Multiple platform build/check report for BioC 3.22 - BUILD results for metahdep on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4810
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"	4548
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4528
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for metahdep on palomino8

To the developers/maintainers of the metahdep package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metahdep.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: metahdep

Version: 1.67.0

Command: chmod a+r metahdep -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data metahdep

StartedAt: 2025-06-18 20:14:49 -0400 (Wed, 18 Jun 2025)

EndedAt: 2025-06-18 20:14:52 -0400 (Wed, 18 Jun 2025)

EllapsedTime: 3.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r metahdep -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data metahdep
###
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* checking for file 'metahdep/DESCRIPTION' ... OK
* preparing 'metahdep':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'metahdep' ...
** this is package 'metahdep' version '1.67.0'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
F:/biocbuild/bbs-3.22-bioc/R/include/Rinternals.h:203:17: error: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
  203 | #define CHAR(x) R_CHAR(x)
      |                 ^~~~~~~~~
      |                 |
      |                 const char *
metahdep.c:471:107: note: in expansion of macro 'CHAR'
  471 |                                 index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
      |                                                                                                           ^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
  372 | SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
      |                                                                                                  ~~~~~^~~~~~~~~~~~
make: *** [F:/biocbuild/bbs-3.22-bioc/R/etc/x64/Makeconf:289: metahdep.o] Error 1
ERROR: compilation failed for package 'metahdep'
* removing 'F:/biocbuild/bbs-3.22-bioc/tmpdir/Rtmp0qxQN2/Rinst7c9027213d61/metahdep'
      -----------------------------------
ERROR: package installation failed