Back to Multiple platform build/check report for BioC 3.22:   simplified   long
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This page was generated on 2025-06-12 12:09 -0400 (Thu, 12 Jun 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4795
palomino8Windows Server 2022 Datacenterx644.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" 4536
lconwaymacOS 12.7.1 Montereyx86_644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4574
kjohnson3macOS 13.7.1 Venturaarm644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4513
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 205/2309HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.15.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-06-11 13:25 -0400 (Wed, 11 Jun 2025)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: devel
git_last_commit: 9920d92
git_last_commit_date: 2025-04-15 12:42:50 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  

CHECK results for biodbHmdb on lconway

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.15.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.15.0.tar.gz
StartedAt: 2025-06-11 19:15:17 -0400 (Wed, 11 Jun 2025)
EndedAt: 2025-06-11 19:16:42 -0400 (Wed, 11 Jun 2025)
EllapsedTime: 85.0 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.15.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.5.0 Patched (2025-04-21 r88169)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.22-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.15.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-06-11 19:16:00.282][biodb::testContext]
biodb.INFO [2025-06-11 19:16:00.287][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 19:16:00.289][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-06-11 19:16:00.290][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 19:16:00.292][biodb::testContext]
biodb.INFO [2025-06-11 19:16:00.294][biodb::testThat]
biodb.INFO [2025-06-11 19:16:00.295][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-06-11 19:16:00.296][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:00.297][biodb::testThat]
biodb.INFO [2025-06-11 19:16:00.430][biodb::testContext]
biodb.INFO [2025-06-11 19:16:00.431][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 19:16:00.432][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-06-11 19:16:00.434][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 19:16:00.435][biodb::testContext]
biodb.INFO [2025-06-11 19:16:00.444][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.0.
biodb.DEBUG[2025-06-11 19:16:00.447][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-06-11 19:16:00.456][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 19:16:00.457][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-06-11 19:16:00.458][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-06-11 19:16:00.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.462][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-06-11 19:16:00.492][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-06-11 19:16:00.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.497][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-06-11 19:16:00.498][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-06-11 19:16:00.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.501][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-06-11 19:16:00.502][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-06-11 19:16:00.503][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-06-11 19:16:00.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.507][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-06-11 19:16:00.508][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-06-11 19:16:00.509][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-06-11 19:16:00.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.512][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-06-11 19:16:00.513][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-06-11 19:16:00.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.517][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-06-11 19:16:00.519][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-06-11 19:16:00.520][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-06-11 19:16:00.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.525][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-06-11 19:16:00.526][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-06-11 19:16:00.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.530][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-06-11 19:16:00.531][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-06-11 19:16:00.532][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-06-11 19:16:00.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.535][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-06-11 19:16:00.536][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-06-11 19:16:00.537][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-06-11 19:16:00.538][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-06-11 19:16:00.539][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-06-11 19:16:00.540][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-06-11 19:16:00.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.544][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-06-11 19:16:00.546][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-06-11 19:16:00.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.550][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-06-11 19:16:00.551][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-06-11 19:16:00.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.556][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-06-11 19:16:00.557][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-06-11 19:16:00.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.562][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-06-11 19:16:00.563][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-06-11 19:16:00.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.566][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-06-11 19:16:00.567][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-06-11 19:16:00.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.571][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-06-11 19:16:00.572][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-06-11 19:16:00.597][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-06-11 19:16:00.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.602][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-06-11 19:16:00.603][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-06-11 19:16:00.604][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-06-11 19:16:00.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.611][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-06-11 19:16:00.654][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:00.675][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-06-11 19:16:00.676][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.677][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:00.679][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.680][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 19:16:00.682][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:00.683][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:00.684][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 19:16:00.685][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:00.686][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.687][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-06-11 19:16:00.688][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:00.689][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.690][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.691][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 19:16:00.691][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 19:16:00.691][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 19:16:00.691][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 19:16:00.691][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 19:16:00.693][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 19:16:00.694][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:00.695][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:00.696][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:00.697][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:00.698][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:00.700][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:00.701][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.702][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:00.703][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:00.704][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:00.705][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.707][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-06-11 19:16:00.709][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:00.717][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 19:16:00.718][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.719][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:00.720][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.722][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 19:16:00.723][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:00.724][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:00.725][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 19:16:00.726][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:00.727][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.729][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-06-11 19:16:00.730][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:00.731][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.732][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.733][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 19:16:00.733][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 19:16:00.733][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 19:16:00.733][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 19:16:00.733][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 19:16:00.734][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 19:16:00.736][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:00.737][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:00.738][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:00.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:00.741][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:00.742][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:00.743][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.744][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:00.745][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:00.746][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:00.747][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.749][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-06-11 19:16:00.751][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.752][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-06-11 19:16:00.754][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.755][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:00.756][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.758][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 19:16:00.759][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:00.760][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:00.761][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 19:16:00.762][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:00.764][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:00.765][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-06-11 19:16:00.766][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:00.767][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.768][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.769][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.771][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 19:16:00.772][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:00.773][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:00.774][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:00.776][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:00.776][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:00.778][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:00.779][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.780][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:00.781][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:00.782][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:00.784][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.785][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-06-11 19:16:00.787][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.788][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 19:16:00.790][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.791][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:00.792][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.794][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 19:16:00.794][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:00.795][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:00.796][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 19:16:00.797][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:00.798][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:00.800][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-06-11 19:16:00.801][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:00.802][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.803][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:00.805][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.806][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 19:16:00.807][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:00.808][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:00.810][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:00.811][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:00.812][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:00.813][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:00.814][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.815][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:00.816][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:00.817][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:00.818][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:00.823][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 19:16:00.824][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:00.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:00.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:00.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:00.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:00.930][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-06-11 19:16:00.936][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-06-11 19:16:00.938][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-06-11 19:16:00.940][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-06-11 19:16:00.942][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-11 19:16:00.944][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 19:16:00.952][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-06-11 19:16:00.954][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-06-11 19:16:00.956][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-06-11 19:16:00.958][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 19:16:00.960][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 19:16:00.961][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-06-11 19:16:00.963][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-06-11 19:16:00.965][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-06-11 19:16:00.967][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-06-11 19:16:00.969][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 19:16:00.970][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-06-11 19:16:00.972][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-06-11 19:16:00.973][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-11 19:16:00.975][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-06-11 19:16:00.977][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-06-11 19:16:00.979][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-06-11 19:16:00.980][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-06-11 19:16:00.982][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-06-11 19:16:00.983][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-06-11 19:16:00.985][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-06-11 19:16:00.987][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-06-11 19:16:00.988][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-06-11 19:16:00.990][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-06-11 19:16:00.991][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-06-11 19:16:00.992][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-06-11 19:16:00.994][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-06-11 19:16:00.996][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-06-11 19:16:00.998][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-06-11 19:16:01.000][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-06-11 19:16:01.001][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-06-11 19:16:01.003][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-06-11 19:16:01.005][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-06-11 19:16:01.007][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-06-11 19:16:01.009][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-06-11 19:16:01.010][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-06-11 19:16:01.012][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-06-11 19:16:01.013][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-06-11 19:16:01.015][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-06-11 19:16:01.017][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-06-11 19:16:01.018][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-06-11 19:16:01.020][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-06-11 19:16:01.021][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-06-11 19:16:01.024][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-06-11 19:16:01.025][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-06-11 19:16:01.027][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-06-11 19:16:01.029][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-06-11 19:16:01.030][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-06-11 19:16:01.032][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-06-11 19:16:01.034][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-06-11 19:16:01.035][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-06-11 19:16:01.037][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-06-11 19:16:01.039][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-06-11 19:16:01.041][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-06-11 19:16:01.042][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-06-11 19:16:01.044][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-06-11 19:16:01.045][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-06-11 19:16:01.047][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-06-11 19:16:01.048][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-06-11 19:16:01.049][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-06-11 19:16:01.051][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-06-11 19:16:01.052][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-11 19:16:01.054][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-11 19:16:01.055][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-06-11 19:16:01.057][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-06-11 19:16:01.059][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-06-11 19:16:01.061][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-06-11 19:16:01.062][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-06-11 19:16:01.064][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-06-11 19:16:01.066][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-06-11 19:16:01.068][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-06-11 19:16:01.070][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-06-11 19:16:01.072][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-06-11 19:16:01.074][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-06-11 19:16:01.075][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-06-11 19:16:01.077][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-06-11 19:16:01.078][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-06-11 19:16:01.079][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-06-11 19:16:01.087][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-06-11 19:16:01.090][initialize] This is biodb version 1.17.0.
biodb.DEBUG[2025-06-11 19:16:01.094][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 19:16:01.095][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.097][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:01.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:01.278][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-06-11 19:16:01.291][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 19:16:01.294][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:01.295][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-06-11 19:16:01.297][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:01.299][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:01.300][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:01.301][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-06-11 19:16:01.302][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:01.303][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:01.305][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-06-11 19:16:01.306][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:01.307][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:01.308][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-06-11 19:16:01.310][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-06-11 19:16:01.311][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-06-11 19:16:01.313][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:01.314][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 19:16:01.314][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-06-11 19:16:01.314][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-06-11 19:16:01.315][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-06-11 19:16:01.316][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:01.317][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:01.318][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:01.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:01.320][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:01.321][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:01.322][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 19:16:01.322][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-06-11 19:16:01.323][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:01.325][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:01.326][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:01.327][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:01.336][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-06-11 19:16:01.338][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 19:16:01.341][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 19:16:01.343][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 19:16:01.345][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 19:16:01.374][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 19:16:01.375][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-06-11 19:16:01.379][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 19:16:01.384][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 19:16:01.389][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:01.391][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:01.393][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-06-11 19:16:01.394][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-06-11 19:16:01.395][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 19:16:01.395][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-06-11 19:16:01.396][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:01.397][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:01.398][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-06-11 19:16:01.399][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-06-11 19:16:01.400][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 19:16:01.424][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 19:16:01.432][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:01.433][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:01.434][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 19:16:01.436][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:01.437][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-06-11 19:16:01.446][biodb::testThat]
biodb.INFO [2025-06-11 19:16:01.448][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-06-11 19:16:01.450][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:01.451][biodb::testThat]
biodb.TRACE[2025-06-11 19:16:01.457][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-06-11 19:16:01.459][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 19:16:01.463][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 19:16:01.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:01.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:01.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:01.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:01.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:01.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:01.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 19:16:01.499][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:01.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:01.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.504][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:01.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:01.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.529][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:01.530][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:01.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.533][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.564][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:01.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:01.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.569][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:01.570][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:01.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.572][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.573][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:01.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:01.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.577][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:01.578][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:01.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.580][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.582][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:01.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:01.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:01.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:01.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.590][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:01.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:01.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.596][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:01.597][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:01.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.600][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:01.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:01.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:01.608][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:01.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.610][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.611][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:01.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:01.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.615][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:01.617][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:01.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.620][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:01.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:01.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.625][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:01.627][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:01.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.629][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:01.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:01.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.645][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:01.646][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:01.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.648][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:01.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:01.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.655][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:01.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:01.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.658][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:01.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:01.666][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:01.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.668][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:01.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:01.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:01.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:01.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.677][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:01.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:01.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.682][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:01.683][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:01.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.685][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:01.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:01.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.691][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:01.693][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:01.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.695][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:01.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.700][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:01.702][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:01.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.704][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.705][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:01.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:01.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.710][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:01.711][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:01.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.713][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:01.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:01.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.719][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 19:16:01.721][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:01.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.723][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.725][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 19:16:01.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:01.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:01.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:01.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:01.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:01.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:01.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:01.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.781][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:01.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:01.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.787][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:01.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:01.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.791][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:01.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:01.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.820][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:01.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:01.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.835][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:01.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:01.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.851][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:01.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:01.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:01.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:01.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:01.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:01.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:01.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:01.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:01.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:01.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:01.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:01.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:01.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:01.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:01.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:01.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:01.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:01.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:01.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:01.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:01.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:01.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:01.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:01.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:01.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:01.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:01.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:01.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:01.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:01.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:01.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:01.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.930][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:01.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:01.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.936][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:01.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:01.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.940][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:01.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:01.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:01.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:01.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:01.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:01.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:01.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:01.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:01.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:01.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:01.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:01.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:01.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:01.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:01.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:01.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:01.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:01.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:01.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:01.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.989][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:01.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:01.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.993][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:01.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:01.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:01.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:01.998][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:01.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:02.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.048][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.052][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.057][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:02.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:02.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:02.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:02.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:02.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.074][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 19:16:02.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.092][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 19:16:02.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.140][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.145][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.149][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.158][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:02.196][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-06-11 19:16:02.199][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 19:16:02.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 19:16:02.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.203][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 19:16:02.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 19:16:02.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.208][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-11 19:16:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-11 19:16:02.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.214][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-11 19:16:02.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-11 19:16:02.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.249][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.292][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.296][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.301][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:02.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.329][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.330][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.332][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.348][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.354][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.358][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.363][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.364][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.366][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.367][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:02.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:02.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:02.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:02.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:02.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:02.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:02.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.405][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:02.406][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:02.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.407][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:02.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:02.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.442][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:02.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:02.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:02.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:02.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:02.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:02.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:02.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.480][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:02.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.497][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:02.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:02.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.502][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:02.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:02.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.507][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:02.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.511][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:02.512][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:02.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.515][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.516][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:02.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:02.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.548][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.549][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.551][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:02.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.567][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:02.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:02.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.571][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:02.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:02.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.589][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:02.590][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:02.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.592][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.594][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:02.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:02.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:02.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:02.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:02.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:02.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:02.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:02.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.626][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:02.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:02.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.629][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:02.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:02.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.644][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:02.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:02.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.649][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:02.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:02.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.653][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:02.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:02.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.658][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:02.659][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:02.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.661][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.663][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:02.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:02.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.695][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:02.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:02.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:02.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:02.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:02.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:02.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:02.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.725][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:02.726][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:02.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.728][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:02.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:02.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:02.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:02.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:02.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:02.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:02.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:02.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.760][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:02.767][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:02.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.769][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:02.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:02.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:02.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:02.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:02.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:02.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:02.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:02.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.797][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:02.798][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:02.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.800][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:02.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:02.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:02.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:02.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:02.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:02.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:02.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.829][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:02.839][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:02.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.841][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:02.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:02.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:02.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:02.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:02.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:02.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:02.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:02.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.871][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:02.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:02.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.873][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:02.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:02.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.903][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.906][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.923][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:02.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:02.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.928][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.933][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:02.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:02.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.938][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:02.939][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:02.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.941][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.942][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:02.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:02.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.963][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:02.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:02.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.968][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.974][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:02.976][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:02.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.978][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.985][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:02.987][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:02.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:02.990][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:02.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:02.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:03.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.001][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.009][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:03.010][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:03.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.013][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.020][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:03.021][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:03.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.024][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.030][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:03.031][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:03.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.033][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.040][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:03.041][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:03.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.044][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.051][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:03.053][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:03.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.055][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.061][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:03.062][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:03.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.064][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.071][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:03.072][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:03.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.075][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.082][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.085][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.091][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:03.092][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:03.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.094][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.101][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:03.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:03.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.105][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.112][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.115][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.122][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:03.124][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:03.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.126][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.134][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:03.136][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:03.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.138][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.146][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:03.148][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:03.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.151][ef$get] fields variable is a list.
biodb.INFO [2025-06-11 19:16:03.171][biodb::testThat]
biodb.INFO [2025-06-11 19:16:03.173][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-06-11 19:16:03.175][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:03.176][biodb::testThat]
biodb.DEBUG[2025-06-11 19:16:03.193][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-06-11 19:16:03.204][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 19:16:03.210][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:03.212][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 19:16:03.214][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-06-11 19:16:03.216][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-06-11 19:16:03.218][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-06-11 19:16:03.220][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 19:16:03.246][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 19:16:03.248][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 19:16:03.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:03.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:03.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:03.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:03.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:03.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:03.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 19:16:03.279][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:03.280][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:03.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.281][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:03.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.286][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:03.287][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:03.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.288][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.290][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:03.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:03.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.294][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:03.295][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:03.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.297][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:03.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.303][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:03.304][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:03.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.305][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.307][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:03.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:03.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:03.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:03.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.313][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:03.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:03.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.319][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:03.320][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:03.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.321][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:03.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:03.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.326][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:03.327][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:03.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.329][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.330][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:03.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:03.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:03.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:03.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.338][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:03.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:03.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.351][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:03.352][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:03.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.355][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:03.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:03.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.362][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:03.364][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:03.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.366][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:03.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:03.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.372][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:03.374][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:03.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.376][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:03.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:03.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.382][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:03.384][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:03.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.386][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:03.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:03.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.394][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.395][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.398][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.406][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:03.407][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:03.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.409][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:03.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.416][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.418][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.420][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.422][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.427][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:03.429][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:03.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.430][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.432][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:03.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.436][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:03.438][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:03.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.440][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:03.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:03.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.445][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 19:16:03.447][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:03.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.449][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 19:16:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:03.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:03.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:03.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:03.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:03.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:03.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:03.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.469][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:03.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:03.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.473][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:03.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:03.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.478][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:03.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:03.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.484][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:03.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:03.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.489][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:03.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:03.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.493][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:03.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:03.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:03.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:03.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:03.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:03.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:03.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:03.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:03.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:03.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:03.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:03.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:03.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:03.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:03.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:03.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:03.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:03.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:03.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:03.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:03.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:03.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:03.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:03.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:03.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:03.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:03.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:03.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:03.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:03.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.578][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:03.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:03.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.583][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:03.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:03.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.588][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:03.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:03.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:03.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:03.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:03.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:03.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:03.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:03.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:03.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:03.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:03.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:03.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:03.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.633][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:03.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:03.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.637][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:03.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.642][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:03.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:03.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:03.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:03.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:03.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:03.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:03.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:03.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:03.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:03.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:03.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:03.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:03.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:03.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.698][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:03.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:03.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.704][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:03.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:03.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.710][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:03.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:03.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:03.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:03.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:03.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:03.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:03.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:03.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.733][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 19:16:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.755][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 19:16:03.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:03.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.790][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:03.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:03.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.795][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:03.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:03.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:03.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:03.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.804][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:03.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:03.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:03.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:03.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:03.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:03.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:03.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:03.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:03.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:03.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:03.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:03.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:03.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:03.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:03.843][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-06-11 19:16:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-06-11 19:16:03.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-06-11 19:16:03.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-06-11 19:16:03.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-06-11 19:16:03.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-06-11 19:16:03.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-06-11 19:16:03.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-11 19:16:03.870][biodb::testThat]
biodb.INFO [2025-06-11 19:16:03.871][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-06-11 19:16:03.873][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:03.874][biodb::testThat]
biodb.TRACE[2025-06-11 19:16:03.878][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.883][ef$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:03.885][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-06-11 19:16:03.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:03.953][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-06-11 19:16:03.955][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-06-11 19:16:03.956][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-06-11 19:16:03.957][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-06-11 19:16:03.959][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:03.961][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:03.963][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 19:16:03.965][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:03.966][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 19:16:03.968][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 19:16:03.970][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 19:16:03.971][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 19:16:03.973][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 19:16:03.974][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 19:16:03.975][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 19:16:03.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:03.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:03.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:03.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:03.997][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 19:16:03.998][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 19:16:04.000][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-06-11 19:16:04.023][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:04.025][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:04.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.033][ef$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:04.035][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-06-11 19:16:04.055][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:04.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:04.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.061][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:04.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:04.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.067][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:04.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:04.076][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-06-11 19:16:04.158][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-06-11 19:16:04.160][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-06-11 19:16:04.161][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-06-11 19:16:04.183][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:04.185][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:04.187][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 19:16:04.189][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:04.190][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 19:16:04.211][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 19:16:04.213][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 19:16:04.214][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 19:16:04.216][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 19:16:04.217][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 19:16:04.218][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 19:16:04.220][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:04.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.226][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:04.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.232][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:04.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:04.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.238][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:04.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:04.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:04.243][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 19:16:04.244][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 19:16:04.245][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-06-11 19:16:04.266][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.268][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.271][ef$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:04.273][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-06-11 19:16:04.299][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.305][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.310][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:04.319][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-06-11 19:16:04.321][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-06-11 19:16:04.322][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-06-11 19:16:04.323][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-06-11 19:16:04.325][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:04.327][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:04.330][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 19:16:04.332][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:04.333][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 19:16:04.335][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 19:16:04.337][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 19:16:04.338][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 19:16:04.340][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 19:16:04.341][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 19:16:04.342][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 19:16:04.345][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.350][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.355][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.360][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:04.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:04.365][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 19:16:04.366][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 19:16:04.368][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-06-11 19:16:04.394][biodb::testThat]
biodb.INFO [2025-06-11 19:16:04.396][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-06-11 19:16:04.397][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:04.398][biodb::testThat]
biodb.TRACE[2025-06-11 19:16:04.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:04.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:04.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:04.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:04.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:04.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:04.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:04.451][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-06-11 19:16:04.453][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-06-11 19:16:04.454][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-06-11 19:16:04.457][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:04.459][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:04.462][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 19:16:04.464][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:04.465][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 19:16:04.467][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 19:16:04.469][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 19:16:04.470][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 19:16:04.472][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 19:16:04.473][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 19:16:04.474][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 19:16:04.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:04.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:04.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:04.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:04.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:04.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:04.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:04.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:04.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:04.499][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 19:16:04.500][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-06-11 19:16:04.533][biodb::testThat]
biodb.INFO [2025-06-11 19:16:04.534][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-06-11 19:16:04.536][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:04.537][biodb::testThat]
biodb.TRACE[2025-06-11 19:16:04.567][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 19:16:04.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 19:16:04.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.573][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 19:16:04.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 19:16:04.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.577][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-11 19:16:04.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-11 19:16:04.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.596][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-11 19:16:04.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-11 19:16:04.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.658][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 19:16:04.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 19:16:04.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.664][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 19:16:04.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 19:16:04.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-11 19:16:04.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-11 19:16:04.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:04.674][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-11 19:16:04.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-11 19:16:04.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:04.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-11 19:16:04.692][biodb::testThat]
biodb.INFO [2025-06-11 19:16:04.694][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-06-11 19:16:04.695][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:04.697][biodb::testThat]
biodb.INFO [2025-06-11 19:16:04.716][biodb::testThat]
biodb.INFO [2025-06-11 19:16:04.718][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-06-11 19:16:04.719][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:04.719][biodb::testThat]
biodb.INFO [2025-06-11 19:16:04.732][biodb::testThat]
biodb.INFO [2025-06-11 19:16:04.733][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-06-11 19:16:04.735][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:04.736][biodb::testThat]
biodb.DEBUG[2025-06-11 19:16:04.742][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-06-11 19:16:23.488][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-06-11 19:16:23.558][biodb::testThat]
biodb.INFO [2025-06-11 19:16:23.559][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-06-11 19:16:23.560][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:23.562][biodb::testThat]
biodb.DEBUG[2025-06-11 19:16:30.077][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-06-11 19:16:30.121][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:30.126][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:30.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.133][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.135][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:30.136][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:30.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.144][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.145][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:30.147][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:30.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.150][ef$get] fields variable is a list.
biodb.INFO [2025-06-11 19:16:30.151][biodb::testThat]
biodb.INFO [2025-06-11 19:16:30.153][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-06-11 19:16:30.154][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:30.155][biodb::testThat]
biodb.DEBUG[2025-06-11 19:16:30.156][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-06-11 19:16:30.213][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 19:16:30.232][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:30.236][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 19:16:30.266][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-06-11 19:16:30.268][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-06-11 19:16:30.270][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-06-11 19:16:30.272][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 19:16:30.274][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:30.276][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 19:16:30.278][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 19:16:30.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:30.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:30.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:30.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:30.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:30.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 19:16:30.317][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:30.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:30.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.323][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:30.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:30.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:30.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:30.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:30.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:30.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:30.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:30.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:30.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:30.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:30.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:30.361][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-06-11 19:16:30.362][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-06-11 19:16:30.410][biodb::testThat]
biodb.INFO [2025-06-11 19:16:30.412][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-06-11 19:16:30.414][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:30.415][biodb::testThat]
biodb.DEBUG[2025-06-11 19:16:30.426][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-06-11 19:16:30.428][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-06-11 19:16:30.429][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 19:16:30.432][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:30.434][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 19:16:30.436][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-06-11 19:16:30.438][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-06-11 19:16:30.440][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-06-11 19:16:30.441][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 19:16:30.443][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:30.445][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 19:16:30.447][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 19:16:30.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:30.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:30.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:30.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:30.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:30.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 19:16:30.498][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:30.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.504][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:30.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:30.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:30.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:30.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:30.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:30.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:30.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:30.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:30.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:30.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:30.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:30.559][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-06-11 19:16:30.560][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-06-11 19:16:30.561][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-06-11 19:16:30.587][biodb::testThat]
biodb.INFO [2025-06-11 19:16:30.588][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-06-11 19:16:30.590][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:30.591][biodb::testThat]
biodb.INFO [2025-06-11 19:16:30.626][biodb::testThat]
biodb.INFO [2025-06-11 19:16:30.628][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-06-11 19:16:30.629][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:30.630][biodb::testThat]
biodb.DEBUG[2025-06-11 19:16:30.633][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:30.635][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:30.637][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 19:16:30.639][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:30.640][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 19:16:30.642][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 19:16:30.643][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 19:16:30.645][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 19:16:30.646][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-06-11 19:16:30.661][biodb::testThat]
biodb.INFO [2025-06-11 19:16:30.663][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-06-11 19:16:30.664][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:30.668][biodb::testThat]
biodb.DEBUG[2025-06-11 19:16:30.675][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:30.677][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:30.679][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 19:16:30.681][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:30.683][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 19:16:30.692][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 19:16:30.700][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 19:16:30.702][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 19:16:30.703][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-06-11 19:16:30.721][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:30.723][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:30.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.726][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.727][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:30.729][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:30.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.731][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:30.732][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:30.734][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:30.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:30.736][ef$get] fields variable is a list.
biodb.INFO [2025-06-11 19:16:30.738][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-06-11 19:16:30.739][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-06-11 19:16:30.749][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-06-11 19:16:30.751][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-06-11 19:16:30.752][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:30.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:30.754][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:30.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:30.757][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-06-11 19:16:30.769][biodb::testContext]
biodb.INFO [2025-06-11 19:16:30.770][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 19:16:30.772][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-06-11 19:16:30.777][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 19:16:30.778][biodb::testContext]
biodb.INFO [2025-06-11 19:16:30.785][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.0.
biodb.DEBUG[2025-06-11 19:16:30.787][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-06-11 19:16:30.792][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 19:16:30.794][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-06-11 19:16:30.796][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-06-11 19:16:30.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.801][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-06-11 19:16:30.802][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-06-11 19:16:30.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.807][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-06-11 19:16:30.809][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-06-11 19:16:30.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.814][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-06-11 19:16:30.815][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-06-11 19:16:30.816][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-06-11 19:16:30.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.821][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-06-11 19:16:30.823][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-06-11 19:16:30.824][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-06-11 19:16:30.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.829][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-06-11 19:16:30.830][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-06-11 19:16:30.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.840][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-06-11 19:16:30.842][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-06-11 19:16:30.843][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-06-11 19:16:30.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.847][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-06-11 19:16:30.854][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-06-11 19:16:30.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.859][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-06-11 19:16:30.861][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-06-11 19:16:30.862][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-06-11 19:16:30.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.868][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-06-11 19:16:30.869][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-06-11 19:16:30.871][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-06-11 19:16:30.872][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-06-11 19:16:30.874][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-06-11 19:16:30.876][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-06-11 19:16:30.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.888][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-06-11 19:16:30.892][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-06-11 19:16:30.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.899][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-06-11 19:16:30.900][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-06-11 19:16:30.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.905][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-06-11 19:16:30.907][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-06-11 19:16:30.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.911][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-06-11 19:16:30.912][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-06-11 19:16:30.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.917][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-06-11 19:16:30.919][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-06-11 19:16:30.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.923][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-06-11 19:16:30.925][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-06-11 19:16:30.955][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-06-11 19:16:30.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.962][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-06-11 19:16:30.963][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-06-11 19:16:30.965][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-06-11 19:16:30.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:30.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:30.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:30.969][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-06-11 19:16:30.972][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:30.974][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-06-11 19:16:30.978][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:30.979][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:30.981][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:30.982][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 19:16:30.983][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:30.984][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:30.985][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 19:16:30.987][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:30.988][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:30.989][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-06-11 19:16:30.991][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:30.992][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:30.993][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:30.995][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 19:16:30.995][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 19:16:30.995][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 19:16:30.995][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 19:16:30.995][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 19:16:30.996][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 19:16:30.997][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:30.998][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:30.999][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:31.001][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:31.002][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:31.003][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.004][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.005][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:31.006][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:31.007][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.008][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.014][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-06-11 19:16:31.016][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.017][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 19:16:31.018][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.020][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:31.021][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.022][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.023][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.024][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.025][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 19:16:31.027][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:31.028][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.030][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-06-11 19:16:31.031][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:31.032][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.034][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.035][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 19:16:31.035][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 19:16:31.035][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 19:16:31.035][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 19:16:31.035][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 19:16:31.036][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 19:16:31.038][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:31.039][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:31.040][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:31.042][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:31.043][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:31.044][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.046][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.047][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:31.048][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:31.049][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.051][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.052][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-06-11 19:16:31.054][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.055][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-06-11 19:16:31.056][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.057][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:31.058][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.059][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.060][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.062][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.063][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 19:16:31.064][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:31.071][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.072][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-06-11 19:16:31.074][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:31.087][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.088][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.089][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.091][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 19:16:31.093][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:31.094][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:31.095][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:31.096][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:31.098][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:31.099][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.101][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.102][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:31.103][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:31.105][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.106][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.107][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-06-11 19:16:31.110][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.111][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 19:16:31.113][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.114][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:31.115][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.117][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.118][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.120][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.121][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 19:16:31.122][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:31.124][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.125][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-06-11 19:16:31.126][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:31.127][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.128][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.129][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.130][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 19:16:31.131][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:31.132][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:31.134][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:31.135][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:31.136][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:31.137][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.139][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.140][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:31.141][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:31.142][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.143][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.145][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 19:16:31.146][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.291][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-06-11 19:16:31.293][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-06-11 19:16:31.294][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-06-11 19:16:31.296][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-06-11 19:16:31.298][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-11 19:16:31.300][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 19:16:31.302][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-06-11 19:16:31.304][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-06-11 19:16:31.328][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-06-11 19:16:31.329][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 19:16:31.331][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 19:16:31.333][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-06-11 19:16:31.335][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-06-11 19:16:31.337][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-06-11 19:16:31.339][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-06-11 19:16:31.341][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 19:16:31.343][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-06-11 19:16:31.345][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-06-11 19:16:31.347][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-11 19:16:31.349][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-06-11 19:16:31.351][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-06-11 19:16:31.352][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-06-11 19:16:31.355][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-06-11 19:16:31.357][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-06-11 19:16:31.359][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-06-11 19:16:31.361][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-06-11 19:16:31.363][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-06-11 19:16:31.364][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-06-11 19:16:31.366][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-06-11 19:16:31.369][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-06-11 19:16:31.371][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-06-11 19:16:31.373][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-06-11 19:16:31.375][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-06-11 19:16:31.377][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-06-11 19:16:31.379][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-06-11 19:16:31.381][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-06-11 19:16:31.383][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-06-11 19:16:31.385][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-06-11 19:16:31.387][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-06-11 19:16:31.410][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-06-11 19:16:31.413][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-06-11 19:16:31.415][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-06-11 19:16:31.417][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-06-11 19:16:31.418][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-06-11 19:16:31.421][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-06-11 19:16:31.423][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-06-11 19:16:31.425][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-06-11 19:16:31.426][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-06-11 19:16:31.428][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-06-11 19:16:31.430][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-06-11 19:16:31.433][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-06-11 19:16:31.435][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-06-11 19:16:31.437][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-06-11 19:16:31.439][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-06-11 19:16:31.441][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-06-11 19:16:31.443][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-06-11 19:16:31.445][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-06-11 19:16:31.446][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-06-11 19:16:31.448][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-06-11 19:16:31.449][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-06-11 19:16:31.458][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-06-11 19:16:31.461][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-06-11 19:16:31.463][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-06-11 19:16:31.465][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-06-11 19:16:31.467][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-06-11 19:16:31.470][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-06-11 19:16:31.484][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-11 19:16:31.486][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-11 19:16:31.488][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-06-11 19:16:31.490][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-06-11 19:16:31.491][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-06-11 19:16:31.494][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-06-11 19:16:31.496][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-06-11 19:16:31.498][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-06-11 19:16:31.500][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-06-11 19:16:31.502][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-06-11 19:16:31.504][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-06-11 19:16:31.506][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-06-11 19:16:31.509][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-06-11 19:16:31.511][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-06-11 19:16:31.514][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-06-11 19:16:31.520][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-06-11 19:16:31.522][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-06-11 19:16:31.524][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-06-11 19:16:31.527][initialize] This is biodb version 1.17.0.
biodb.DEBUG[2025-06-11 19:16:31.528][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 19:16:31.530][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.532][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:31.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:31.705][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-06-11 19:16:31.707][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 19:16:31.710][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.712][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.720][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.721][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:31.723][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.724][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-06-11 19:16:31.725][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.726][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.727][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-06-11 19:16:31.728][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:31.730][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.731][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-06-11 19:16:31.733][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-06-11 19:16:31.734][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-06-11 19:16:31.736][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:31.737][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 19:16:31.737][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-06-11 19:16:31.737][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-06-11 19:16:31.738][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-06-11 19:16:31.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:31.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:31.741][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:31.742][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:31.743][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:31.744][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:31.745][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 19:16:31.745][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-06-11 19:16:31.747][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:31.748][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:31.750][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:31.751][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:31.753][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-06-11 19:16:31.755][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 19:16:31.757][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 19:16:31.759][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 19:16:31.761][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 19:16:31.765][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 19:16:31.766][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-06-11 19:16:31.768][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 19:16:31.769][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 19:16:31.771][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:31.772][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:31.774][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-06-11 19:16:31.775][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-06-11 19:16:31.776][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 19:16:31.776][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-06-11 19:16:31.778][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:31.779][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:31.797][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-06-11 19:16:31.799][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-06-11 19:16:31.800][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 19:16:31.802][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 19:16:31.804][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:31.804][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:31.806][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 19:16:31.807][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:31.808][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-06-11 19:16:31.809][biodb::testThat]
biodb.INFO [2025-06-11 19:16:31.817][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-06-11 19:16:31.819][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:31.820][biodb::testThat]
biodb.DEBUG[2025-06-11 19:16:31.823][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:31.825][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:31.826][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 19:16:31.827][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:31.828][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 19:16:31.829][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 19:16:31.830][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 19:16:31.831][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 19:16:31.831][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 19:16:31.834][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-06-11 19:16:31.841][biodb::testThat]
biodb.INFO [2025-06-11 19:16:31.842][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-06-11 19:16:31.844][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:31.845][biodb::testThat]
biodb.DEBUG[2025-06-11 19:16:31.847][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-06-11 19:16:31.848][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 19:16:31.849][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:31.851][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 19:16:31.854][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-06-11 19:16:31.855][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-06-11 19:16:31.857][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-06-11 19:16:31.858][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 19:16:31.860][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 19:16:31.861][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 19:16:31.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:31.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:31.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:31.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:31.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:31.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:31.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 19:16:31.884][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:31.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:31.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.894][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:31.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:31.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.903][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:31.905][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:31.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.907][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.908][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:31.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:31.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.913][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:31.914][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:31.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.916][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.917][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:31.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:31.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.923][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:31.924][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:31.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.927][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.928][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:31.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:31.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:31.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:31.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.937][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:31.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.944][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:31.946][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:31.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.948][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:31.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:31.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.955][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:31.956][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:31.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.979][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.981][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:31.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:31.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:31.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:31.996][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:31.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:31.998][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:32.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:32.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.005][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:32.006][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:32.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.009][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:32.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:32.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.015][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:32.016][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:32.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.019][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:32.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:32.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.031][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:32.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:32.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.038][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:32.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:32.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:32.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.048][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:32.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.063][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:32.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:32.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.074][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:32.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:32.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.081][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:32.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:32.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.084][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:32.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:32.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.090][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:32.092][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:32.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.094][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:32.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:32.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.102][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:32.103][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:32.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.105][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:32.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:32.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.111][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 19:16:32.113][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:32.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.115][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.117][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 19:16:32.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:32.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:32.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:32.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:32.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:32.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.169][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:32.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.174][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:32.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.179][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:32.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.183][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:32.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:32.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:32.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:32.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:32.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:32.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:32.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:32.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:32.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:32.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:32.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:32.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:32.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:32.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:32.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:32.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:32.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:32.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:32.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:32.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:32.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:32.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:32.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:32.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:32.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:32.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.282][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:32.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:32.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.287][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:32.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:32.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.292][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:32.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.297][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:32.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:32.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:32.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:32.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:32.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:32.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:32.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:32.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.366][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:32.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:32.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.371][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:32.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:32.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:32.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:32.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:32.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:32.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:32.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:32.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:32.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:32.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:32.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:32.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:32.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:32.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:32.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:32.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:32.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.446][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:32.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:32.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.450][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:32.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:32.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.455][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:32.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:32.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:32.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:32.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:32.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:32.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:32.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 19:16:32.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.520][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 19:16:32.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:32.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:32.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:32.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:32.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:32.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:32.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:32.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:32.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:32.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:32.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:32.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.549][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:32.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:32.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.554][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:32.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:32.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.564][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:32.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:32.616][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-06-11 19:16:32.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:32.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:32.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:32.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:32.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-11 19:16:32.643][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-06-11 19:16:32.645][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-06-11 19:16:32.647][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-06-11 19:16:32.648][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-06-11 19:16:32.649][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:32.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:32.652][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:32.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:32.655][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-06-11 19:16:32.666][biodb::testContext]
biodb.INFO [2025-06-11 19:16:32.667][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 19:16:32.668][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-06-11 19:16:32.669][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 19:16:32.670][biodb::testContext]
biodb.INFO [2025-06-11 19:16:32.683][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.0.
biodb.DEBUG[2025-06-11 19:16:32.685][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-06-11 19:16:32.691][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 19:16:32.699][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-06-11 19:16:32.701][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-06-11 19:16:32.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.708][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-06-11 19:16:32.709][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-06-11 19:16:32.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.713][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-06-11 19:16:32.715][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-06-11 19:16:32.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.721][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-06-11 19:16:32.724][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-06-11 19:16:32.728][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-06-11 19:16:32.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.733][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-06-11 19:16:32.735][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-06-11 19:16:32.736][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-06-11 19:16:32.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.740][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-06-11 19:16:32.742][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-06-11 19:16:32.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.746][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-06-11 19:16:32.748][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-06-11 19:16:32.750][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-06-11 19:16:32.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.755][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-06-11 19:16:32.756][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-06-11 19:16:32.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.762][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-06-11 19:16:32.763][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-06-11 19:16:32.764][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-06-11 19:16:32.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.770][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-06-11 19:16:32.771][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-06-11 19:16:32.773][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-06-11 19:16:32.774][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-06-11 19:16:32.775][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-06-11 19:16:32.776][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-06-11 19:16:32.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.781][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-06-11 19:16:32.782][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-06-11 19:16:32.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.794][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-06-11 19:16:32.796][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-06-11 19:16:32.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.802][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-06-11 19:16:32.803][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-06-11 19:16:32.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.808][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-06-11 19:16:32.809][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-06-11 19:16:32.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.815][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-06-11 19:16:32.816][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-06-11 19:16:32.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.821][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-06-11 19:16:32.822][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-06-11 19:16:32.845][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-06-11 19:16:32.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.852][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-06-11 19:16:32.853][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-06-11 19:16:32.854][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-06-11 19:16:32.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:32.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:32.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:32.859][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-06-11 19:16:32.861][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:32.863][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-06-11 19:16:32.864][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:32.865][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:32.866][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:32.868][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 19:16:32.876][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:32.887][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:32.889][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 19:16:32.891][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:32.893][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:32.894][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-06-11 19:16:32.896][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:32.897][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:32.899][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:32.900][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 19:16:32.900][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 19:16:32.900][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 19:16:32.900][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 19:16:32.900][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 19:16:32.902][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 19:16:32.903][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:32.904][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:32.906][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:32.908][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:32.911][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:32.916][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:32.918][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:32.919][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:32.921][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:32.922][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:32.923][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:32.925][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-06-11 19:16:32.927][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:32.929][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 19:16:32.930][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:32.931][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:32.933][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:32.934][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 19:16:32.935][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:32.937][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:32.938][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 19:16:32.940][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:32.941][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:32.942][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-06-11 19:16:32.943][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:32.945][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:32.946][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:32.947][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 19:16:32.947][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 19:16:32.947][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 19:16:32.947][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 19:16:32.947][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 19:16:32.948][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 19:16:32.950][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:32.951][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:32.952][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:32.954][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:32.955][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:32.957][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:32.958][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:32.959][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:32.960][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:32.962][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:32.963][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:32.965][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-06-11 19:16:32.967][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:32.968][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-06-11 19:16:32.969][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:32.971][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:32.972][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:32.981][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 19:16:32.983][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:32.985][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:32.987][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 19:16:32.988][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:32.990][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:32.991][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-06-11 19:16:32.993][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:32.995][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:32.996][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:32.997][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:32.999][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 19:16:33.000][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:33.002][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:33.003][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:33.004][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:33.005][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:33.007][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:33.008][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:33.009][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:33.011][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:33.012][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:33.013][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:33.015][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-06-11 19:16:33.018][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:33.019][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 19:16:33.022][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:33.028][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:33.030][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:33.031][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 19:16:33.033][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:33.035][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:33.036][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 19:16:33.038][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:33.039][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:33.041][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-06-11 19:16:33.042][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:33.044][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:33.045][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:33.047][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:33.048][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 19:16:33.049][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:33.050][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:33.052][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:33.053][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:33.054][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:33.063][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:33.064][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:33.077][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:33.078][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:33.080][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:33.082][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:33.084][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 19:16:33.085][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.215][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-06-11 19:16:33.220][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-06-11 19:16:33.224][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-06-11 19:16:33.226][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-06-11 19:16:33.228][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-11 19:16:33.230][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 19:16:33.232][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-06-11 19:16:33.233][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-06-11 19:16:33.235][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-06-11 19:16:33.238][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 19:16:33.240][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 19:16:33.242][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-06-11 19:16:33.250][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-06-11 19:16:33.253][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-06-11 19:16:33.255][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-06-11 19:16:33.257][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 19:16:33.258][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-06-11 19:16:33.260][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-06-11 19:16:33.262][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-11 19:16:33.263][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-06-11 19:16:33.266][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-06-11 19:16:33.267][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-06-11 19:16:33.269][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-06-11 19:16:33.271][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-06-11 19:16:33.273][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-06-11 19:16:33.283][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-06-11 19:16:33.285][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-06-11 19:16:33.286][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-06-11 19:16:33.288][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-06-11 19:16:33.289][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-06-11 19:16:33.291][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-06-11 19:16:33.293][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-06-11 19:16:33.295][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-06-11 19:16:33.297][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-06-11 19:16:33.299][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-06-11 19:16:33.301][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-06-11 19:16:33.303][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-06-11 19:16:33.305][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-06-11 19:16:33.307][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-06-11 19:16:33.309][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-06-11 19:16:33.311][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-06-11 19:16:33.314][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-06-11 19:16:33.317][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-06-11 19:16:33.318][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-06-11 19:16:33.321][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-06-11 19:16:33.322][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-06-11 19:16:33.324][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-06-11 19:16:33.326][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-06-11 19:16:33.328][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-06-11 19:16:33.330][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-06-11 19:16:33.331][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-06-11 19:16:33.333][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-06-11 19:16:33.335][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-06-11 19:16:33.336][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-06-11 19:16:33.338][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-06-11 19:16:33.339][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-06-11 19:16:33.341][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-06-11 19:16:33.343][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-06-11 19:16:33.345][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-06-11 19:16:33.347][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-06-11 19:16:33.349][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-06-11 19:16:33.351][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-06-11 19:16:33.353][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-06-11 19:16:33.354][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-06-11 19:16:33.356][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-06-11 19:16:33.358][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-06-11 19:16:33.359][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-11 19:16:33.361][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-11 19:16:33.363][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-06-11 19:16:33.365][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-06-11 19:16:33.367][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-06-11 19:16:33.369][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-06-11 19:16:33.371][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-06-11 19:16:33.372][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-06-11 19:16:33.374][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-06-11 19:16:33.376][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-06-11 19:16:33.377][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-06-11 19:16:33.379][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-06-11 19:16:33.381][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-06-11 19:16:33.383][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-06-11 19:16:33.384][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-06-11 19:16:33.386][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-06-11 19:16:33.388][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-06-11 19:16:33.397][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-06-11 19:16:33.399][initialize] This is biodb version 1.17.0.
biodb.DEBUG[2025-06-11 19:16:33.401][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 19:16:33.408][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.412][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 19:16:33.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:33.579][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-06-11 19:16:33.580][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 19:16:33.582][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:33.583][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-06-11 19:16:33.585][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:33.586][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 19:16:33.587][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:33.589][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-06-11 19:16:33.590][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:33.591][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 19:16:33.593][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-06-11 19:16:33.594][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 19:16:33.595][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:33.597][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-06-11 19:16:33.598][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-06-11 19:16:33.599][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-06-11 19:16:33.601][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-06-11 19:16:33.602][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 19:16:33.602][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-06-11 19:16:33.602][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-06-11 19:16:33.604][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-06-11 19:16:33.605][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:33.606][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:33.608][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 19:16:33.609][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 19:16:33.610][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 19:16:33.612][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 19:16:33.613][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 19:16:33.613][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-06-11 19:16:33.615][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:33.616][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:33.617][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-06-11 19:16:33.619][self$setPropertyValue]
biodb.DEBUG[2025-06-11 19:16:33.620][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-06-11 19:16:33.622][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 19:16:33.624][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 19:16:33.627][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 19:16:33.628][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 19:16:33.632][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 19:16:33.633][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-06-11 19:16:33.635][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 19:16:33.637][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 19:16:33.639][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:33.648][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:33.651][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-06-11 19:16:33.652][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-06-11 19:16:33.653][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 19:16:33.653][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-06-11 19:16:33.654][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 19:16:33.656][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 19:16:33.657][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-06-11 19:16:33.658][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-06-11 19:16:33.660][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 19:16:33.661][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 19:16:33.663][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:33.664][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:33.666][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 19:16:33.667][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 19:16:33.668][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-06-11 19:16:33.670][biodb::testThat]
biodb.INFO [2025-06-11 19:16:33.671][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-06-11 19:16:33.672][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 19:16:33.673][biodb::testThat]
biodb.DEBUG[2025-06-11 19:16:33.676][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-06-11 19:16:33.677][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-06-11 19:16:33.678][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-06-11 19:16:33.682][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:33.683][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:33.684][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 19:16:33.686][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:33.687][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 19:16:33.688][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 19:16:33.690][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 19:16:33.691][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 19:16:33.692][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 19:16:33.693][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 19:16:33.694][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-06-11 19:16:33.697][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-06-11 19:16:33.698][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 19:16:33.700][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:33.708][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 19:16:33.712][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-06-11 19:16:33.715][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-06-11 19:16:33.718][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-06-11 19:16:33.720][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 19:16:33.722][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 19:16:33.724][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 19:16:33.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:33.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:33.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:33.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:33.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:33.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:33.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 19:16:33.742][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:33.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:33.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.746][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:33.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:33.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.761][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:33.762][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:33.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.765][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.767][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:33.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:33.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.773][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:33.775][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:33.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.778][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.779][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:33.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:33.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.784][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:33.786][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:33.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.789][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.791][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:33.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:33.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:33.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:33.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.802][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:33.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:33.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.810][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:33.811][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:33.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.813][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:33.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:33.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:33.823][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:33.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.825][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.827][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:33.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:33.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:33.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:33.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.836][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:33.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:33.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.844][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:33.846][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:33.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.847][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:33.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:33.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.853][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:33.855][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:33.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.857][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:33.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:33.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.863][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:33.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:33.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.873][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.883][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:33.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.890][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:33.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:33.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.895][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:33.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:33.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:33.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:33.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.913][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:33.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:33.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:33.921][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:33.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.923][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:33.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:33.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.930][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:33.931][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:33.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.934][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:33.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:33.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.941][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:33.942][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:33.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.945][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.952][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:33.953][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:33.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.955][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:33.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:33.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.962][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 19:16:33.964][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:33.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.966][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.968][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 19:16:33.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:33.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:33.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:33.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:33.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:33.995][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:33.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.000][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:34.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:34.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.013][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.019][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.024][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:34.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.118][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:34.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:34.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.123][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:34.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:34.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:34.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:34.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:34.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:34.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:34.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:34.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:34.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:34.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:34.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:34.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:34.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:34.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.193][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.204][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:34.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:34.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:34.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:34.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:34.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:34.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:34.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:34.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:34.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:34.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:34.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.263][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:34.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:34.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.270][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:34.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:34.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.276][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:34.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:34.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:34.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:34.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:34.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.305][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 19:16:34.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.324][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 19:16:34.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:34.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:34.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:34.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:34.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:34.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:34.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:34.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:34.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:34.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:34.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.362][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:34.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:34.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.368][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:34.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:34.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:34.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:34.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.388][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:34.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:34.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:34.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:34.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:34.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:34.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:34.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:34.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:34.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:34.429][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-06-11 19:16:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:34.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:34.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.436][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:34.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:34.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.441][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:34.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:34.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.446][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:34.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:34.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:34.450][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 19:16:34.451][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 19:16:34.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:34.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:34.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:34.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:34.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:34.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:34.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:34.468][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-06-11 19:16:34.470][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 19:16:34.472][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:34.473][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 19:16:34.476][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-06-11 19:16:34.477][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-06-11 19:16:34.479][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-06-11 19:16:34.481][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 19:16:34.490][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 19:16:34.492][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 19:16:34.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:34.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:34.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:34.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:34.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:34.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:34.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 19:16:34.513][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:34.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:34.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.525][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:34.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.536][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:34.537][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:34.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.539][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.541][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:34.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:34.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.546][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:34.547][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:34.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.550][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.551][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:34.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:34.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.556][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.557][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.559][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.560][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.570][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.576][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.577][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.580][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.586][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.587][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.589][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.591][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.596][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:34.597][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:34.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.600][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:34.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:34.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.614][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.616][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.619][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.625][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.626][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.628][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.636][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:34.637][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:34.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.639][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.641][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:34.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:34.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.646][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:34.647][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:34.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.652][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:34.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:34.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.666][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.673][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.684][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.692][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:34.693][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:34.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.695][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:34.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:34.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.702][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:34.704][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:34.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.706][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.707][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:34.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:34.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.712][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:34.714][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:34.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.716][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:34.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:34.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.723][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 19:16:34.724][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.727][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.728][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 19:16:34.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:34.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:34.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:34.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:34.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:34.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:34.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.759][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:34.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:34.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.767][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:34.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.773][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 19:16:34.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 19:16:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.784][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.789][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 19:16:34.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 19:16:34.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 19:16:34.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 19:16:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 19:16:34.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 19:16:34.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.881][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:34.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:34.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.886][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:34.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:34.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.891][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:34.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:34.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:34.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:34.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:34.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:34.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 19:16:34.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 19:16:34.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:34.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:34.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:34.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:34.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 19:16:34.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 19:16:34.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:34.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.949][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.953][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 19:16:34.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 19:16:34.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:34.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:34.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:34.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:34.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:35.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:35.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:35.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:35.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:35.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:35.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:35.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:35.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 19:16:35.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.024][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.029][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:35.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:35.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.035][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:35.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 19:16:35.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.044][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:35.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:35.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:35.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 19:16:35.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 19:16:35.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.059][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 19:16:35.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:35.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:35.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:35.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:35.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:35.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 19:16:35.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:35.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.080][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 19:16:35.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 19:16:35.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:35.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:35.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:35.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:35.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:35.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:35.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:35.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:35.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 19:16:35.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 19:16:35.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.111][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:35.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:35.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.116][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:35.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:35.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:35.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:35.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.125][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:35.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 19:16:35.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:35.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:35.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:35.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:35.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:35.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:35.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:35.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:35.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:35.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 19:16:35.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 19:16:35.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:35.174][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-06-11 19:16:35.176][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.180][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.185][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.191][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:35.195][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 19:16:35.196][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-06-11 19:16:35.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:35.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:35.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:35.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:35.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:35.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:35.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:35.224][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-06-11 19:16:35.226][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-06-11 19:16:35.227][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-06-11 19:16:35.230][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:35.231][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:35.233][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 19:16:35.234][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:35.236][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 19:16:35.238][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 19:16:35.240][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 19:16:35.240][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 19:16:35.241][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 19:16:35.243][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 19:16:35.244][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 19:16:35.247][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.252][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.258][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.274][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.279][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.290][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:35.294][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 19:16:35.295][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 19:16:35.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:35.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:35.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:35.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:35.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:35.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:35.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 19:16:35.325][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.336][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.346][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.356][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:35.361][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-06-11 19:16:35.363][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 19:16:35.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:35.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:35.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:35.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:35.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:35.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:35.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 19:16:35.385][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-06-11 19:16:35.395][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-06-11 19:16:35.397][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-06-11 19:16:35.399][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:35.401][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:35.403][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 19:16:35.405][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 19:16:35.406][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 19:16:35.410][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 19:16:35.411][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 19:16:35.414][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 19:16:35.417][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 19:16:35.419][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 19:16:35.420][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 19:16:35.423][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.428][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.434][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.439][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.444][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.449][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.454][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:35.459][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-06-11 19:16:35.461][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-06-11 19:16:35.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:35.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:35.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:35.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:35.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:35.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:35.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 19:16:35.476][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.488][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.493][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.499][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.504][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.517][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 19:16:35.523][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 19:16:35.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 19:16:35.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 19:16:35.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 19:16:35.530][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 19:16:35.533][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 19:16:35.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 19:16:35.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:35.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:35.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:35.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:35.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:35.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-06-11 19:16:35.564][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-06-11 19:16:35.566][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-06-11 19:16:35.567][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-06-11 19:16:35.568][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-06-11 19:16:35.570][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 19:16:35.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 19:16:35.572][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 19:16:35.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 19:16:35.575][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 19:16:35.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
 10.845   0.782  37.837

Example timings