Vincent Carey
| Snapshot Date: 2025-06-19 09:00 -0400 (Thu, 19 Jun 2025) |
| git_url: https://git.bioconductor.org/packages/scviR |
| git_branch: devel |
| git_last_commit: 5dd474c |
| git_last_commit_date: 2025-05-12 05:55:48 -0400 (Mon, 12 May 2025) |
| Back to --- experimental! --- GPU-enabled build/check report for BioC 3.22 Report updated every 6 hours |
This page was generated on 2025-06-19 10:45 -0400 (Thu, 19 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| biocgpu | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 Patched (2025-05-01 r88189) -- "How About a Twenty-Six" | 280 |
| amarone | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 282 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 3/3 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| scviR 1.9.11 (landing page) Vincent Carey
| biocgpu | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | | |||||||
| amarone | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
|
To the developers/maintainers of the scviR package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: scviR |
| Version: 1.9.11 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scviR |
| StartedAt: 2025-06-19 13:59:49 -0000 (Thu, 19 Jun 2025) |
| EndedAt: 2025-06-19 14:00:20 -0000 (Thu, 19 Jun 2025) |
| EllapsedTime: 31.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scviR
###
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* checking for file ‘scviR/DESCRIPTION’ ... OK
* preparing ‘scviR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘citeseq_tut.Rmd’ using rmarkdown
--- finished re-building ‘citeseq_tut.Rmd’
--- re-building ‘compch12.Rmd’ using rmarkdown
Quitting from compch12.Rmd:49-53 [getdat2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `use_python()`:
! Specified version of python '/home/biocbuild/.cache/R/basilisk/1.21.5/scviR/1.9.11/bsklenv/bin/python' does not exist.
---
Backtrace:
▆
1. └─scviR::getTotalVI5k10kAdata()
2. └─scviR::anndataR()
3. └─basilisk::basiliskStart(bsklenv, testload = "anndata")
4. └─basilisk::useBasiliskEnv(envpath, full.activation)
5. └─reticulate::use_virtualenv(envpath, required = TRUE)
6. └─reticulate::use_python(python, required = required)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'compch12.Rmd' failed with diagnostics:
Specified version of python '/home/biocbuild/.cache/R/basilisk/1.21.5/scviR/1.9.11/bsklenv/bin/python' does not exist.
--- failed re-building ‘compch12.Rmd’
--- re-building ‘new_citeseq.Rmd’ using rmarkdown
Quitting from new_citeseq.Rmd:41-48 [doe44]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `use_python()`:
! Specified version of python '/home/biocbuild/.cache/R/basilisk/1.21.5/scviR/1.9.11/bsklenv/bin/python' does not exist.
---
Backtrace:
▆
1. └─scviR::muonR()
2. └─basilisk::basiliskStart(bsklenv, testload = "anndata")
3. └─basilisk::useBasiliskEnv(envpath, full.activation)
4. └─reticulate::use_virtualenv(envpath, required = TRUE)
5. └─reticulate::use_python(python, required = required)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'new_citeseq.Rmd' failed with diagnostics:
Specified version of python '/home/biocbuild/.cache/R/basilisk/1.21.5/scviR/1.9.11/bsklenv/bin/python' does not exist.
--- failed re-building ‘new_citeseq.Rmd’
--- re-building ‘scviR.Rmd’ using rmarkdown
--- finished re-building ‘scviR.Rmd’
SUMMARY: processing the following files failed:
‘compch12.Rmd’ ‘new_citeseq.Rmd’
Error: Vignette re-building failed.
Execution halted