Multiple platform build/check report for BioC 3.22 - CHECK results for graper on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4818
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4553
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4595
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4537
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on kjohnson3

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.25.2

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.25.2.tar.gz

StartedAt: 2025-08-08 19:42:51 -0400 (Fri, 08 Aug 2025)

EndedAt: 2025-08-08 19:43:17 -0400 (Fri, 08 Aug 2025)

EllapsedTime: 26.3 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.25.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.1 Patched (2025-06-14 r88325)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.25.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘graper’ ...
** this is package ‘graper’ version ‘1.25.2’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fit_graper.cpp -o fit_graper.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-856.147
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-546.765
ELB improved by 309.382

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-491.201
ELB improved by 55.5645

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.467
ELB improved by 30.7336

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.484
ELB improved by 12.9835

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.112
ELB improved by 5.37217

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.066
ELB improved by 3.04576

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.851
ELB improved by 2.21436

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.046
ELB improved by 1.80495

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.494
ELB improved by 1.55208

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.133
ELB improved by 1.36178

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.933
ELB improved by 1.1999

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.877
ELB improved by 1.05527

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.953
ELB improved by 0.92432

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.147
ELB improved by 0.805615

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.449
ELB improved by 0.698297

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.847
ELB improved by 0.601801

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.332
ELB improved by 0.515798

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.891
ELB improved by 0.440072

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.517
ELB improved by 0.374347

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.199
ELB improved by 0.318132

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.928
ELB improved by 0.27068

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.697
ELB improved by 0.23103

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.499
ELB improved by 0.198118

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.328
ELB improved by 0.170883

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.18
ELB improved by 0.148348

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.05
ELB improved by 0.129662

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.936
ELB improved by 0.114109

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.835
ELB improved by 0.101105

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.745
ELB improved by 0.090174

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.664
ELB improved by 0.0809343

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.591
ELB improved by 0.0730789

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.525
ELB improved by 0.0663609

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.464
ELB improved by 0.0605815

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.408
ELB improved by 0.05558

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.357
ELB improved by 0.0512265

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.31
ELB improved by 0.0474157

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.266
ELB improved by 0.0440619

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.225
ELB improved by 0.0410954

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.186
ELB improved by 0.0384592

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.15
ELB improved by 0.0361065

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.116
ELB improved by 0.0339988

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.084
ELB improved by 0.0321041

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.054
ELB improved by 0.0303962

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.025
ELB improved by 0.0288528

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.997
ELB improved by 0.0274555

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.971
ELB improved by 0.0261886

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.946
ELB improved by 0.0250388

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.922
ELB improved by 0.0239948

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.899
ELB improved by 0.0230469

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.877
ELB improved by 0.0221868

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.855
ELB improved by 0.0214073

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.835
ELB improved by 0.0207021

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.815
ELB improved by 0.0200659

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.795
ELB improved by 0.0194939

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.776
ELB improved by 0.0189822

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.758
ELB improved by 0.0185273

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.739
ELB improved by 0.0181261

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.722
ELB improved by 0.0177761

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.704
ELB improved by 0.0174752

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.687
ELB improved by 0.0172217

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.67
ELB improved by 0.0170144

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.653
ELB improved by 0.0168521

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.636
ELB improved by 0.0167343

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.62
ELB improved by 0.0166609

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.603
ELB improved by 0.016632

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.586
ELB improved by 0.0166483

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.57
ELB improved by 0.0167108

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.553
ELB improved by 0.016821

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.536
ELB improved by 0.0169811

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.519
ELB improved by 0.0171938

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.501
ELB improved by 0.0174625

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.483
ELB improved by 0.0177913

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.465
ELB improved by 0.0181854

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.447
ELB improved by 0.0186509

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.427
ELB improved by 0.0191951

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.408
ELB improved by 0.0198267

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.387
ELB improved by 0.0205559

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.366
ELB improved by 0.0213949

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.343
ELB improved by 0.0223576

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.32
ELB improved by 0.0234606

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.295
ELB improved by 0.0247226

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.269
ELB improved by 0.0261653

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.241
ELB improved by 0.027813

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.211
ELB improved by 0.0296934

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.18
ELB improved by 0.0318365

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.145
ELB improved by 0.0342757

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.108
ELB improved by 0.0370467

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.068
ELB improved by 0.0401876

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.024
ELB improved by 0.043739

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.977
ELB improved by 0.047744

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.924
ELB improved by 0.0522487

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.867
ELB improved by 0.0573032

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.804
ELB improved by 0.0629625

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.735
ELB improved by 0.0692875

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.658
ELB improved by 0.076345

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.574
ELB improved by 0.0842061

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.481
ELB improved by 0.092943

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.379
ELB improved by 0.102624

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.265
ELB improved by 0.113304

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.14
ELB improved by 0.125024

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.003
ELB improved by 0.137805

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.851
ELB improved by 0.151662

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.684
ELB improved by 0.166643

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.501
ELB improved by 0.182898

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.301
ELB improved by 0.200832

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.079
ELB improved by 0.221341

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.833
ELB improved by 0.246231

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.554
ELB improved by 0.278813

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.23
ELB improved by 0.32446

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.84
ELB improved by 0.389774

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.364
ELB improved by 0.476359

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.799
ELB improved by 0.56467

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.193
ELB improved by 0.60597

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.625
ELB improved by 0.567746

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.152
ELB improved by 0.473406

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.788
ELB improved by 0.364204

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.519
ELB improved by 0.2685

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.322
ELB improved by 0.196979

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.174
ELB improved by 0.147593

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.061
ELB improved by 0.113725

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.972
ELB improved by 0.0892211

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.901
ELB improved by 0.0701443

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.847
ELB improved by 0.0547979

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.804
ELB improved by 0.0428653

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.769
ELB improved by 0.0343615

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.74
ELB improved by 0.028999

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.714
ELB improved by 0.0260658

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.69
ELB improved by 0.0245672

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.666
ELB improved by 0.0234522

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.644
ELB improved by 0.0218922

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.625
ELB improved by 0.0195316

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.608
ELB improved by 0.0165387

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.595
ELB improved by 0.0133863

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.584
ELB improved by 0.0105333

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.576
ELB improved by 0.00823145

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-863.292
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-577.542
ELB improved by 285.75

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-515.743
ELB improved by 61.7992

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-473.861
ELB improved by 41.8815

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.924
ELB improved by 18.9375

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.188
ELB improved by 8.73549

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.274
ELB improved by 5.91426

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.842
ELB improved by 5.43157

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.144
ELB improved by 5.69802

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.1
ELB improved by 6.04419

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.154
ELB improved by 5.94577

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.018
ELB improved by 5.13581

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.021
ELB improved by 3.99788

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.946
ELB improved by 3.07478

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.656
ELB improved by 2.29018

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.083
ELB improved by 1.57241

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.018
ELB improved by 1.06494

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.265
ELB improved by 0.753005

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.701
ELB improved by 0.564306

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.256
ELB improved by 0.444915

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.892
ELB improved by 0.363953

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.587
ELB improved by 0.304714

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.329
ELB improved by 0.258164

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.11
ELB improved by 0.219645

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.922
ELB improved by 0.187133

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.762
ELB improved by 0.159941

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.625
ELB improved by 0.137672

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.505
ELB improved by 0.119719

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.4
ELB improved by 0.105284

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.306
ELB improved by 0.0935773

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.222
ELB improved by 0.0839488

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.146
ELB improved by 0.0759118

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.077
ELB improved by 0.0691154

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.014
ELB improved by 0.0633061

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.956
ELB improved by 0.0582966

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.902
ELB improved by 0.0539447

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.852
ELB improved by 0.0501395

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.805
ELB improved by 0.0467929

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.761
ELB improved by 0.0438339

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.72
ELB improved by 0.0412042

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.681
ELB improved by 0.038856

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.644
ELB improved by 0.0367493

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.609
ELB improved by 0.0348508

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.576
ELB improved by 0.0331325

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.545
ELB improved by 0.0315708

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.514
ELB improved by 0.0301458

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.486
ELB improved by 0.0288404

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.458
ELB improved by 0.0276402

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.431
ELB improved by 0.026533

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.406
ELB improved by 0.0255083

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.381
ELB improved by 0.0245572

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.358
ELB improved by 0.0236719

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.335
ELB improved by 0.0228459

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.313
ELB improved by 0.0220737

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.291
ELB improved by 0.0213504

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.271
ELB improved by 0.0206717

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.251
ELB improved by 0.0200341

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.231
ELB improved by 0.0194345

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.212
ELB improved by 0.0188701

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.194
ELB improved by 0.0183386

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.176
ELB improved by 0.0178377

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.159
ELB improved by 0.0173657

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.142
ELB improved by 0.0169208

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.125
ELB improved by 0.0165015

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.109
ELB improved by 0.0161065

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.094
ELB improved by 0.0157344

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.078
ELB improved by 0.0153842

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.063
ELB improved by 0.0150547

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.048
ELB improved by 0.0147451

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.034
ELB improved by 0.0144545

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.02
ELB improved by 0.0141821

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.006
ELB improved by 0.0139273

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.992
ELB improved by 0.0136893

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.979
ELB improved by 0.0134679

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.965
ELB improved by 0.0132626

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.952
ELB improved by 0.0130733

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.939
ELB improved by 0.0128998

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.927
ELB improved by 0.0127423

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.914
ELB improved by 0.0126011

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.902
ELB improved by 0.0124769

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.889
ELB improved by 0.0123707

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.877
ELB improved by 0.0122837

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.865
ELB improved by 0.012218

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.853
ELB improved by 0.012176

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.84
ELB improved by 0.0121612

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.828
ELB improved by 0.0121781

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.816
ELB improved by 0.012233

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.804
ELB improved by 0.0123341

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.791
ELB improved by 0.0124928

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.778
ELB improved by 0.0127247

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.765
ELB improved by 0.0130515

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.752
ELB improved by 0.0135042

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.738
ELB improved by 0.0141272

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.723
ELB improved by 0.0149864

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.707
ELB improved by 0.0161795

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.689
ELB improved by 0.0178551

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.668
ELB improved by 0.0202404

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.645
ELB improved by 0.0236805

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.616
ELB improved by 0.0286852

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.58
ELB improved by 0.0359471

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.534
ELB improved by 0.0462299

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.474
ELB improved by 0.0599197

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.398
ELB improved by 0.0761323

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.306
ELB improved by 0.0920672

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.202
ELB improved by 0.104258

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.09
ELB improved by 0.111444

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.975
ELB improved by 0.115343

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.856
ELB improved by 0.118432

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.734
ELB improved by 0.122159

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.607
ELB improved by 0.126805

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.475
ELB improved by 0.13189

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.339
ELB improved by 0.13652

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.199
ELB improved by 0.139709

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.059
ELB improved by 0.140707

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.919
ELB improved by 0.139206

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.784
ELB improved by 0.135311

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.655
ELB improved by 0.12936

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.533
ELB improved by 0.121743

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.42
ELB improved by 0.112826

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.317
ELB improved by 0.10296

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.225
ELB improved by 0.0925183

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.143
ELB improved by 0.0819006

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.071
ELB improved by 0.0715022

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.01
ELB improved by 0.061672

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.957
ELB improved by 0.0526775

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.912
ELB improved by 0.0446914

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.874
ELB improved by 0.0377977

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.842
ELB improved by 0.0320114

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.815
ELB improved by 0.0273031

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.791
ELB improved by 0.0236223

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.771
ELB improved by 0.0209176

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.751
ELB improved by 0.0191495

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.733
ELB improved by 0.0182939

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.715
ELB improved by 0.0183298

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.696
ELB improved by 0.0192002

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.675
ELB improved by 0.0207418

iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.652
ELB improved by 0.0225987

iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.628
ELB improved by 0.0241944

iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.603
ELB improved by 0.0248638

iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.579
ELB improved by 0.0241473

iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.557
ELB improved by 0.0220344

iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.538
ELB improved by 0.018938

iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.523
ELB improved by 0.0154541

iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.51
ELB improved by 0.0121194

iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.501
ELB improved by 0.00927619

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-843.446
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-558.902
ELB improved by 284.545

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-500.081
ELB improved by 58.8208

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.796
ELB improved by 30.2847

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.736
ELB improved by 12.0599

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.682
ELB improved by 6.05425

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.917
ELB improved by 4.76499

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.938
ELB improved by 4.97911

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.194
ELB improved by 5.74391

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.664
ELB improved by 6.53044

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.017
ELB improved by 6.64683

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.418
ELB improved by 5.59888

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.57
ELB improved by 3.84755

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.163
ELB improved by 2.40694

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.604
ELB improved by 1.55983

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.503
ELB improved by 1.10048

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.661
ELB improved by 0.842314

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.973
ELB improved by 0.687377

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.386
ELB improved by 0.587956

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.865
ELB improved by 0.520243

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.394
ELB improved by 0.471671

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.958
ELB improved by 0.43516

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.552
ELB improved by 0.406504

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.169
ELB improved by 0.38314

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.805
ELB improved by 0.363516

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.459
ELB improved by 0.346732

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.126
ELB improved by 0.33231

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.806
ELB improved by 0.320026

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.496
ELB improved by 0.309793

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.195
ELB improved by 0.301574

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.9
ELB improved by 0.295326

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.609
ELB improved by 0.290964

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.32
ELB improved by 0.288356

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.033
ELB improved by 0.287346

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.745
ELB improved by 0.287842

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.455
ELB improved by 0.290028

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.16
ELB improved by 0.294852

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.855
ELB improved by 0.305097

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.528
ELB improved by 0.327302

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.155
ELB improved by 0.372501

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.712
ELB improved by 0.443121

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.213
ELB improved by 0.499067

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.723
ELB improved by 0.489889

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.286
ELB improved by 0.437301

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.905
ELB improved by 0.380999

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.572
ELB improved by 0.332853

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.278
ELB improved by 0.293849

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.014
ELB improved by 0.264649

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.767
ELB improved by 0.246967

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.524
ELB improved by 0.242821

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.273
ELB improved by 0.250776

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.016
ELB improved by 0.257163

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.778
ELB improved by 0.238265

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.586
ELB improved by 0.191657

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.445
ELB improved by 0.140957

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.343
ELB improved by 0.101667

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.269
ELB improved by 0.0745759

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.212
ELB improved by 0.0562508

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.169
ELB improved by 0.0437085

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.134
ELB improved by 0.0349549

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.105
ELB improved by 0.0287082

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.081
ELB improved by 0.0241394

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.06
ELB improved by 0.0207076

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.042
ELB improved by 0.018058

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.026
ELB improved by 0.0159572

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.012
ELB improved by 0.0142509

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.999
ELB improved by 0.0128357

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.987
ELB improved by 0.0116413

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.977
ELB improved by 0.0106188

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.967
ELB improved by 0.00973365

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-881.398
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-565.654
ELB improved by 315.744

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-502.45
ELB improved by 63.2043

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.354
ELB improved by 39.0962

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.695
ELB improved by 18.6592

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.853
ELB improved by 8.8417

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.763
ELB improved by 5.09031

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.165
ELB improved by 3.59752

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.223
ELB improved by 2.94193

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.551
ELB improved by 2.67189

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.969
ELB improved by 2.5823

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.377
ELB improved by 2.59197

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.705
ELB improved by 2.67234

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.91
ELB improved by 2.79435

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.01
ELB improved by 2.90043

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.124
ELB improved by 2.8855

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.488
ELB improved by 2.63595

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.315
ELB improved by 2.17352

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.651
ELB improved by 1.66405

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.403
ELB improved by 1.24821

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.439
ELB improved by 0.963362

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.654
ELB improved by 0.785524

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.977
ELB improved by 0.67674

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.369
ELB improved by 0.608016

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.805
ELB improved by 0.563708

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.269
ELB improved by 0.536435

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.748
ELB improved by 0.521316

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.233
ELB improved by 0.514352

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.72
ELB improved by 0.512859

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.205
ELB improved by 0.515305

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.685
ELB improved by 0.520531

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.158
ELB improved by 0.527012

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.625
ELB improved by 0.532458

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.091
ELB improved by 0.53382

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.564
ELB improved by 0.527688

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.052
ELB improved by 0.51108

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.57
ELB improved by 0.482435

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.128
ELB improved by 0.442413

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.734
ELB improved by 0.394001

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.392
ELB improved by 0.341683

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.102
ELB improved by 0.290072

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.859
ELB improved by 0.242758

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.657
ELB improved by 0.201868

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.489
ELB improved by 0.168254

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.347
ELB improved by 0.141942

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.225
ELB improved by 0.122474

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.116
ELB improved by 0.108958

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.016
ELB improved by 0.0997093

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.924
ELB improved by 0.0917907

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.842
ELB improved by 0.0816682

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.775
ELB improved by 0.0678212

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.722
ELB improved by 0.0524406

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.683
ELB improved by 0.0389631

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.654
ELB improved by 0.0289489

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.632
ELB improved by 0.0220616

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.615
ELB improved by 0.0173866

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.601
ELB improved by 0.014145

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.589
ELB improved by 0.0118184

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.579
ELB improved by 0.0100868

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.57
ELB improved by 0.00875508

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  0.994   0.088   1.102

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.028	0.005	0.033
getPIPs	0.027	0.004	0.031
graper	0.044	0.006	0.050
makeExampleData	0.004	0.000	0.004
makeExampleDataWithUnequalGroups	0.004	0.000	0.004
plotELBO	0.095	0.006	0.108
plotGroupPenalties	0.230	0.004	0.236
plotPosterior	0.167	0.005	0.179
predict.graper	1.022	0.020	1.090
print.graper	0.027	0.004	0.030