Multiple platform build/check report for BioC 3.22 - CHECK results for graper on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4853
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4640
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4585
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4576
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on kjohnson3

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.25.2

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.25.2.tar.gz

StartedAt: 2025-10-03 19:47:22 -0400 (Fri, 03 Oct 2025)

EndedAt: 2025-10-03 19:47:51 -0400 (Fri, 03 Oct 2025)

EllapsedTime: 29.4 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.25.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.25.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘graper’ ...
** this is package ‘graper’ version ‘1.25.2’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fit_graper.cpp -o fit_graper.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-886.801
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-584.025
ELB improved by 302.777

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-523.866
ELB improved by 60.1587

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-484.336
ELB improved by 39.5298

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.656
ELB improved by 19.6798

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.548
ELB improved by 10.1081

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.5
ELB improved by 7.04795

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.808
ELB improved by 6.69228

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.97
ELB improved by 6.83792

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.49
ELB improved by 6.47975

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.058
ELB improved by 5.43197

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.881
ELB improved by 4.17767

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.823
ELB improved by 3.0575

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.707
ELB improved by 2.11615

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.274
ELB improved by 1.43339

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.275
ELB improved by 0.998429

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.547
ELB improved by 0.728528

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.992
ELB improved by 0.554816

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.555
ELB improved by 0.43672

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.203
ELB improved by 0.352503

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.912
ELB improved by 0.290381

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.669
ELB improved by 0.243493

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.461
ELB improved by 0.207491

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.282
ELB improved by 0.179428

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.125
ELB improved by 0.157243

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.985
ELB improved by 0.139475

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.86
ELB improved by 0.125077

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.747
ELB improved by 0.113291

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.643
ELB improved by 0.103563

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.548
ELB improved by 0.0954769

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.459
ELB improved by 0.0887173

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.376
ELB improved by 0.0830411

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.298
ELB improved by 0.0782578

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.224
ELB improved by 0.0742164

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.153
ELB improved by 0.070796

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.085
ELB improved by 0.0678989

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.019
ELB improved by 0.0654455

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.956
ELB improved by 0.0633708

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.894
ELB improved by 0.0616218

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.834
ELB improved by 0.060155

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.775
ELB improved by 0.0589352

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.717
ELB improved by 0.0579343

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.66
ELB improved by 0.0571305

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.604
ELB improved by 0.0565074

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.548
ELB improved by 0.0560538

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.492
ELB improved by 0.0557633

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.436
ELB improved by 0.055634

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.381
ELB improved by 0.0556685

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.325
ELB improved by 0.0558735

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.269
ELB improved by 0.0562602

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.212
ELB improved by 0.0568441

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.154
ELB improved by 0.0576456

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.095
ELB improved by 0.0586899

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.035
ELB improved by 0.060008

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.974
ELB improved by 0.0616376

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.91
ELB improved by 0.0636239

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.844
ELB improved by 0.0660222

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.775
ELB improved by 0.0688997

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.703
ELB improved by 0.0723394

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.626
ELB improved by 0.0764446

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.545
ELB improved by 0.0813454

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.458
ELB improved by 0.087206

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.364
ELB improved by 0.0942332

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.261
ELB improved by 0.102682

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.148
ELB improved by 0.112851

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.023
ELB improved by 0.125067

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.883
ELB improved by 0.139648

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.726
ELB improved by 0.156947

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.549
ELB improved by 0.177661

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.345
ELB improved by 0.203627

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.107
ELB improved by 0.23808

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.827
ELB improved by 0.280406

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.515
ELB improved by 0.312116

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.21
ELB improved by 0.304434

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.948
ELB improved by 0.262482

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.732
ELB improved by 0.215184

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.557
ELB improved by 0.175883

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.412
ELB improved by 0.144841

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.292
ELB improved by 0.119898

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.192
ELB improved by 0.0993475

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.11
ELB improved by 0.0820887

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.043
ELB improved by 0.0674538

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.988
ELB improved by 0.0550524

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.943
ELB improved by 0.0446463

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.907
ELB improved by 0.0360503

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.878
ELB improved by 0.0290736

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.855
ELB improved by 0.0235025

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.835
ELB improved by 0.019111

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.82
ELB improved by 0.0156795

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.807
ELB improved by 0.0130103

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.796
ELB improved by 0.0109357

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.787
ELB improved by 0.00931928

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-909.397
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-581.295
ELB improved by 328.101

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-522.038
ELB improved by 59.2573

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.164
ELB improved by 36.8736

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.402
ELB improved by 15.7619

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.135
ELB improved by 6.26748

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.467
ELB improved by 3.66772

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.484
ELB improved by 2.98371

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.653
ELB improved by 2.8303

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.772
ELB improved by 2.8813

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.716
ELB improved by 3.05616

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.42
ELB improved by 3.29603

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.945
ELB improved by 3.4747

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.564
ELB improved by 3.38154

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.658
ELB improved by 2.90588

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.41
ELB improved by 2.24768

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.695
ELB improved by 1.71528

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.269
ELB improved by 1.42542

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.934
ELB improved by 1.33483

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.553
ELB improved by 1.38131

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.026
ELB improved by 1.52746

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.3
ELB improved by 1.72619

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.407
ELB improved by 1.89204

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.431
ELB improved by 1.97653

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.436
ELB improved by 1.99535

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.479
ELB improved by 1.95709

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.62
ELB improved by 1.85875

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.924
ELB improved by 1.69603

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.456
ELB improved by 1.4678

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.255
ELB improved by 1.20113

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.312
ELB improved by 0.943207

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.584
ELB improved by 0.727167

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.021
ELB improved by 0.563607

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.571
ELB improved by 0.449551

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.194
ELB improved by 0.377095

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.857
ELB improved by 0.337614

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.535
ELB improved by 0.321895

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.216
ELB improved by 0.318417

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.901
ELB improved by 0.314899

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.598
ELB improved by 0.303385

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.316
ELB improved by 0.281793

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.06
ELB improved by 0.255946

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.816
ELB improved by 0.243737

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.543
ELB improved by 0.273961

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.164
ELB improved by 0.378207

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.659
ELB improved by 0.505027

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.182
ELB improved by 0.477205

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.839
ELB improved by 0.342651

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.607
ELB improved by 0.232637

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.445
ELB improved by 0.161798

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.327
ELB improved by 0.118048

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.235
ELB improved by 0.0915384

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.16
ELB improved by 0.0754938

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.094
ELB improved by 0.065806

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.034
ELB improved by 0.060247

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.976
ELB improved by 0.0576918

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.919
ELB improved by 0.0575863

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.859
ELB improved by 0.0595893

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.796
ELB improved by 0.0632593

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.728
ELB improved by 0.0677202

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.657
ELB improved by 0.0714147

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.584
ELB improved by 0.0722944

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.516
ELB improved by 0.0687721

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.455
ELB improved by 0.0609737

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.404
ELB improved by 0.0509355

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.362
ELB improved by 0.0412538

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.329
ELB improved by 0.0335892

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.3
ELB improved by 0.0283269

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.275
ELB improved by 0.0251034

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.252
ELB improved by 0.0233732

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.229
ELB improved by 0.0226775

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.207
ELB improved by 0.0226879

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.183
ELB improved by 0.0231566

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.16
ELB improved by 0.0238538

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.135
ELB improved by 0.0245287

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.11
ELB improved by 0.0249156

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.085
ELB improved by 0.0247928

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.061
ELB improved by 0.0240679

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.038
ELB improved by 0.0228296

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.017
ELB improved by 0.0213207

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.997
ELB improved by 0.0198477

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.979
ELB improved by 0.0186934

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.961
ELB improved by 0.018084

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.942
ELB improved by 0.0182159

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.923
ELB improved by 0.0193246

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.901
ELB improved by 0.0217842

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.875
ELB improved by 0.0262426

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.841
ELB improved by 0.0337971

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.795
ELB improved by 0.046124

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.73
ELB improved by 0.0651219

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.639
ELB improved by 0.0908832

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.522
ELB improved by 0.117132

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.392
ELB improved by 0.129689

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.272
ELB improved by 0.119747

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.174
ELB improved by 0.0985875

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.089
ELB improved by 0.0848807

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.999
ELB improved by 0.0895204

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.878
ELB improved by 0.121739

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.684
ELB improved by 0.193433

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.402
ELB improved by 0.282205

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.109
ELB improved by 0.292654

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.892
ELB improved by 0.217348

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.747
ELB improved by 0.145179

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.647
ELB improved by 0.0997816

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.574
ELB improved by 0.0727098

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.518
ELB improved by 0.0568554

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.47
ELB improved by 0.0480089

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.426
ELB improved by 0.0434172

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.385
ELB improved by 0.0409601

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.346
ELB improved by 0.0387638

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.311
ELB improved by 0.0353518

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.281
ELB improved by 0.0302357

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.257
ELB improved by 0.0241626

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.238
ELB improved by 0.0184083

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.224
ELB improved by 0.013813

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.214
ELB improved by 0.0105182

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.206
ELB improved by 0.00827746

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-842.762
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-574.458
ELB improved by 268.305

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-512.257
ELB improved by 62.2003

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.139
ELB improved by 43.1184

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.452
ELB improved by 19.687

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.698
ELB improved by 7.75426

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.674
ELB improved by 4.02386

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.692
ELB improved by 2.98135

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.999
ELB improved by 2.69381

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.331
ELB improved by 2.66785

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.593
ELB improved by 2.73738

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.797
ELB improved by 2.79646

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.061
ELB improved by 2.73585

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.589
ELB improved by 2.47218

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.564
ELB improved by 2.02486

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.039
ELB improved by 1.52496

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.936
ELB improved by 1.10339

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.131
ELB improved by 0.80466

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.523
ELB improved by 0.608401

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.043
ELB improved by 0.479717

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.65
ELB improved by 0.392982

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.317
ELB improved by 0.333351

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.024
ELB improved by 0.292386

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.759
ELB improved by 0.265234

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.51
ELB improved by 0.249383

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.266
ELB improved by 0.243864

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.017
ELB improved by 0.248525

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.754
ELB improved by 0.263329

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.466
ELB improved by 0.287778

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.145
ELB improved by 0.320705

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.785
ELB improved by 0.360173

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.382
ELB improved by 0.402793

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.939
ELB improved by 0.443833

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.458
ELB improved by 0.480883

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.941
ELB improved by 0.51687

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.384
ELB improved by 0.55662

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.782
ELB improved by 0.602337

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.128
ELB improved by 0.65332

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.421
ELB improved by 0.707484

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.659
ELB improved by 0.76203

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.846
ELB improved by 0.813327

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.989
ELB improved by 0.856972

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.1
ELB improved by 0.888906

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.192
ELB improved by 0.907944

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.273
ELB improved by 0.919048

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.339
ELB improved by 0.933562

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.387
ELB improved by 0.95211

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.461
ELB improved by 0.926362

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.647
ELB improved by 0.81369

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.979
ELB improved by 0.667895

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.446
ELB improved by 0.533446

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.031
ELB improved by 0.414785

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.705
ELB improved by 0.325802

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.421
ELB improved by 0.283715

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.118
ELB improved by 0.3033

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.714
ELB improved by 0.404577

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.178
ELB improved by 0.535499

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.663
ELB improved by 0.515485

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.278
ELB improved by 0.385009

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.99
ELB improved by 0.287325

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.788
ELB improved by 0.202257

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.665
ELB improved by 0.122755

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.593
ELB improved by 0.0717538

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.546
ELB improved by 0.046951

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.51
ELB improved by 0.0360141

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.479
ELB improved by 0.0310328

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.451
ELB improved by 0.0283576

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.425
ELB improved by 0.0264097

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.4
ELB improved by 0.0245063

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.378
ELB improved by 0.0224017

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.358
ELB improved by 0.0201025

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.34
ELB improved by 0.0177491

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.324
ELB improved by 0.0155116

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.311
ELB improved by 0.0135163

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.299
ELB improved by 0.0118187

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.289
ELB improved by 0.0104155

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.279
ELB improved by 0.00927006

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-875.262
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-581.893
ELB improved by 293.369

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-523.152
ELB improved by 58.741

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-482.919
ELB improved by 40.2332

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.631
ELB improved by 16.2878

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.122
ELB improved by 5.50902

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.302
ELB improved by 2.82057

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.317
ELB improved by 1.98492

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.613
ELB improved by 1.70411

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.981
ELB improved by 1.63126

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.328
ELB improved by 1.65334

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.597
ELB improved by 1.73103

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.747
ELB improved by 1.84954

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.75
ELB improved by 1.99785

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.598
ELB improved by 2.15148

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.341
ELB improved by 2.25672

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.108
ELB improved by 2.23305

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.09
ELB improved by 2.01855

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.449
ELB improved by 1.64043

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.236
ELB improved by 1.21335

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.391
ELB improved by 0.844539

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.819
ELB improved by 0.572621

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.431
ELB improved by 0.388003

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.162
ELB improved by 0.268889

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.967
ELB improved by 0.1951

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.816
ELB improved by 0.150345

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.693
ELB improved by 0.123003

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.588
ELB improved by 0.105784

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.493
ELB improved by 0.0944849

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.406
ELB improved by 0.0867544

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.325
ELB improved by 0.0812721

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.248
ELB improved by 0.0772811

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.174
ELB improved by 0.0743354

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.101
ELB improved by 0.0721657

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.031
ELB improved by 0.0706052

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.961
ELB improved by 0.0695487

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.892
ELB improved by 0.0689299

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.824
ELB improved by 0.0687082

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.755
ELB improved by 0.0688615

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.685
ELB improved by 0.0693821

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.615
ELB improved by 0.0702741

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.544
ELB improved by 0.0715527

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.47
ELB improved by 0.0732432

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.395
ELB improved by 0.0753807

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.317
ELB improved by 0.07801

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.236
ELB improved by 0.0811852

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.151
ELB improved by 0.0849688

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.061
ELB improved by 0.0894309

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.967
ELB improved by 0.0946479

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.866
ELB improved by 0.1007

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.758
ELB improved by 0.107672

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.643
ELB improved by 0.115648

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.518
ELB improved by 0.124712

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.383
ELB improved by 0.134946

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.237
ELB improved by 0.146424

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.077
ELB improved by 0.159206

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.904
ELB improved by 0.173324

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.715
ELB improved by 0.188771

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.51
ELB improved by 0.205483

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.286
ELB improved by 0.223339

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.044
ELB improved by 0.242163

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.782
ELB improved by 0.261759

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.501
ELB improved by 0.281926

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.198
ELB improved by 0.302392

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.876
ELB improved by 0.322485

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.535
ELB improved by 0.340438

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.182
ELB improved by 0.352815

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.827
ELB improved by 0.355365

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.482
ELB improved by 0.345456

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.158
ELB improved by 0.323184

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.868
ELB improved by 0.290187

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.619
ELB improved by 0.249634

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.412
ELB improved by 0.207099

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.243
ELB improved by 0.168545

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.106
ELB improved by 0.13722

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.993
ELB improved by 0.113246

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.897
ELB improved by 0.0952017

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.816
ELB improved by 0.081486

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.745
ELB improved by 0.0708415

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.683
ELB improved by 0.0624057

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.627
ELB improved by 0.0556174

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.577
ELB improved by 0.0501156

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.531
ELB improved by 0.0456641

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.489
ELB improved by 0.0421015

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.45
ELB improved by 0.0393094

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.413
ELB improved by 0.0371931

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.377
ELB improved by 0.035667

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.342
ELB improved by 0.0346395

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.308
ELB improved by 0.0339978

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.275
ELB improved by 0.0335921

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.241
ELB improved by 0.0332285

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.209
ELB improved by 0.0326826

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.177
ELB improved by 0.0317418

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.147
ELB improved by 0.0302699

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.118
ELB improved by 0.0282602

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.093
ELB improved by 0.025839

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.069
ELB improved by 0.0232125

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.049
ELB improved by 0.0205903

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.031
ELB improved by 0.0181295

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.015
ELB improved by 0.0159172

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.001
ELB improved by 0.0139819

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.988
ELB improved by 0.0123152

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.978
ELB improved by 0.0108902

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.968
ELB improved by 0.00967439

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  1.035   0.077   1.121

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.029	0.004	0.033
getPIPs	0.027	0.004	0.031
graper	0.051	0.006	0.058
makeExampleData	0.004	0.001	0.005
makeExampleDataWithUnequalGroups	0.005	0.000	0.005
plotELBO	0.128	0.006	0.135
plotGroupPenalties	0.426	0.009	0.435
plotPosterior	0.214	0.007	0.223
predict.graper	1.035	0.024	1.060
print.graper	0.027	0.004	0.031