Multiple platform build/check report for BioC 3.22 - INSTALL results for metahdep on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4810
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"	4548
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4528
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for metahdep on taishan

To the developers/maintainers of the metahdep package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metahdep.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: metahdep

Version: 1.67.0

Command: /home/biocbuild/R/R/bin/R CMD INSTALL metahdep

StartedAt: 2025-06-16 20:04:23 -0000 (Mon, 16 Jun 2025)

EndedAt: 2025-06-16 20:04:29 -0000 (Mon, 16 Jun 2025)

EllapsedTime: 6.1 seconds

RetCode: 1

Status: ERROR

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL metahdep
###
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* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘metahdep’ ...
** this is package ‘metahdep’ version ‘1.67.0’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function ‘get_row_indices2’:
/home/biocbuild/R/R-4.5.0/include/Rinternals.h:203:17: error: passing argument 5 of ‘metan_binary_search_unique’ makes integer from pointer without a cast [-Wint-conversion]
  203 | #define CHAR(x) R_CHAR(x)
      |                 ^~~~~~~~~
      |                 |
      |                 const char *
metahdep.c:471:107: note: in expansion of macro ‘CHAR’
  471 |                                 index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
      |                                                                                                           ^~~~
metahdep.c:372:103: note: expected ‘char’ but argument is of type ‘const char *’
  372 | SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
      |                                                                                                  ~~~~~^~~~~~~~~~~~
make: *** [/home/biocbuild/R/R-4.5.0/etc/Makeconf:202: metahdep.o] Error 1
ERROR: compilation failed for package ‘metahdep’
* removing ‘/home/biocbuild/R/R-4.5.0/site-library/metahdep’