Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4827
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4608
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4549
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4580
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on kjohnson1

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.14.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.14.0.tar.gz

StartedAt: 2025-09-26 14:04:43 -0400 (Fri, 26 Sep 2025)

EndedAt: 2025-09-26 14:05:35 -0400 (Fri, 26 Sep 2025)

EllapsedTime: 51.2 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.5.1 Patched (2025-06-14 r88325)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.14.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-09-26 14:05:19.591][biodb::testContext]
biodb.INFO [2025-09-26 14:05:19.595][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 14:05:19.596][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-09-26 14:05:19.596][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 14:05:19.597][biodb::testContext]
biodb.INFO [2025-09-26 14:05:19.598][biodb::testThat]
biodb.INFO [2025-09-26 14:05:19.598][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-09-26 14:05:19.599][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:19.599][biodb::testThat]
biodb.INFO [2025-09-26 14:05:19.675][biodb::testContext]
biodb.INFO [2025-09-26 14:05:19.677][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 14:05:19.678][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-09-26 14:05:19.679][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 14:05:19.679][biodb::testContext]
biodb.INFO [2025-09-26 14:05:19.686][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-09-26 14:05:19.687][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-09-26 14:05:19.696][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 14:05:19.697][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-26 14:05:19.697][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-26 14:05:19.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.699][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-26 14:05:19.720][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-26 14:05:19.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.722][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-26 14:05:19.722][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-26 14:05:19.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.728][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-26 14:05:19.729][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-26 14:05:19.729][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-26 14:05:19.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.731][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-26 14:05:19.731][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-26 14:05:19.731][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-26 14:05:19.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.733][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-26 14:05:19.733][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-26 14:05:19.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.734][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-26 14:05:19.735][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-26 14:05:19.735][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-26 14:05:19.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.736][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-26 14:05:19.737][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-26 14:05:19.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.739][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-26 14:05:19.740][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-26 14:05:19.741][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-26 14:05:19.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.742][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-26 14:05:19.743][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-26 14:05:19.743][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-26 14:05:19.743][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-26 14:05:19.744][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-26 14:05:19.744][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-26 14:05:19.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.747][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-26 14:05:19.747][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-26 14:05:19.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.749][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-26 14:05:19.749][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-26 14:05:19.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.750][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-26 14:05:19.751][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-26 14:05:19.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.752][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-26 14:05:19.752][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-09-26 14:05:19.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.754][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-26 14:05:19.754][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-26 14:05:19.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.755][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-26 14:05:19.755][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-26 14:05:19.774][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-26 14:05:19.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.777][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-26 14:05:19.777][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-26 14:05:19.778][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-26 14:05:19.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.782][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-26 14:05:19.817][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:19.833][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-26 14:05:19.835][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.836][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:19.836][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.837][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 14:05:19.838][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:19.839][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:19.840][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-26 14:05:19.841][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:19.842][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.842][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-26 14:05:19.843][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:19.844][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.844][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.845][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 14:05:19.845][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-26 14:05:19.845][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-26 14:05:19.845][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-26 14:05:19.845][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-26 14:05:19.845][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 14:05:19.846][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:19.846][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:19.848][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:19.856][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:19.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:19.859][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:19.861][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.862][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:19.863][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:19.864][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:19.865][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.867][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-26 14:05:19.868][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:19.869][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-26 14:05:19.870][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.871][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:19.872][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.873][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 14:05:19.874][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:19.875][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:19.875][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-26 14:05:19.876][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:19.877][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.878][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-26 14:05:19.879][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:19.880][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.880][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.881][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 14:05:19.881][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-26 14:05:19.881][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-26 14:05:19.881][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-26 14:05:19.881][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-26 14:05:19.882][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 14:05:19.883][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:19.884][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:19.885][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:19.885][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:19.886][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:19.887][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:19.888][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.889][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:19.889][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:19.890][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:19.891][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.892][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-26 14:05:19.894][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.895][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-26 14:05:19.896][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.897][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:19.898][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.898][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 14:05:19.899][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:19.900][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:19.901][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-26 14:05:19.903][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:19.904][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:19.905][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-26 14:05:19.907][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:19.908][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.909][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.911][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.912][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 14:05:19.913][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:19.914][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:19.915][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:19.916][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:19.917][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:19.917][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:19.918][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.919][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:19.920][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:19.921][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:19.922][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.923][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-26 14:05:19.924][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.925][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-26 14:05:19.926][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.927][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:19.928][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.929][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 14:05:19.930][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:19.931][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:19.932][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-26 14:05:19.933][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:19.935][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:19.937][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-26 14:05:19.938][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:19.939][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.940][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:19.941][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.942][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 14:05:19.943][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:19.944][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:19.945][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:19.945][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:19.946][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:19.947][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:19.948][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.949][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:19.950][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:19.951][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:19.952][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:19.956][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 14:05:19.957][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:19.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:19.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:19.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:19.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:19.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:19.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:19.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:19.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:19.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:19.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:19.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:19.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:19.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:19.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:19.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:19.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:19.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:19.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:19.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:19.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:19.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:19.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:19.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:19.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:19.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.030][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-26 14:05:20.036][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-26 14:05:20.038][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-26 14:05:20.040][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-26 14:05:20.042][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-26 14:05:20.043][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-26 14:05:20.045][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-26 14:05:20.046][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-26 14:05:20.047][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-26 14:05:20.049][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-26 14:05:20.050][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-26 14:05:20.051][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-26 14:05:20.053][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-26 14:05:20.054][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-26 14:05:20.055][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-26 14:05:20.056][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-26 14:05:20.057][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-26 14:05:20.059][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-26 14:05:20.060][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-26 14:05:20.061][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-26 14:05:20.062][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-26 14:05:20.063][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-26 14:05:20.065][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-26 14:05:20.066][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-26 14:05:20.067][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-26 14:05:20.068][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-26 14:05:20.069][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-26 14:05:20.071][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-26 14:05:20.072][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-26 14:05:20.073][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-26 14:05:20.074][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-26 14:05:20.075][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-26 14:05:20.077][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-26 14:05:20.078][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-26 14:05:20.079][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-26 14:05:20.080][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-26 14:05:20.081][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-26 14:05:20.082][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-26 14:05:20.083][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-26 14:05:20.085][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-26 14:05:20.086][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-26 14:05:20.087][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-26 14:05:20.088][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-26 14:05:20.089][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-26 14:05:20.091][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-26 14:05:20.092][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-26 14:05:20.093][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-26 14:05:20.094][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-26 14:05:20.095][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-26 14:05:20.096][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-26 14:05:20.098][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-26 14:05:20.099][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-26 14:05:20.101][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-26 14:05:20.103][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-26 14:05:20.104][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-26 14:05:20.105][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-26 14:05:20.106][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-26 14:05:20.108][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-26 14:05:20.109][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-26 14:05:20.110][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-26 14:05:20.112][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-26 14:05:20.113][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-26 14:05:20.114][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-26 14:05:20.116][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-26 14:05:20.117][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-26 14:05:20.118][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-26 14:05:20.119][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-26 14:05:20.121][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-26 14:05:20.122][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-26 14:05:20.123][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-26 14:05:20.124][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-26 14:05:20.126][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-26 14:05:20.127][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-26 14:05:20.128][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-26 14:05:20.129][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-26 14:05:20.130][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-26 14:05:20.132][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-26 14:05:20.133][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-26 14:05:20.134][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-26 14:05:20.135][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-26 14:05:20.136][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-26 14:05:20.137][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-26 14:05:20.139][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-26 14:05:20.145][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-26 14:05:20.148][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-09-26 14:05:20.152][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 14:05:20.154][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.156][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:20.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:20.308][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-09-26 14:05:20.321][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 14:05:20.324][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:20.325][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-26 14:05:20.326][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:20.327][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:20.328][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:20.329][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-09-26 14:05:20.330][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:20.331][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:20.331][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-26 14:05:20.332][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:20.333][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:20.334][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-09-26 14:05:20.335][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-09-26 14:05:20.336][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-09-26 14:05:20.337][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:20.338][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 14:05:20.338][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-09-26 14:05:20.338][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-09-26 14:05:20.339][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-26 14:05:20.339][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:20.340][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:20.341][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:20.342][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:20.343][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:20.343][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:20.344][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-26 14:05:20.344][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-09-26 14:05:20.345][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:20.346][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:20.347][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:20.348][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:20.354][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-09-26 14:05:20.356][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-26 14:05:20.357][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-26 14:05:20.359][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-26 14:05:20.360][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-26 14:05:20.395][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 14:05:20.396][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-09-26 14:05:20.402][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 14:05:20.407][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 14:05:20.413][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:20.414][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:20.415][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-09-26 14:05:20.416][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-09-26 14:05:20.417][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-26 14:05:20.417][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-09-26 14:05:20.418][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:20.419][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:20.419][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-09-26 14:05:20.420][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-09-26 14:05:20.421][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 14:05:20.448][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 14:05:20.450][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:20.451][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:20.452][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 14:05:20.453][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:20.454][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-09-26 14:05:20.463][biodb::testThat]
biodb.INFO [2025-09-26 14:05:20.465][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-09-26 14:05:20.465][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:20.466][biodb::testThat]
biodb.TRACE[2025-09-26 14:05:20.471][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-09-26 14:05:20.473][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 14:05:20.478][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 14:05:20.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:20.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:20.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:20.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:20.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:20.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:20.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 14:05:20.515][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:20.516][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:20.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.518][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:20.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.537][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:20.538][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:20.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.540][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.566][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:20.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:20.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.572][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:20.573][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:20.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.575][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.576][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:20.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:20.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.580][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:20.581][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:20.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.582][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.583][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:20.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:20.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:20.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:20.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.589][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:20.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:20.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.594][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:20.595][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:20.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.596][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:20.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:20.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.615][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:20.616][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:20.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.617][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.619][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:20.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:20.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:20.623][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:20.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.625][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:20.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.629][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:20.630][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:20.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.632][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:20.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:20.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.636][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:20.637][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:20.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.639][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:20.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:20.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.644][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:20.645][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:20.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.646][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:20.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:20.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.653][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:20.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:20.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.656][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:20.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:20.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.664][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:20.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:20.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.672][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:20.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:20.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.677][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:20.678][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:20.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.679][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:20.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:20.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.684][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:20.685][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:20.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.686][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.687][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:20.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:20.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.691][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:20.692][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:20.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.693][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:20.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:20.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.698][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 14:05:20.699][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:20.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.700][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.702][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 14:05:20.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:20.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:20.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:20.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:20.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:20.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:20.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.756][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:20.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.761][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:20.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:20.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.764][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:20.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.768][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:20.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:20.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.771][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:20.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:20.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.775][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:20.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:20.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:20.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:20.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:20.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:20.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:20.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:20.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:20.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:20.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:20.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:20.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:20.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:20.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:20.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:20.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:20.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:20.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:20.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:20.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:20.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:20.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:20.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:20.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:20.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:20.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:20.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:20.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:20.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:20.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:20.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.840][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:20.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:20.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.845][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:20.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:20.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.851][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:20.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:20.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:20.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:20.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:20.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:20.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:20.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:20.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:20.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:20.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:20.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:20.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:20.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.891][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:20.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:20.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.893][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:20.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:20.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.894][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:20.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:20.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:20.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:20.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:20.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:20.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:20.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:20.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:20.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:20.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:20.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:20.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:20.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:20.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:20.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:20.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:20.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:20.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:20.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.908][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:20.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:20.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.909][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:20.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:20.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.911][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:20.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:20.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:20.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:20.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:20.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:20.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:20.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:20.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.924][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 14:05:20.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.938][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 14:05:20.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:20.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:20.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:20.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:20.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:20.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:20.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:20.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:20.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:20.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.964][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:20.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:20.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.968][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:20.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:20.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.978][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:20.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:20.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:20.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:20.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.985][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:20.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:20.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:20.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:20.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:20.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:20.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:20.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:20.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:20.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:20.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:20.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:20.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:20.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:20.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:20.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:20.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:20.999][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-09-26 14:05:21.000][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-26 14:05:21.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-26 14:05:21.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.002][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-26 14:05:21.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-26 14:05:21.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.004][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-26 14:05:21.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-26 14:05:21.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.005][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-26 14:05:21.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-26 14:05:21.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.033][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.055][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.057][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.058][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.070][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.077][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.087][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.092][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.094][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.096][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.097][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.097][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.098][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.112][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.113][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.113][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.124][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.124][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.125][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.138][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.146][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.151][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.154][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.160][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.161][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.190][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.190][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.193][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.202][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:21.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:21.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.204][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:21.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:21.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.206][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:21.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:21.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.207][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:21.208][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:21.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.209][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.209][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:21.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:21.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:21.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:21.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:21.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:21.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:21.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.226][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:21.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:21.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.227][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:21.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:21.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.241][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.245][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.248][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.252][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.253][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.254][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.255][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.283][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.287][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.307][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.307][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.308][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.322][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.322][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.323][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.334][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.335][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.335][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:21.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:21.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:21.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:21.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:21.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:21.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:21.347][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:21.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.348][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:21.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:21.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:21.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:21.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:21.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:21.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:21.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:21.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.361][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:21.361][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:21.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.362][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:21.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:21.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.379][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.379][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.380][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.387][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.389][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.390][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.392][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.392][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.393][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.393][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.399][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.401][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.403][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.404][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.404][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.407][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.407][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.408][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.412][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.415][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.415][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.416][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.418][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.419][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.420][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.422][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.423][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.424][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.428][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.429][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.432][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.438][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:21.439][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:21.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.441][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.446][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:21.447][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:21.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.449][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.454][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:21.455][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:21.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.457][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.469][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.470][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.472][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.478][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.478][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.479][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.481][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.482][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.484][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.489][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.492][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.497][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.498][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.500][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.505][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.506][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.508][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.513][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:21.514][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:21.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.516][ef$get] fields variable is a list.
biodb.INFO [2025-09-26 14:05:21.524][biodb::testThat]
biodb.INFO [2025-09-26 14:05:21.525][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-09-26 14:05:21.526][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:21.527][biodb::testThat]
biodb.DEBUG[2025-09-26 14:05:21.542][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-09-26 14:05:21.551][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-26 14:05:21.557][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:21.558][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-26 14:05:21.562][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-09-26 14:05:21.563][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-26 14:05:21.564][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-09-26 14:05:21.565][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-26 14:05:21.576][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 14:05:21.577][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 14:05:21.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:21.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:21.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:21.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:21.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:21.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:21.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 14:05:21.585][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.586][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.587][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.597][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.597][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.598][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.599][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.602][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.602][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.603][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.604][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.606][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.606][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.607][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.607][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.611][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.614][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.614][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.615][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.617][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.619][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.619][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.621][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.622][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.624][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.624][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.626][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.629][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.629][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.630][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.632][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:21.633][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:21.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.634][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:21.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:21.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.638][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:21.639][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:21.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.641][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:21.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:21.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.643][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.643][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.645][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.648][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.653][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.656][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.661][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:21.662][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:21.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.664][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.665][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:21.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:21.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.669][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:21.670][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:21.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.672][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:21.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:21.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.682][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 14:05:21.684][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.685][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.686][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 14:05:21.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.698][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.702][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.704][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:21.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.706][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.711][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.714][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:21.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:21.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:21.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:21.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:21.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:21.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.757][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:21.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:21.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:21.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:21.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.762][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:21.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:21.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:21.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:21.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:21.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:21.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:21.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:21.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:21.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:21.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:21.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:21.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:21.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.784][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.789][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.792][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:21.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:21.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:21.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.824][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.828][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.831][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:21.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:21.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:21.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:21.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:21.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:21.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.838][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 14:05:21.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.851][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 14:05:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:21.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.872][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.882][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.885][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:21.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:21.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:21.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:21.908][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-09-26 14:05:21.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-26 14:05:21.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-26 14:05:21.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-26 14:05:21.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-26 14:05:21.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-26 14:05:21.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-26 14:05:21.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-26 14:05:21.927][biodb::testThat]
biodb.INFO [2025-09-26 14:05:21.928][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-09-26 14:05:21.929][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:21.930][biodb::testThat]
biodb.TRACE[2025-09-26 14:05:21.933][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.934][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.936][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:21.937][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-09-26 14:05:21.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:21.973][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-09-26 14:05:21.974][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-09-26 14:05:21.974][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-09-26 14:05:21.975][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-09-26 14:05:21.976][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:21.976][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:21.977][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 14:05:21.978][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:21.978][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 14:05:21.979][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 14:05:21.980][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 14:05:21.981][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 14:05:21.982][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 14:05:21.982][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 14:05:21.983][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-26 14:05:21.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:21.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:21.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:21.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:22.000][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 14:05:22.001][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 14:05:22.002][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-09-26 14:05:22.015][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:22.016][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:22.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.018][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:22.019][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-09-26 14:05:22.032][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:22.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:22.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.036][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:22.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:22.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.040][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:22.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:22.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:22.046][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-09-26 14:05:22.103][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-09-26 14:05:22.104][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-09-26 14:05:22.105][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-09-26 14:05:22.131][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:22.132][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:22.134][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 14:05:22.135][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:22.136][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 14:05:22.152][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 14:05:22.153][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 14:05:22.154][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 14:05:22.155][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 14:05:22.156][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 14:05:22.157][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-26 14:05:22.158][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:22.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:22.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.163][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:22.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:22.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.168][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:22.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:22.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.172][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:22.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:22.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:22.175][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 14:05:22.176][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 14:05:22.177][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-09-26 14:05:22.193][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.194][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.196][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:22.197][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-09-26 14:05:22.214][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.218][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.222][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:22.228][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-09-26 14:05:22.230][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-09-26 14:05:22.230][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-09-26 14:05:22.231][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-09-26 14:05:22.233][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:22.234][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:22.236][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 14:05:22.237][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:22.238][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 14:05:22.239][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 14:05:22.241][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 14:05:22.242][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 14:05:22.242][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 14:05:22.243][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 14:05:22.244][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-26 14:05:22.246][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.250][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.254][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.257][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:22.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:22.261][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 14:05:22.262][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 14:05:22.263][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-09-26 14:05:22.289][biodb::testThat]
biodb.INFO [2025-09-26 14:05:22.290][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-09-26 14:05:22.291][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:22.292][biodb::testThat]
biodb.TRACE[2025-09-26 14:05:22.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:22.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:22.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:22.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:22.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:22.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:22.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:22.329][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-09-26 14:05:22.330][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-09-26 14:05:22.331][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-09-26 14:05:22.333][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:22.334][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:22.335][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 14:05:22.337][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:22.338][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 14:05:22.339][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 14:05:22.340][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 14:05:22.341][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 14:05:22.342][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 14:05:22.342][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 14:05:22.343][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-26 14:05:22.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:22.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:22.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:22.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:22.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:22.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:22.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:22.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:22.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:22.363][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 14:05:22.364][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-09-26 14:05:22.381][biodb::testThat]
biodb.INFO [2025-09-26 14:05:22.382][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-09-26 14:05:22.383][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:22.384][biodb::testThat]
biodb.TRACE[2025-09-26 14:05:22.408][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-26 14:05:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-26 14:05:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.412][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-26 14:05:22.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-26 14:05:22.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.417][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-26 14:05:22.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-26 14:05:22.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.422][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-26 14:05:22.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-26 14:05:22.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-26 14:05:22.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-26 14:05:22.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.489][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-26 14:05:22.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-26 14:05:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.493][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-26 14:05:22.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-26 14:05:22.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:22.497][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-26 14:05:22.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-26 14:05:22.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:22.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-26 14:05:22.510][biodb::testThat]
biodb.INFO [2025-09-26 14:05:22.512][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-09-26 14:05:22.513][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:22.514][biodb::testThat]
biodb.INFO [2025-09-26 14:05:22.525][biodb::testThat]
biodb.INFO [2025-09-26 14:05:22.526][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-09-26 14:05:22.527][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:22.528][biodb::testThat]
biodb.INFO [2025-09-26 14:05:22.540][biodb::testThat]
biodb.INFO [2025-09-26 14:05:22.541][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-09-26 14:05:22.543][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:22.544][biodb::testThat]
biodb.DEBUG[2025-09-26 14:05:22.549][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-09-26 14:05:23.771][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-09-26 14:05:23.964][biodb::testThat]
biodb.INFO [2025-09-26 14:05:23.965][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-09-26 14:05:23.966][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:23.967][biodb::testThat]
biodb.DEBUG[2025-09-26 14:05:24.431][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-09-26 14:05:24.621][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:24.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:24.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.624][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.625][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:24.626][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:24.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.628][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.629][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:24.630][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:24.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.632][ef$get] fields variable is a list.
biodb.INFO [2025-09-26 14:05:24.633][biodb::testThat]
biodb.INFO [2025-09-26 14:05:24.634][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-09-26 14:05:24.635][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:24.636][biodb::testThat]
biodb.DEBUG[2025-09-26 14:05:24.655][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-09-26 14:05:24.702][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-26 14:05:24.706][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:24.708][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-26 14:05:24.725][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-09-26 14:05:24.727][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-09-26 14:05:24.728][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-09-26 14:05:24.729][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-26 14:05:24.730][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:24.732][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 14:05:24.733][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 14:05:24.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:24.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:24.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:24.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:24.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:24.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:24.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 14:05:24.746][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:24.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:24.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.795][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:24.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:24.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:24.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:24.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:24.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:24.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:24.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:24.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:24.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:24.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:24.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:24.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:24.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:24.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:24.824][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-09-26 14:05:24.825][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-09-26 14:05:24.843][biodb::testThat]
biodb.INFO [2025-09-26 14:05:24.844][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-09-26 14:05:24.845][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:24.846][biodb::testThat]
biodb.DEBUG[2025-09-26 14:05:24.854][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-09-26 14:05:24.856][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-09-26 14:05:24.857][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-26 14:05:24.858][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:24.860][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-26 14:05:24.861][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-09-26 14:05:24.863][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-09-26 14:05:24.864][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-09-26 14:05:24.865][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-26 14:05:24.866][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:24.867][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 14:05:24.868][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 14:05:24.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:24.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:24.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:24.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:24.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:24.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:24.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 14:05:24.881][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:24.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:24.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.886][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:24.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:24.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:24.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:24.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:24.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:24.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:24.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:24.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:24.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:24.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:24.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:24.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:24.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:24.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:24.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:24.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:24.917][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-09-26 14:05:24.918][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-09-26 14:05:24.919][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-09-26 14:05:24.933][biodb::testThat]
biodb.INFO [2025-09-26 14:05:24.934][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-09-26 14:05:24.935][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:24.935][biodb::testThat]
biodb.INFO [2025-09-26 14:05:24.961][biodb::testThat]
biodb.INFO [2025-09-26 14:05:24.962][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-09-26 14:05:24.963][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:24.964][biodb::testThat]
biodb.DEBUG[2025-09-26 14:05:24.967][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:24.969][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:24.971][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 14:05:24.973][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:24.974][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 14:05:24.976][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 14:05:24.977][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 14:05:24.979][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 14:05:24.980][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-09-26 14:05:24.991][biodb::testThat]
biodb.INFO [2025-09-26 14:05:24.993][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-09-26 14:05:24.994][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:24.995][biodb::testThat]
biodb.DEBUG[2025-09-26 14:05:24.998][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:25.000][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:25.002][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 14:05:25.004][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:25.005][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 14:05:25.007][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 14:05:25.009][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 14:05:25.010][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 14:05:25.012][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-09-26 14:05:25.024][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:25.026][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:25.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.028][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.029][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:25.030][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:25.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.031][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.032][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:25.033][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:25.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.035][ef$get] fields variable is a list.
biodb.INFO [2025-09-26 14:05:25.036][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-09-26 14:05:25.037][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-09-26 14:05:25.053][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-09-26 14:05:25.054][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-26 14:05:25.055][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.057][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.058][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-26 14:05:25.064][biodb::testContext]
biodb.INFO [2025-09-26 14:05:25.065][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 14:05:25.065][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-09-26 14:05:25.066][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 14:05:25.067][biodb::testContext]
biodb.INFO [2025-09-26 14:05:25.072][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-09-26 14:05:25.074][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-09-26 14:05:25.079][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 14:05:25.080][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-26 14:05:25.081][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-26 14:05:25.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.085][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-26 14:05:25.086][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-26 14:05:25.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.090][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-26 14:05:25.092][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-26 14:05:25.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.095][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-26 14:05:25.096][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-26 14:05:25.097][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-26 14:05:25.098][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.100][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-26 14:05:25.101][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-26 14:05:25.102][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-26 14:05:25.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.106][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-26 14:05:25.107][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-26 14:05:25.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.112][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-26 14:05:25.113][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-26 14:05:25.114][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-26 14:05:25.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.119][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-26 14:05:25.120][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-26 14:05:25.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.123][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-26 14:05:25.125][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-26 14:05:25.127][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-26 14:05:25.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.132][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-26 14:05:25.133][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-26 14:05:25.134][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-26 14:05:25.135][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-26 14:05:25.136][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-26 14:05:25.137][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-26 14:05:25.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.140][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-26 14:05:25.141][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-26 14:05:25.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.144][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-26 14:05:25.146][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-26 14:05:25.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.152][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-26 14:05:25.153][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-26 14:05:25.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.156][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-26 14:05:25.157][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-09-26 14:05:25.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.163][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-26 14:05:25.164][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-26 14:05:25.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.177][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-26 14:05:25.178][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-26 14:05:25.197][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-26 14:05:25.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.203][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-26 14:05:25.204][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-26 14:05:25.205][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-26 14:05:25.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.210][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-26 14:05:25.212][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.214][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-26 14:05:25.214][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.215][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:25.216][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.217][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.218][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.220][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.221][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-26 14:05:25.222][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:25.223][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.225][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-26 14:05:25.226][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:25.227][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.228][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.229][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 14:05:25.229][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-26 14:05:25.229][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-26 14:05:25.229][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-26 14:05:25.229][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-26 14:05:25.230][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 14:05:25.231][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:25.232][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:25.233][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:25.234][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:25.234][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:25.235][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.236][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.237][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:25.238][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:25.238][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.239][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.240][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-26 14:05:25.242][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.243][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-26 14:05:25.244][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.245][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:25.245][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.246][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.248][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.250][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.251][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-26 14:05:25.253][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:25.254][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.255][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-26 14:05:25.256][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:25.257][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.258][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.259][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 14:05:25.259][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-26 14:05:25.259][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-26 14:05:25.259][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-26 14:05:25.259][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-26 14:05:25.260][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 14:05:25.261][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:25.262][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:25.264][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:25.265][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:25.266][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:25.267][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.268][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.269][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:25.269][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:25.270][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.271][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.274][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-26 14:05:25.276][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.277][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-26 14:05:25.278][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.279][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:25.280][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.281][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.281][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.282][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.283][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-26 14:05:25.284][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:25.285][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.286][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-26 14:05:25.287][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:25.288][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.288][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.289][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.290][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 14:05:25.291][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:25.292][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:25.293][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:25.293][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:25.294][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:25.295][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.296][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.297][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:25.298][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:25.298][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.299][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.300][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-26 14:05:25.309][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.310][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-26 14:05:25.311][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.312][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:25.313][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.314][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.315][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.316][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.317][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-26 14:05:25.317][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:25.319][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.320][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-26 14:05:25.321][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:25.322][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.323][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.324][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.325][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 14:05:25.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:25.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:25.327][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:25.328][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:25.329][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:25.330][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.331][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.332][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:25.332][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:25.333][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.334][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.335][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 14:05:25.336][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.410][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-26 14:05:25.411][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-26 14:05:25.413][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-26 14:05:25.414][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-26 14:05:25.415][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-26 14:05:25.417][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-26 14:05:25.418][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-26 14:05:25.419][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-26 14:05:25.420][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-26 14:05:25.422][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-26 14:05:25.423][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-26 14:05:25.424][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-26 14:05:25.425][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-26 14:05:25.427][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-26 14:05:25.428][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-26 14:05:25.429][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-26 14:05:25.430][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-26 14:05:25.431][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-26 14:05:25.433][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-26 14:05:25.434][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-26 14:05:25.435][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-26 14:05:25.436][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-26 14:05:25.437][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-26 14:05:25.439][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-26 14:05:25.440][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-26 14:05:25.441][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-26 14:05:25.443][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-26 14:05:25.445][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-26 14:05:25.447][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-26 14:05:25.449][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-26 14:05:25.450][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-26 14:05:25.451][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-26 14:05:25.453][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-26 14:05:25.454][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-26 14:05:25.455][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-26 14:05:25.456][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-26 14:05:25.457][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-26 14:05:25.460][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-26 14:05:25.462][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-26 14:05:25.464][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-26 14:05:25.465][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-26 14:05:25.466][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-26 14:05:25.468][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-26 14:05:25.469][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-26 14:05:25.470][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-26 14:05:25.471][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-26 14:05:25.473][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-26 14:05:25.474][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-26 14:05:25.475][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-26 14:05:25.476][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-26 14:05:25.477][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-26 14:05:25.479][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-26 14:05:25.480][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-26 14:05:25.481][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-26 14:05:25.483][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-26 14:05:25.484][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-26 14:05:25.486][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-26 14:05:25.487][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-26 14:05:25.489][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-26 14:05:25.491][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-26 14:05:25.493][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-26 14:05:25.495][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-26 14:05:25.496][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-26 14:05:25.497][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-26 14:05:25.499][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-26 14:05:25.500][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-26 14:05:25.501][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-26 14:05:25.502][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-26 14:05:25.504][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-26 14:05:25.512][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-26 14:05:25.514][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-26 14:05:25.516][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-26 14:05:25.517][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-26 14:05:25.518][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-26 14:05:25.519][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-26 14:05:25.521][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-26 14:05:25.522][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-26 14:05:25.524][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-26 14:05:25.525][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-26 14:05:25.526][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-26 14:05:25.528][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-26 14:05:25.529][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-26 14:05:25.530][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-26 14:05:25.531][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-26 14:05:25.534][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-09-26 14:05:25.535][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 14:05:25.536][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.539][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:25.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:25.651][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-09-26 14:05:25.653][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 14:05:25.655][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.656][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.657][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.658][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:25.658][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.659][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-09-26 14:05:25.660][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.661][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.662][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-26 14:05:25.663][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:25.663][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.664][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-09-26 14:05:25.665][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-09-26 14:05:25.666][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-09-26 14:05:25.667][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:25.668][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 14:05:25.668][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-09-26 14:05:25.668][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-09-26 14:05:25.669][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-26 14:05:25.670][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:25.670][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:25.671][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:25.672][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:25.673][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:25.674][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:25.674][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-26 14:05:25.674][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-09-26 14:05:25.675][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:25.676][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:25.677][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:25.678][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:25.679][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-09-26 14:05:25.680][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-26 14:05:25.682][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-26 14:05:25.683][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-26 14:05:25.684][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-26 14:05:25.688][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 14:05:25.689][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-09-26 14:05:25.690][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 14:05:25.692][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 14:05:25.694][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:25.695][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:25.697][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-09-26 14:05:25.698][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-09-26 14:05:25.699][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-26 14:05:25.699][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-09-26 14:05:25.700][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:25.701][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:25.701][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-09-26 14:05:25.702][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-09-26 14:05:25.703][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 14:05:25.705][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 14:05:25.706][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:25.706][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:25.708][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 14:05:25.709][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:25.710][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-09-26 14:05:25.711][biodb::testThat]
biodb.INFO [2025-09-26 14:05:25.712][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-09-26 14:05:25.713][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:25.714][biodb::testThat]
biodb.DEBUG[2025-09-26 14:05:25.725][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:25.728][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:25.730][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 14:05:25.732][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:25.733][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 14:05:25.735][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 14:05:25.736][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 14:05:25.737][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 14:05:25.738][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 14:05:25.741][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-09-26 14:05:25.747][biodb::testThat]
biodb.INFO [2025-09-26 14:05:25.748][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-09-26 14:05:25.749][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:25.750][biodb::testThat]
biodb.DEBUG[2025-09-26 14:05:25.752][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-09-26 14:05:25.753][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-26 14:05:25.755][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:25.756][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-26 14:05:25.758][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-09-26 14:05:25.759][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-26 14:05:25.761][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-09-26 14:05:25.763][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-26 14:05:25.764][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 14:05:25.765][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 14:05:25.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:25.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:25.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:25.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:25.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:25.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:25.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 14:05:25.780][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:25.781][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:25.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.783][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:25.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:25.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.787][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:25.788][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:25.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.790][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.791][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:25.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:25.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.794][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:25.796][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:25.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.797][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.798][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:25.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:25.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.803][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:25.804][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:25.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.806][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.807][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:25.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:25.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:25.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:25.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.815][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:25.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:25.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.821][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:25.822][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:25.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.824][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:25.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:25.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.829][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:25.830][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:25.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.832][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.833][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:25.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:25.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:25.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:25.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.850][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:25.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:25.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.856][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:25.857][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:25.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.859][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:25.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:25.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.864][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:25.865][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:25.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.867][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:25.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:25.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.872][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:25.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:25.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.875][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:25.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:25.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.879][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:25.880][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:25.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.882][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:25.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:25.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.887][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:25.888][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:25.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.890][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:25.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:25.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.897][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:25.898][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:25.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.899][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:25.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:25.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.904][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:25.906][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:25.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.908][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:25.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:25.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.915][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:25.916][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:25.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.918][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:25.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:25.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.923][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:25.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:25.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.926][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.931][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 14:05:25.932][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:25.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.934][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 14:05:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:25.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:25.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:25.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:25.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.962][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:25.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:25.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.965][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:25.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:25.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.969][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:25.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:25.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.972][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:25.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:25.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.975][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:25.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:25.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:25.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:25.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:25.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:25.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:25.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:25.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:25.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:25.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:25.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:25.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:26.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:26.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:26.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:26.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:26.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:26.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:26.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:26.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:26.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:26.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:26.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:26.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:26.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:26.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:26.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:26.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:26.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:26.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.041][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:26.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:26.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.044][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:26.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:26.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.047][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:26.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:26.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:26.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:26.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:26.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:26.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:26.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:26.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:26.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:26.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:26.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:26.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:26.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:26.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:26.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.097][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:26.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:26.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:26.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:26.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:26.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:26.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:26.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:26.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:26.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:26.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:26.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:26.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:26.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:26.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:26.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:26.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:26.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:26.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:26.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:26.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:26.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:26.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.136][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:26.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:26.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.140][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:26.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:26.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.143][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:26.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:26.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:26.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:26.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:26.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:26.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:26.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:26.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.162][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 14:05:26.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.184][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 14:05:26.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:26.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:26.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:26.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:26.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:26.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:26.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:26.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:26.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:26.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:26.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:26.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.206][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:26.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.209][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:26.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:26.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:26.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:26.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.216][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:26.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:26.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:26.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:26.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:26.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:26.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:26.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:26.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:26.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:26.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:26.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:26.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:26.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:26.240][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-09-26 14:05:26.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:26.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:26.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:26.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:26.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:26.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-26 14:05:26.258][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-09-26 14:05:26.260][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-09-26 14:05:26.261][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-09-26 14:05:26.268][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-26 14:05:26.269][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.272][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.274][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-26 14:05:26.279][biodb::testContext]
biodb.INFO [2025-09-26 14:05:26.280][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 14:05:26.281][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-09-26 14:05:26.282][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-26 14:05:26.282][biodb::testContext]
biodb.INFO [2025-09-26 14:05:26.287][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-09-26 14:05:26.289][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-09-26 14:05:26.294][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 14:05:26.295][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-26 14:05:26.296][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-26 14:05:26.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.299][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-26 14:05:26.300][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-26 14:05:26.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.303][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-26 14:05:26.304][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-26 14:05:26.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.307][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-26 14:05:26.308][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-26 14:05:26.309][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-26 14:05:26.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.312][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-26 14:05:26.313][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-26 14:05:26.314][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-26 14:05:26.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.317][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-26 14:05:26.318][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-26 14:05:26.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.321][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-26 14:05:26.321][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-26 14:05:26.322][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-26 14:05:26.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.325][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-26 14:05:26.326][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-26 14:05:26.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.329][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-26 14:05:26.330][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-26 14:05:26.331][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-26 14:05:26.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.334][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-26 14:05:26.334][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-26 14:05:26.335][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-26 14:05:26.336][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-26 14:05:26.337][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-26 14:05:26.338][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-26 14:05:26.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.341][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-26 14:05:26.341][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-26 14:05:26.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.347][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-26 14:05:26.350][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-26 14:05:26.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.354][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-26 14:05:26.355][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-26 14:05:26.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.359][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-26 14:05:26.360][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-09-26 14:05:26.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.363][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-26 14:05:26.364][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-26 14:05:26.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.367][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-26 14:05:26.368][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-26 14:05:26.393][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-26 14:05:26.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.398][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-26 14:05:26.399][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-26 14:05:26.400][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-26 14:05:26.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.404][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-26 14:05:26.405][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.406][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-26 14:05:26.407][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.408][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:26.409][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.409][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.410][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.411][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.412][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-26 14:05:26.413][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:26.414][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.414][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-26 14:05:26.416][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:26.418][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.419][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.420][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 14:05:26.420][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-26 14:05:26.420][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-26 14:05:26.420][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-26 14:05:26.420][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-26 14:05:26.421][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 14:05:26.422][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:26.423][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:26.424][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:26.425][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:26.426][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:26.427][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.428][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.428][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:26.429][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:26.430][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.431][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.432][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-26 14:05:26.434][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.435][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-26 14:05:26.436][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.436][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:26.437][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.438][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.439][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.440][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.441][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-26 14:05:26.441][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:26.442][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.443][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-26 14:05:26.444][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:26.445][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.446][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.446][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 14:05:26.446][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-26 14:05:26.446][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-26 14:05:26.446][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-26 14:05:26.446][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-26 14:05:26.447][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 14:05:26.448][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:26.449][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:26.450][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:26.450][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:26.451][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:26.452][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.453][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.453][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:26.454][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:26.455][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.456][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.457][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-26 14:05:26.458][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.459][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-26 14:05:26.460][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.461][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:26.462][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.463][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.463][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.464][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.465][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-26 14:05:26.466][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:26.467][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.468][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-26 14:05:26.469][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:26.470][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.470][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.471][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.472][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 14:05:26.474][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:26.476][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:26.478][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:26.480][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:26.481][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:26.482][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.483][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.484][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:26.484][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:26.485][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.486][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.489][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-26 14:05:26.498][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.499][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-26 14:05:26.501][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.502][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:26.503][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.503][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.504][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.505][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.506][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-26 14:05:26.507][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:26.508][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.509][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-26 14:05:26.509][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:26.510][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.511][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.512][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.513][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-26 14:05:26.514][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:26.514][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:26.515][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:26.516][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:26.517][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:26.518][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.519][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.519][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:26.520][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:26.521][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.522][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.523][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 14:05:26.524][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.603][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-26 14:05:26.604][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-26 14:05:26.605][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-26 14:05:26.606][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-26 14:05:26.608][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-26 14:05:26.609][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-26 14:05:26.610][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-26 14:05:26.611][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-26 14:05:26.612][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-26 14:05:26.613][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-26 14:05:26.615][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-26 14:05:26.617][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-26 14:05:26.619][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-26 14:05:26.621][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-26 14:05:26.623][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-26 14:05:26.624][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-26 14:05:26.625][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-26 14:05:26.627][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-26 14:05:26.628][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-26 14:05:26.629][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-26 14:05:26.631][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-26 14:05:26.632][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-26 14:05:26.633][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-26 14:05:26.635][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-26 14:05:26.636][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-26 14:05:26.638][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-26 14:05:26.641][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-26 14:05:26.643][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-26 14:05:26.644][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-26 14:05:26.645][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-26 14:05:26.648][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-26 14:05:26.650][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-26 14:05:26.651][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-26 14:05:26.653][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-26 14:05:26.654][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-26 14:05:26.655][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-26 14:05:26.656][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-26 14:05:26.658][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-26 14:05:26.659][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-26 14:05:26.660][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-26 14:05:26.661][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-26 14:05:26.665][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-26 14:05:26.666][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-26 14:05:26.668][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-26 14:05:26.670][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-26 14:05:26.671][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-26 14:05:26.672][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-26 14:05:26.674][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-26 14:05:26.675][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-26 14:05:26.676][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-26 14:05:26.677][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-26 14:05:26.679][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-26 14:05:26.680][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-26 14:05:26.681][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-26 14:05:26.682][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-26 14:05:26.683][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-26 14:05:26.684][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-26 14:05:26.686][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-26 14:05:26.687][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-26 14:05:26.688][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-26 14:05:26.689][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-26 14:05:26.691][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-26 14:05:26.692][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-26 14:05:26.693][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-26 14:05:26.702][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-26 14:05:26.703][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-26 14:05:26.705][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-26 14:05:26.706][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-26 14:05:26.707][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-26 14:05:26.709][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-26 14:05:26.710][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-26 14:05:26.712][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-26 14:05:26.713][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-26 14:05:26.714][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-26 14:05:26.715][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-26 14:05:26.717][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-26 14:05:26.718][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-26 14:05:26.719][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-26 14:05:26.720][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-26 14:05:26.721][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-26 14:05:26.723][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-26 14:05:26.724][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-26 14:05:26.725][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-26 14:05:26.727][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-26 14:05:26.729][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-09-26 14:05:26.731][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-26 14:05:26.731][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.733][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-26 14:05:26.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:26.853][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-09-26 14:05:26.855][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 14:05:26.857][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.858][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.859][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.860][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-26 14:05:26.861][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.861][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-09-26 14:05:26.862][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.863][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.864][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-26 14:05:26.865][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-26 14:05:26.866][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.867][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-09-26 14:05:26.867][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-09-26 14:05:26.868][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-09-26 14:05:26.870][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-26 14:05:26.870][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-26 14:05:26.870][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-09-26 14:05:26.870][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-09-26 14:05:26.871][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-26 14:05:26.872][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:26.873][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:26.874][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-26 14:05:26.875][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-26 14:05:26.875][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-26 14:05:26.876][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-26 14:05:26.877][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-26 14:05:26.877][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-09-26 14:05:26.878][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:26.878][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:26.879][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-26 14:05:26.880][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-26 14:05:26.881][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-09-26 14:05:26.883][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-26 14:05:26.885][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-26 14:05:26.887][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-26 14:05:26.889][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-26 14:05:26.892][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 14:05:26.893][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-09-26 14:05:26.894][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 14:05:26.896][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 14:05:26.897][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:26.898][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:26.899][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-09-26 14:05:26.900][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-09-26 14:05:26.900][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-09-26 14:05:26.900][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-09-26 14:05:26.901][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-26 14:05:26.902][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-26 14:05:26.903][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-09-26 14:05:26.914][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-09-26 14:05:26.916][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-09-26 14:05:26.917][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 14:05:26.919][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:26.920][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:26.921][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-09-26 14:05:26.922][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-26 14:05:26.923][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-09-26 14:05:26.924][biodb::testThat]
biodb.INFO [2025-09-26 14:05:26.925][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-09-26 14:05:26.926][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-26 14:05:26.927][biodb::testThat]
biodb.DEBUG[2025-09-26 14:05:26.929][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-09-26 14:05:26.930][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-09-26 14:05:26.931][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-09-26 14:05:26.934][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:26.935][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:26.936][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 14:05:26.938][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:26.939][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 14:05:26.940][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 14:05:26.941][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 14:05:26.942][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 14:05:26.943][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 14:05:26.944][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 14:05:26.944][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-09-26 14:05:26.946][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-09-26 14:05:26.947][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-26 14:05:26.948][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:26.950][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-26 14:05:26.952][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-09-26 14:05:26.953][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-26 14:05:26.955][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-09-26 14:05:26.956][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-26 14:05:26.957][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 14:05:26.958][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 14:05:26.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:26.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:26.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:26.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:26.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:26.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:26.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 14:05:26.974][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:26.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:26.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.977][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.981][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:26.982][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:26.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.984][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.985][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:26.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:26.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.988][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:26.989][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:26.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.991][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.992][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:26.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:26.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.995][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:26.996][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:26.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:26.998][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:26.999][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.007][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.013][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.014][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.024][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.034][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.035][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.037][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.040][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.046][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.047][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.048][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.053][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.054][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.056][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.060][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.061][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.064][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.070][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:27.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:27.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.073][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.074][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:27.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:27.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:27.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:27.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.081][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:27.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:27.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.088][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.093][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.094][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.095][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.103][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.108][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.114][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.115][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.116][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.121][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:27.122][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:27.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.124][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:27.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:27.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.128][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 14:05:27.129][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.147][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.149][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 14:05:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.167][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.170][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.173][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.177][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.180][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.183][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.245][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.258][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.263][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.266][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:27.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:27.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:27.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:27.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:27.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:27.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:27.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:27.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:27.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:27.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:27.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:27.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.301][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.304][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.307][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.344][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.347][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.357][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:27.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:27.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:27.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:27.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:27.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.376][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 14:05:27.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.390][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 14:05:27.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.416][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:27.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:27.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.419][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:27.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.426][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:27.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:27.456][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-09-26 14:05:27.457][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.470][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.476][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.481][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:27.484][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 14:05:27.485][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 14:05:27.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:27.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:27.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:27.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:27.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:27.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:27.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:27.497][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-09-26 14:05:27.498][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-09-26 14:05:27.500][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:27.501][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-09-26 14:05:27.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-09-26 14:05:27.504][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-26 14:05:27.506][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-09-26 14:05:27.507][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-09-26 14:05:27.508][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-09-26 14:05:27.509][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-09-26 14:05:27.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:27.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:27.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:27.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:27.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:27.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:27.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 14:05:27.524][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.528][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.533][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.534][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.535][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.536][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.541][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.542][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.545][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.546][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.550][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.551][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.552][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.553][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.560][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.566][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.567][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.569][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.576][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.577][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.579][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.580][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.593][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.597][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.602][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.603][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.605][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.609][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.610][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.612][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.616][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:27.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:27.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.619][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:27.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:27.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:27.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:27.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.630][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:27.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:27.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.638][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.647][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.652][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.654][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.659][ef$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.660][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.661][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.666][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:27.667][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:27.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.668][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:27.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:27.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.673][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 14:05:27.674][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.675][ef$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.676][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-09-26 14:05:27.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.699][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.704][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.708][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-26 14:05:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.711][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.718][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-09-26 14:05:27.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-26 14:05:27.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-09-26 14:05:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-09-26 14:05:27.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-09-26 14:05:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-09-26 14:05:27.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.773][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.776][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.779][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:27.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:27.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:27.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-26 14:05:27.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-26 14:05:27.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:27.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:27.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:27.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:27.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-26 14:05:27.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-26 14:05:27.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.831][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.834][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.838][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-26 14:05:27.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-26 14:05:27.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-09-26 14:05:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.875][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.880][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.884][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-09-26 14:05:27.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:27.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:27.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.896][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-26 14:05:27.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-26 14:05:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.910][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 14:05:27.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.926][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-09-26 14:05:27.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-26 14:05:27.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-26 14:05:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-26 14:05:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.948][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:27.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:27.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.951][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:27.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:27.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.961][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:27.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-09-26 14:05:27.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-26 14:05:27.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-26 14:05:27.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:27.994][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-09-26 14:05:27.995][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:27.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:27.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:27.998][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:27.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.001][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.005][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:28.008][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 14:05:28.015][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-09-26 14:05:28.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:28.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:28.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:28.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:28.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:28.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:28.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:28.036][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-09-26 14:05:28.038][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-09-26 14:05:28.039][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-09-26 14:05:28.042][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:28.045][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:28.047][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 14:05:28.048][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:28.049][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 14:05:28.050][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 14:05:28.051][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 14:05:28.052][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 14:05:28.053][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 14:05:28.054][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 14:05:28.055][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-26 14:05:28.058][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.062][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.066][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.069][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.072][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.076][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.079][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:28.082][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 14:05:28.083][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 14:05:28.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:28.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:28.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:28.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:28.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:28.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:28.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 14:05:28.098][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.103][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.106][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.120][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.123][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:28.127][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-09-26 14:05:28.128][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 14:05:28.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:28.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:28.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:28.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:28.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:28.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:28.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-26 14:05:28.159][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-09-26 14:05:28.161][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-09-26 14:05:28.161][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-09-26 14:05:28.163][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:28.165][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:28.166][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-09-26 14:05:28.167][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-09-26 14:05:28.168][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-09-26 14:05:28.169][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-09-26 14:05:28.170][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-09-26 14:05:28.171][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-09-26 14:05:28.172][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-09-26 14:05:28.173][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-09-26 14:05:28.173][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-09-26 14:05:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.178][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.182][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.185][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.192][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.195][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:28.200][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-09-26 14:05:28.202][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-09-26 14:05:28.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:28.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:28.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:28.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:28.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:28.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:28.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-26 14:05:28.215][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.220][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.229][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.233][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.237][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-26 14:05:28.240][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-09-26 14:05:28.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-09-26 14:05:28.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-26 14:05:28.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-26 14:05:28.243][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-09-26 14:05:28.244][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-09-26 14:05:28.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-26 14:05:28.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:28.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:28.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:28.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:28.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:28.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-26 14:05:28.273][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-09-26 14:05:28.275][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-09-26 14:05:28.276][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-09-26 14:05:28.277][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-26 14:05:28.278][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-26 14:05:28.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-26 14:05:28.279][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-26 14:05:28.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-26 14:05:28.281][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-26 14:05:28.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  8.448   0.570  11.009

CHECK results for biodbHmdb on kjohnson1

Summary

Command output

Installation output

Tests output

Example timings