][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-09-28 21:27:03.879][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:27:03.880][biodb::testThat]
biodb.DEBUG[2025-09-28 21:27:03.882][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-09-28 21:27:03.883][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-28 21:27:03.884][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:03.886][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-28 21:27:03.888][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-09-28 21:27:03.889][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-28 21:27:03.891][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-09-28 21:27:03.892][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-28 21:27:03.893][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-28 21:27:03.894][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-28 21:27:03.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:27:03.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:03.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:03.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:03.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:03.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:03.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-28 21:27:03.908][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:03.909][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:03.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.911][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:03.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.917][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:03.918][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:03.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.919][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.921][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:03.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:03.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.925][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:03.926][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:03.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.928][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.929][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:03.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:03.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.933][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:03.934][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:03.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.936][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.937][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:03.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:03.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:03.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:03.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.944][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:03.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:03.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.950][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:03.955][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:03.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.957][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:03.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:03.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.963][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:03.964][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:03.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.965][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:03.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:03.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:03.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:03.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.974][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:03.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:03.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.979][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:03.980][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:03.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.982][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:03.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:03.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.987][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:03.988][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:03.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.990][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:03.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:03.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.995][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:03.996][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:03.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:03.998][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:03.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:04.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:04.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.003][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:04.004][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:04.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.006][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:04.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:04.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.012][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.013][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.015][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:04.021][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:04.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.023][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:04.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:04.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.028][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:04.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:04.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.031][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:04.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:04.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.037][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:04.038][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:04.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.039][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.041][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:04.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:04.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.045][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:04.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:04.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.047][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:04.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:04.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.053][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-28 21:27:04.054][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:04.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.056][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.057][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-28 21:27:04.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:04.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.077][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:04.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:04.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:04.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:04.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.085][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:04.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:04.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.089][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:04.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:04.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.093][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:04.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:04.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.097][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:04.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:04.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:04.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:04.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:04.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:04.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:04.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:04.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:04.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:04.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:04.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:04.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:04.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:04.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:04.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:04.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:04.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:04.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:04.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:04.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:04.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:04.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:04.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:04.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:04.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:04.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:04.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:04.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:04.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:04.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:04.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.159][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:04.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:04.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.167][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:04.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:04.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.171][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:04.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:04.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:04.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:04.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:04.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:04.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:04.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:04.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:04.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:04.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:04.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:04.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:04.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.211][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:04.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:04.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.214][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:04.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:04.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.218][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:04.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:04.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:04.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:04.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:04.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:04.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:04.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:04.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:04.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:04.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:04.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:04.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:04.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:04.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:04.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:04.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:04.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:04.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.257][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:04.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:04.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.261][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:04.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:04.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.269][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:04.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:04.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:04.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:04.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:04.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:04.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.281][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:04.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:04.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.284][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-28 21:27:04.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.300][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-28 21:27:04.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:04.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:04.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:04.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.325][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:04.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:04.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:04.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:04.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:04.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:04.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:04.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:04.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.341][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:04.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:04.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.345][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:04.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:04.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.353][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:04.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:04.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:27:04.385][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-09-28 21:27:04.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:04.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:04.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:04.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:04.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-28 21:27:04.403][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-09-28 21:27:04.404][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-09-28 21:27:04.405][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-09-28 21:27:04.406][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-28 21:27:04.407][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.408][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.410][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-28 21:27:04.415][biodb::testContext]
biodb.INFO [2025-09-28 21:27:04.416][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-28 21:27:04.416][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-09-28 21:27:04.417][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-28 21:27:04.418][biodb::testContext]
biodb.INFO [2025-09-28 21:27:04.422][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-09-28 21:27:04.424][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-09-28 21:27:04.427][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-28 21:27:04.428][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-28 21:27:04.429][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-28 21:27:04.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.433][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-28 21:27:04.434][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-28 21:27:04.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.437][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-28 21:27:04.438][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-28 21:27:04.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.442][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-28 21:27:04.443][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-28 21:27:04.444][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-28 21:27:04.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.447][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-28 21:27:04.448][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-28 21:27:04.449][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-28 21:27:04.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.453][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-28 21:27:04.454][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-28 21:27:04.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.458][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-28 21:27:04.459][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-28 21:27:04.460][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-28 21:27:04.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.463][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-28 21:27:04.464][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-28 21:27:04.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.468][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-28 21:27:04.469][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-28 21:27:04.470][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-28 21:27:04.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.478][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-28 21:27:04.479][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-28 21:27:04.480][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-28 21:27:04.481][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-28 21:27:04.482][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-28 21:27:04.483][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-28 21:27:04.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.486][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-28 21:27:04.487][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-28 21:27:04.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.491][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-28 21:27:04.492][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-28 21:27:04.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.495][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-28 21:27:04.496][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-28 21:27:04.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.500][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-28 21:27:04.501][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-09-28 21:27:04.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.505][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-28 21:27:04.506][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-28 21:27:04.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.509][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-28 21:27:04.510][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-28 21:27:04.515][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-28 21:27:04.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.519][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-28 21:27:04.520][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-28 21:27:04.521][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-28 21:27:04.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.524][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-28 21:27:04.526][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.527][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-28 21:27:04.528][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.529][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:27:04.530][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.531][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.532][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.533][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.534][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-28 21:27:04.535][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:27:04.536][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.537][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-28 21:27:04.538][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:27:04.539][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.540][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.541][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-28 21:27:04.541][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-28 21:27:04.541][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-28 21:27:04.541][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-28 21:27:04.541][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-28 21:27:04.542][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-28 21:27:04.543][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:04.544][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:04.545][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:27:04.546][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:04.547][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:04.548][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.549][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.550][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:27:04.550][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:27:04.551][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.552][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.553][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-28 21:27:04.555][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.556][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-28 21:27:04.557][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.558][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:27:04.559][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.560][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.561][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.562][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.563][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-28 21:27:04.564][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:27:04.565][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.566][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-28 21:27:04.567][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:27:04.568][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.569][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.570][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-28 21:27:04.570][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-28 21:27:04.570][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-28 21:27:04.570][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-28 21:27:04.570][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-28 21:27:04.571][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-28 21:27:04.572][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:04.573][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:04.574][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:27:04.575][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:04.580][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:04.581][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.582][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.583][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:27:04.584][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:27:04.585][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.586][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.587][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-28 21:27:04.589][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.590][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-28 21:27:04.591][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.592][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:27:04.593][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.594][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.595][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.596][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.597][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-28 21:27:04.598][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:27:04.599][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.599][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-28 21:27:04.600][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:27:04.601][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.602][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.603][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.604][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-28 21:27:04.605][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:04.606][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:04.607][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:27:04.608][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:04.609][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:04.610][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.611][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.612][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:27:04.613][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:27:04.614][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.615][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.616][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-28 21:27:04.617][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.618][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-28 21:27:04.619][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.620][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:27:04.621][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.622][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.623][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.624][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.625][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-28 21:27:04.626][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:27:04.627][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.628][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-28 21:27:04.629][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:27:04.630][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.631][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.632][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.633][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-28 21:27:04.634][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:04.635][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:04.636][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:27:04.637][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:04.638][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:04.639][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.640][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.641][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:27:04.642][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:27:04.643][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.644][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:04.645][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-28 21:27:04.646][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.728][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-28 21:27:04.729][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-28 21:27:04.731][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-28 21:27:04.732][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-28 21:27:04.733][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-28 21:27:04.735][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-28 21:27:04.736][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-28 21:27:04.738][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-28 21:27:04.739][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-28 21:27:04.740][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-28 21:27:04.742][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-28 21:27:04.743][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-28 21:27:04.744][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-28 21:27:04.746][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-28 21:27:04.747][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-28 21:27:04.749][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-28 21:27:04.750][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-28 21:27:04.751][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-28 21:27:04.753][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-28 21:27:04.754][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-28 21:27:04.755][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-28 21:27:04.757][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-28 21:27:04.758][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-28 21:27:04.760][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-28 21:27:04.761][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-28 21:27:04.763][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-28 21:27:04.764][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-28 21:27:04.765][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-28 21:27:04.767][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-28 21:27:04.768][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-28 21:27:04.770][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-28 21:27:04.771][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-28 21:27:04.773][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-28 21:27:04.774][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-28 21:27:04.775][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-28 21:27:04.777][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-28 21:27:04.784][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-28 21:27:04.786][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-28 21:27:04.788][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-28 21:27:04.789][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-28 21:27:04.790][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-28 21:27:04.792][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-28 21:27:04.793][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-28 21:27:04.794][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-28 21:27:04.796][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-28 21:27:04.797][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-28 21:27:04.798][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-28 21:27:04.800][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-28 21:27:04.801][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-28 21:27:04.802][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-28 21:27:04.804][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-28 21:27:04.805][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-28 21:27:04.806][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-28 21:27:04.808][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-28 21:27:04.809][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-28 21:27:04.811][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-28 21:27:04.812][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-28 21:27:04.813][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-28 21:27:04.815][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-28 21:27:04.816][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-28 21:27:04.817][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-28 21:27:04.819][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-28 21:27:04.820][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-28 21:27:04.821][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-28 21:27:04.823][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-28 21:27:04.824][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-28 21:27:04.826][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-28 21:27:04.827][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-28 21:27:04.828][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-28 21:27:04.830][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-28 21:27:04.831][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-28 21:27:04.833][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-28 21:27:04.834][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-28 21:27:04.835][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-28 21:27:04.837][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-28 21:27:04.838][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-28 21:27:04.839][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-28 21:27:04.841][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-28 21:27:04.842][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-28 21:27:04.844][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-28 21:27:04.845][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-28 21:27:04.846][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-28 21:27:04.848][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-28 21:27:04.849][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-28 21:27:04.851][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-09-28 21:27:04.852][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-28 21:27:04.853][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.855][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-28 21:27:04.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:04.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:04.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:04.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:04.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:04.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:04.970][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-09-28 21:27:04.971][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-09-28 21:27:04.973][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.974][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.975][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.976][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-28 21:27:04.977][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.978][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-09-28 21:27:04.979][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.980][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-28 21:27:04.981][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-28 21:27:04.982][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-28 21:27:04.988][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:04.989][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-09-28 21:27:04.990][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-09-28 21:27:04.991][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-09-28 21:27:04.992][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-28 21:27:04.993][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-28 21:27:04.993][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-09-28 21:27:04.993][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-09-28 21:27:04.994][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-28 21:27:04.995][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:04.996][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:04.997][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-28 21:27:04.998][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-28 21:27:04.999][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-28 21:27:05.000][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-28 21:27:05.001][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-28 21:27:05.001][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-09-28 21:27:05.002][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:27:05.003][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:27:05.004][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-28 21:27:05.005][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-28 21:27:05.011][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-09-28 21:27:05.013][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-28 21:27:05.014][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-28 21:27:05.016][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-28 21:27:05.017][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-28 21:27:05.020][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-09-28 21:27:05.021][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-09-28 21:27:05.023][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-28 21:27:05.024][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-28 21:27:05.025][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:27:05.026][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:27:05.027][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-09-28 21:27:05.028][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-09-28 21:27:05.029][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-28 21:27:05.029][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-09-28 21:27:05.030][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-28 21:27:05.031][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-28 21:27:05.032][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-09-28 21:27:05.033][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-09-28 21:27:05.034][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-28 21:27:05.035][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-28 21:27:05.037][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:27:05.038][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:27:05.039][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-28 21:27:05.040][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-28 21:27:05.041][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-09-28 21:27:05.043][biodb::testThat]
biodb.INFO [2025-09-28 21:27:05.044][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2025-09-28 21:27:05.045][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-28 21:27:05.045][biodb::testThat]
biodb.DEBUG[2025-09-28 21:27:05.047][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-09-28 21:27:05.048][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-09-28 21:27:05.049][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-09-28 21:27:05.052][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:05.054][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:05.055][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-28 21:27:05.057][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:05.058][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-28 21:27:05.059][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-28 21:27:05.060][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-28 21:27:05.061][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-28 21:27:05.062][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-28 21:27:05.063][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-28 21:27:05.064][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-09-28 21:27:05.065][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-09-28 21:27:05.066][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-28 21:27:05.068][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:05.069][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-28 21:27:05.071][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-09-28 21:27:05.073][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-28 21:27:05.074][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-09-28 21:27:05.076][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-28 21:27:05.077][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-28 21:27:05.078][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-28 21:27:05.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:27:05.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:05.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:05.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:05.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:05.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:05.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-28 21:27:05.099][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.102][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.108][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.109][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.111][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.112][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.116][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.117][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.119][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.121][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.125][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.126][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.128][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.129][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.136][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.142][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.143][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.145][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.151][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.152][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.154][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.156][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.163][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.168][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.169][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.171][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.177][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.178][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.179][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.185][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:05.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:05.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.188][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:05.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:05.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:05.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:05.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.196][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:05.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:05.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.216][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.222][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.225][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.231][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.232][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.233][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.239][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.240][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.242][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.243][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.247][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:05.248][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:05.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.250][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:05.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:05.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.256][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-28 21:27:05.257][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.259][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.261][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-28 21:27:05.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.278][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.282][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.287][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.291][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.296][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.300][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.368][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.376][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:05.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:05.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:05.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:05.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:05.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:05.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:05.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:05.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:05.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:05.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:05.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:05.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.415][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.420][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.468][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.472][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.476][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:05.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:05.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:05.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:05.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:05.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:05.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.492][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-28 21:27:05.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.508][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-28 21:27:05.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.557][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:05.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:05.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.561][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:05.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:05.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.569][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:05.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:27:05.597][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-09-28 21:27:05.598][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.602][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.606][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.610][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:27:05.614][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-28 21:27:05.615][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-28 21:27:05.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:27:05.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:05.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:05.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:05.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:05.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:05.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:05.626][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-09-28 21:27:05.627][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-28 21:27:05.629][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:05.630][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-28 21:27:05.632][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-09-28 21:27:05.633][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-28 21:27:05.635][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-09-28 21:27:05.636][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-28 21:27:05.642][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-28 21:27:05.643][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-28 21:27:05.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:27:05.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:05.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:05.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:05.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:05.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:05.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-28 21:27:05.658][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.660][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.666][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.667][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.669][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.670][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:05.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.674][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.675][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.677][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.679][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.683][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.684][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.686][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.687][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.694][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.700][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.701][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.703][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.708][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.710][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.712][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.720][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:05.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.726][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.727][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.729][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.734][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.735][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.737][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.743][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:05.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:05.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.745][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:05.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:05.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:05.757][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:05.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.759][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:05.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:05.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.765][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.768][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.773][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.774][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.776][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.781][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.782][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.784][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.790][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.791][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.793][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.794][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.798][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:05.799][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:05.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.801][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:05.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:05.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.806][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-28 21:27:05.807][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.809][ef$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.811][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-28 21:27:05.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:05.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:05.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.827][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.831][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.835][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-28 21:27:05.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.839][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.843][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.847][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-28 21:27:05.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-28 21:27:05.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-28 21:27:05.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-28 21:27:05.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-28 21:27:05.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-28 21:27:05.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.916][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.919][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:05.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:05.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:05.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:05.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:05.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:05.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-28 21:27:05.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-28 21:27:05.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:05.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:05.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:05.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:05.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-28 21:27:05.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-28 21:27:05.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:05.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.977][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-28 21:27:05.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-28 21:27:05.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:05.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:05.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:05.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:05.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:06.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:06.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:06.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:06.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:06.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:06.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-28 21:27:06.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.017][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:06.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:06.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.021][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:06.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.025][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:06.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-28 21:27:06.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:06.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:06.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:06.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:06.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-28 21:27:06.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-28 21:27:06.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.041][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-28 21:27:06.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:06.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:06.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:06.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:06.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:06.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-28 21:27:06.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:06.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.058][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-28 21:27:06.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-28 21:27:06.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:06.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:06.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:06.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:06.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:06.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:06.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:06.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-28 21:27:06.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-28 21:27:06.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.089][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:06.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:06.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.093][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:06.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:06.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:06.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:06.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.101][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:06.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-28 21:27:06.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:06.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:06.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:06.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:06.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:06.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:06.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:06.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:06.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:06.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-28 21:27:06.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-28 21:27:06.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:27:06.129][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-09-28 21:27:06.131][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.135][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.139][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.143][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:27:06.147][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-28 21:27:06.148][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-09-28 21:27:06.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:27:06.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:06.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:06.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:06.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:06.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:06.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:06.163][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-09-28 21:27:06.164][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-09-28 21:27:06.165][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-09-28 21:27:06.167][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:06.168][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:06.169][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-28 21:27:06.171][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:06.172][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-28 21:27:06.173][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-28 21:27:06.174][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-28 21:27:06.175][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-28 21:27:06.176][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-28 21:27:06.177][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-28 21:27:06.178][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-28 21:27:06.184][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.193][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.197][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.201][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.205][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.209][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:27:06.213][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-28 21:27:06.214][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-28 21:27:06.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:27:06.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:06.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:06.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:06.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:06.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:06.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-28 21:27:06.225][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.229][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.233][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.237][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.241][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.245][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.249][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:27:06.253][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-09-28 21:27:06.254][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-28 21:27:06.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:27:06.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:06.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:06.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:06.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:06.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:06.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-28 21:27:06.270][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-09-28 21:27:06.271][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-09-28 21:27:06.272][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-09-28 21:27:06.273][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:06.275][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:06.276][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-28 21:27:06.278][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-28 21:27:06.278][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-28 21:27:06.280][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-28 21:27:06.281][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-28 21:27:06.282][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-28 21:27:06.283][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-28 21:27:06.284][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-28 21:27:06.285][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-28 21:27:06.286][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.296][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.300][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.304][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.308][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.312][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.316][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:27:06.320][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-09-28 21:27:06.321][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-09-28 21:27:06.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:27:06.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:06.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:06.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:06.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:06.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:06.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-28 21:27:06.332][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.336][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.340][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.344][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.348][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-28 21:27:06.356][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-28 21:27:06.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-28 21:27:06.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-28 21:27:06.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-28 21:27:06.360][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-28 21:27:06.361][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-28 21:27:06.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-28 21:27:06.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:06.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:06.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:06.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:06.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:06.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-28 21:27:06.378][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-09-28 21:27:06.379][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-09-28 21:27:06.380][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-09-28 21:27:06.381][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-28 21:27:06.382][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-28 21:27:06.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-28 21:27:06.384][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-28 21:27:06.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-28 21:27:06.386][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-28 21:27:06.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
8.670 0.397 81.522