Multiple platform build/check report for BioC 3.22 - CHECK results for biodbHmdb on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4795
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"	4536
lconway	macOS 12.7.1 Monterey	x86_64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4574
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4513
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4480
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on kjohnson3

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.15.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.15.0.tar.gz

StartedAt: 2025-06-11 18:14:38 -0400 (Wed, 11 Jun 2025)

EndedAt: 2025-06-11 18:15:09 -0400 (Wed, 11 Jun 2025)

EllapsedTime: 31.5 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.15.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.5.0 Patched (2025-04-21 r88169)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.22-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.15.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-06-11 18:14:52.520][biodb::testContext]
biodb.INFO [2025-06-11 18:14:52.521][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 18:14:52.522][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-06-11 18:14:52.522][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 18:14:52.522][biodb::testContext]
biodb.INFO [2025-06-11 18:14:52.523][biodb::testThat]
biodb.INFO [2025-06-11 18:14:52.523][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-06-11 18:14:52.523][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:14:52.523][biodb::testThat]
biodb.INFO [2025-06-11 18:14:52.561][biodb::testContext]
biodb.INFO [2025-06-11 18:14:52.562][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 18:14:52.562][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-06-11 18:14:52.562][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 18:14:52.563][biodb::testContext]
biodb.INFO [2025-06-11 18:14:52.566][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.0.
biodb.DEBUG[2025-06-11 18:14:52.567][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-06-11 18:14:52.571][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 18:14:52.571][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-06-11 18:14:52.571][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-06-11 18:14:52.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.573][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-06-11 18:14:52.583][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-06-11 18:14:52.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.584][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-06-11 18:14:52.585][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-06-11 18:14:52.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.586][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-06-11 18:14:52.586][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-06-11 18:14:52.586][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-06-11 18:14:52.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.587][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-06-11 18:14:52.587][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-06-11 18:14:52.588][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-06-11 18:14:52.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.589][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-06-11 18:14:52.589][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-06-11 18:14:52.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.590][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-06-11 18:14:52.590][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-06-11 18:14:52.590][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-06-11 18:14:52.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.591][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-06-11 18:14:52.592][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-06-11 18:14:52.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.592][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-06-11 18:14:52.593][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-06-11 18:14:52.593][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-06-11 18:14:52.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.594][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-06-11 18:14:52.594][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-06-11 18:14:52.594][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-06-11 18:14:52.595][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-06-11 18:14:52.595][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-06-11 18:14:52.595][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-06-11 18:14:52.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.596][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-06-11 18:14:52.596][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-06-11 18:14:52.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.597][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-06-11 18:14:52.598][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-06-11 18:14:52.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.599][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-06-11 18:14:52.599][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-06-11 18:14:52.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.600][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-06-11 18:14:52.600][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-06-11 18:14:52.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.601][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-06-11 18:14:52.601][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-06-11 18:14:52.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.602][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-06-11 18:14:52.603][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-06-11 18:14:52.609][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-06-11 18:14:52.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.611][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-06-11 18:14:52.611][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-06-11 18:14:52.611][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-06-11 18:14:52.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.613][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-06-11 18:14:52.624][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.629][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-06-11 18:14:52.630][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.630][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:14:52.630][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.630][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.631][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.631][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.631][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 18:14:52.632][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:14:52.632][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.632][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-06-11 18:14:52.632][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:14:52.633][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.633][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.633][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 18:14:52.633][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 18:14:52.633][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 18:14:52.633][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 18:14:52.633][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 18:14:52.633][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 18:14:52.634][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:14:52.634][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:14:52.634][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:14:52.634][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:14:52.635][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:14:52.635][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.635][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.635][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:14:52.636][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:14:52.636][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.636][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.636][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-06-11 18:14:52.637][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.640][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 18:14:52.640][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.640][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:14:52.640][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.641][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.641][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.641][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.641][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 18:14:52.642][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:14:52.642][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.642][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-06-11 18:14:52.642][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:14:52.643][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.643][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.643][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 18:14:52.643][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 18:14:52.643][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 18:14:52.643][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 18:14:52.643][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 18:14:52.643][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 18:14:52.644][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:14:52.644][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:14:52.644][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:14:52.645][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:14:52.645][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:14:52.645][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.645][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.645][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:14:52.646][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:14:52.646][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.646][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.647][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-06-11 18:14:52.647][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.647][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-06-11 18:14:52.648][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.648][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:14:52.648][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.648][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.649][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.649][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.649][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 18:14:52.649][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:14:52.650][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.650][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-06-11 18:14:52.650][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:14:52.650][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.651][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.651][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.651][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 18:14:52.651][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:14:52.652][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:14:52.652][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:14:52.652][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:14:52.652][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:14:52.653][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.653][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.653][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:14:52.653][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:14:52.654][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.654][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.654][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-06-11 18:14:52.655][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.655][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 18:14:52.655][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.655][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:14:52.656][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.656][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.656][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.656][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.657][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 18:14:52.657][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:14:52.657][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.657][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-06-11 18:14:52.658][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:14:52.658][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.658][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.658][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.659][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 18:14:52.659][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:14:52.659][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:14:52.659][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:14:52.660][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:14:52.660][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:14:52.660][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.660][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.661][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:14:52.661][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:14:52.661][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.661][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.663][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 18:14:52.663][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.677][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.683][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-06-11 18:14:52.685][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-06-11 18:14:52.685][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-06-11 18:14:52.686][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-06-11 18:14:52.686][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-11 18:14:52.687][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 18:14:52.690][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-06-11 18:14:52.690][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-06-11 18:14:52.690][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-06-11 18:14:52.691][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 18:14:52.691][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 18:14:52.692][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-06-11 18:14:52.692][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-06-11 18:14:52.692][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-06-11 18:14:52.693][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-06-11 18:14:52.693][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 18:14:52.693][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-06-11 18:14:52.694][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-06-11 18:14:52.694][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-11 18:14:52.695][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-06-11 18:14:52.695][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-06-11 18:14:52.695][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-06-11 18:14:52.696][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-06-11 18:14:52.696][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-06-11 18:14:52.696][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-06-11 18:14:52.697][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-06-11 18:14:52.697][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-06-11 18:14:52.698][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-06-11 18:14:52.698][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-06-11 18:14:52.698][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-06-11 18:14:52.699][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-06-11 18:14:52.699][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-06-11 18:14:52.699][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-06-11 18:14:52.700][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-06-11 18:14:52.700][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-06-11 18:14:52.701][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-06-11 18:14:52.701][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-06-11 18:14:52.701][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-06-11 18:14:52.702][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-06-11 18:14:52.702][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-06-11 18:14:52.702][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-06-11 18:14:52.703][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-06-11 18:14:52.703][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-06-11 18:14:52.704][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-06-11 18:14:52.704][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-06-11 18:14:52.704][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-06-11 18:14:52.705][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-06-11 18:14:52.705][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-06-11 18:14:52.705][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-06-11 18:14:52.706][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-06-11 18:14:52.706][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-06-11 18:14:52.706][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-06-11 18:14:52.707][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-06-11 18:14:52.707][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-06-11 18:14:52.708][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-06-11 18:14:52.708][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-06-11 18:14:52.708][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-06-11 18:14:52.709][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-06-11 18:14:52.709][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-06-11 18:14:52.709][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-06-11 18:14:52.710][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-06-11 18:14:52.710][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-06-11 18:14:52.710][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-06-11 18:14:52.711][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-06-11 18:14:52.711][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-06-11 18:14:52.712][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-06-11 18:14:52.712][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-11 18:14:52.712][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-11 18:14:52.713][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-06-11 18:14:52.713][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-06-11 18:14:52.713][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-06-11 18:14:52.714][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-06-11 18:14:52.714][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-06-11 18:14:52.714][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-06-11 18:14:52.715][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-06-11 18:14:52.715][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-06-11 18:14:52.716][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-06-11 18:14:52.716][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-06-11 18:14:52.716][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-06-11 18:14:52.717][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-06-11 18:14:52.717][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-06-11 18:14:52.717][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-06-11 18:14:52.718][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-06-11 18:14:52.720][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-06-11 18:14:52.720][initialize] This is biodb version 1.17.0.
biodb.DEBUG[2025-06-11 18:14:52.722][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 18:14:52.722][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.722][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:14:52.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:14:52.767][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-06-11 18:14:52.770][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 18:14:52.771][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.771][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.771][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.772][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:14:52.772][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.772][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-06-11 18:14:52.773][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.773][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.773][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-06-11 18:14:52.773][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-06-11 18:14:52.774][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-06-11 18:14:52.775][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-06-11 18:14:52.775][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 18:14:52.775][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-06-11 18:14:52.775][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-06-11 18:14:52.775][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-06-11 18:14:52.776][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:14:52.776][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:14:52.776][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:14:52.776][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:14:52.777][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:14:52.777][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:14:52.777][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 18:14:52.777][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-06-11 18:14:52.777][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:14:52.778][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:14:52.778][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-06-11 18:14:52.778][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:14:52.780][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-06-11 18:14:52.780][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 18:14:52.781][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 18:14:52.781][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 18:14:52.782][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 18:14:52.791][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 18:14:52.792][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-06-11 18:14:52.793][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 18:14:52.795][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 18:14:52.796][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:14:52.797][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:14:52.797][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-06-11 18:14:52.797][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-06-11 18:14:52.798][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 18:14:52.798][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-06-11 18:14:52.798][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:14:52.798][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:14:52.798][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-06-11 18:14:52.799][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-06-11 18:14:52.799][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 18:14:52.804][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 18:14:52.808][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:14:52.808][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:14:52.809][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 18:14:52.809][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:14:52.809][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-06-11 18:14:52.813][biodb::testThat]
biodb.INFO [2025-06-11 18:14:52.813][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-06-11 18:14:52.813][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:14:52.814][biodb::testThat]
biodb.TRACE[2025-06-11 18:14:52.815][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-06-11 18:14:52.816][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 18:14:52.817][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 18:14:52.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:14:52.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:52.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:52.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:52.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:52.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:52.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 18:14:52.829][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.829][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.830][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.835][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:52.836][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:52.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.836][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.844][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:52.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.846][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:52.846][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:52.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.847][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.847][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:52.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:52.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.848][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:52.848][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:52.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.849][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.849][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:52.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:52.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:52.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:52.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.851][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:52.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:52.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.852][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:52.852][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:52.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.853][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:52.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:52.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.854][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:52.854][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:52.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.855][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.855][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:52.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:52.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:52.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:52.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.857][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:52.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:52.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.858][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:52.858][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:52.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.859][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:52.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.863][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:52.863][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:52.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.864][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:52.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:52.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.865][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:52.865][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:52.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.866][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:52.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:52.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.867][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:52.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:52.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.868][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:52.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:52.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.869][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.869][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.870][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.871][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:52.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:52.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.872][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:52.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:52.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.873][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:52.873][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:52.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.874][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:52.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.875][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:52.875][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:52.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.876][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.876][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:52.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:52.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.877][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:52.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:52.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.877][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:52.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.879][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 18:14:52.879][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:52.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.879][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.880][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 18:14:52.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:52.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:52.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.894][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:52.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:52.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.895][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.896][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:52.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:52.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.899][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:52.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:52.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.900][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:52.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:52.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:52.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:52.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:52.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:52.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:52.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:52.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:52.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:52.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:52.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:52.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:52.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:52.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:52.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:52.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:52.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:52.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:52.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:52.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:52.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:52.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:52.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:52.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:52.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:52.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.915][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:52.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:52.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.916][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:52.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:52.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:52.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:52.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:52.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:52.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:52.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:52.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:52.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:52.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:52.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:52.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.926][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:52.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.927][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:52.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:52.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.928][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:52.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:52.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:52.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:52.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:52.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:52.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:52.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:52.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:52.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:52.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:52.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:52.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:52.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:52.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:52.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:52.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:52.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.939][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:52.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:52.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.940][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:52.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.941][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:52.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:52.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:52.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:52.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:52.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:52.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:52.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.945][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 18:14:52.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 18:14:52.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:52.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:52.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:52.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:52.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:52.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:52.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:52.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:52.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:52.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:52.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.959][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.960][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:52.971][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-06-11 18:14:52.971][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 18:14:52.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 18:14:52.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.972][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 18:14:52.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 18:14:52.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.973][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-11 18:14:52.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-11 18:14:52.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.974][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-11 18:14:52.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-11 18:14:52.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.984][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.992][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.994][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:52.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:52.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:52.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:52.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.001][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.002][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.006][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.007][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.008][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.009][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.009][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.009][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.018][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.018][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.019][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.026][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.026][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.034][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.037][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.038][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.040][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.041][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.041][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.041][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.042][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.048][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.049][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.049][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.053][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.054][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.057][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.058][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.059][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.059][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.059][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:53.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:53.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:53.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:53.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:53.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:53.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.066][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:53.066][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:53.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.067][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:53.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:53.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.070][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.072][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.073][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.074][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.074][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.074][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.075][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.081][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.082][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.089][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.089][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.089][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.096][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.099][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.099][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.106][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.106][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.107][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:53.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:53.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:53.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:53.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:53.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.114][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:53.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:53.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.114][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:53.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:53.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:53.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:53.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:53.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:53.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:53.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:53.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:53.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:53.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.121][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:53.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:53.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.129][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.129][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.133][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.134][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.135][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.136][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.136][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.137][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.137][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.143][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.143][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.145][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.145][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.145][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.147][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.147][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.147][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.149][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.151][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.151][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.151][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.153][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.153][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.153][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.155][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.155][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.155][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.157][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.157][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.158][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.159][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.159][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.160][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.161][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:53.161][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:53.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.162][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:53.164][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:53.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.164][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.166][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.166][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.168][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.168][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.170][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.170][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.171][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.172][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.173][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.174][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.175][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.175][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.176][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.177][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.177][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.179][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:53.179][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:53.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.179][ef$get] fields variable is a list.
biodb.INFO [2025-06-11 18:14:53.182][biodb::testThat]
biodb.INFO [2025-06-11 18:14:53.185][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-06-11 18:14:53.185][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:14:53.185][biodb::testThat]
biodb.DEBUG[2025-06-11 18:14:53.189][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-06-11 18:14:53.192][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 18:14:53.194][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.195][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 18:14:53.196][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-06-11 18:14:53.196][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-06-11 18:14:53.197][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-06-11 18:14:53.197][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 18:14:53.205][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 18:14:53.205][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 18:14:53.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:14:53.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:14:53.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:14:53.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:14:53.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:14:53.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:14:53.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 18:14:53.210][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.211][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.211][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.213][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.213][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.213][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.215][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.215][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.216][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.216][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.217][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.217][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.218][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.218][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.220][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.221][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.222][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.222][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.224][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.224][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.225][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.226][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.226][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.231][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.231][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.231][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.233][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.233][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.234][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.235][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:53.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:53.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.236][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:53.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.237][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:53.237][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:53.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.238][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:53.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:53.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.240][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.241][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.242][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.242][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.244][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.244][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.246][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.246][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.247][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.247][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.248][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:53.248][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:53.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.249][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:53.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:53.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.250][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 18:14:53.250][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.251][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.251][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 18:14:53.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.257][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.258][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:14:53.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.259][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.260][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.261][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:14:53.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:14:53.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:14:53.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:14:53.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:14:53.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:14:53.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.280][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.281][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.282][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:53.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:53.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:53.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:53.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:14:53.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:14:53.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:53.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:53.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:53.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:53.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:14:53.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:14:53.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.293][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.294][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.295][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:14:53.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:14:53.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:14:53.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.305][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.308][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.309][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:53.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:53.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:53.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:53.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:14:53.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:14:53.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.313][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 18:14:53.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.317][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 18:14:53.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:14:53.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.324][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:53.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:53.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.325][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:53.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:53.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.327][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:53.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:14:53.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:14:53.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:14:53.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:53.334][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-06-11 18:14:53.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-06-11 18:14:53.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-06-11 18:14:53.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-06-11 18:14:53.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-06-11 18:14:53.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-06-11 18:14:53.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-06-11 18:14:53.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-11 18:14:53.340][biodb::testThat]
biodb.INFO [2025-06-11 18:14:53.340][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-06-11 18:14:53.341][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:14:53.341][biodb::testThat]
biodb.TRACE[2025-06-11 18:14:53.342][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.342][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.343][ef$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:53.343][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-06-11 18:14:53.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:53.358][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-06-11 18:14:53.358][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-06-11 18:14:53.359][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-06-11 18:14:53.359][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-06-11 18:14:53.359][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.360][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.360][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 18:14:53.361][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.361][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 18:14:53.361][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 18:14:53.363][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 18:14:53.363][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 18:14:53.364][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 18:14:53.364][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 18:14:53.364][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 18:14:53.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:53.369][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 18:14:53.369][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 18:14:53.370][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-06-11 18:14:53.374][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.374][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.375][ef$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:53.375][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-06-11 18:14:53.379][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.380][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.381][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:53.383][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-06-11 18:14:53.402][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-06-11 18:14:53.402][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-06-11 18:14:53.402][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-06-11 18:14:53.407][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.407][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.407][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 18:14:53.408][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.408][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 18:14:53.413][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 18:14:53.413][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 18:14:53.413][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 18:14:53.414][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 18:14:53.414][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 18:14:53.414][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 18:14:53.415][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.416][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.418][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:14:53.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:14:53.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:53.419][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 18:14:53.419][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 18:14:53.419][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-06-11 18:14:53.424][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.424][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.424][ef$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:53.425][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-06-11 18:14:53.431][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.433][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:53.435][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-06-11 18:14:53.436][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-06-11 18:14:53.436][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-06-11 18:14:53.436][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-06-11 18:14:53.437][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.437][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.438][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 18:14:53.438][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.438][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 18:14:53.439][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 18:14:53.439][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 18:14:53.439][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 18:14:53.439][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 18:14:53.440][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 18:14:53.440][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 18:14:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.441][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.442][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.444][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:14:53.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:53.445][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 18:14:53.445][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 18:14:53.445][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-06-11 18:14:53.450][biodb::testThat]
biodb.INFO [2025-06-11 18:14:53.450][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-06-11 18:14:53.451][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:14:53.451][biodb::testThat]
biodb.TRACE[2025-06-11 18:14:53.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:53.462][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-06-11 18:14:53.462][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-06-11 18:14:53.463][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-06-11 18:14:53.463][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.464][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.464][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 18:14:53.465][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:14:53.465][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 18:14:53.465][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 18:14:53.466][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 18:14:53.466][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 18:14:53.466][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 18:14:53.466][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 18:14:53.467][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 18:14:53.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:14:53.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:14:53.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:14:53.472][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 18:14:53.472][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-06-11 18:14:53.480][biodb::testThat]
biodb.INFO [2025-06-11 18:14:53.480][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-06-11 18:14:53.480][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:14:53.481][biodb::testThat]
biodb.TRACE[2025-06-11 18:14:53.488][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 18:14:53.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 18:14:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.489][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 18:14:53.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 18:14:53.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-11 18:14:53.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-11 18:14:53.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.491][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-11 18:14:53.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-11 18:14:53.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.505][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 18:14:53.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 18:14:53.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.506][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-11 18:14:53.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-11 18:14:53.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.507][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-11 18:14:53.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-11 18:14:53.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:14:53.508][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-11 18:14:53.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-11 18:14:53.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:14:53.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-11 18:14:53.512][biodb::testThat]
biodb.INFO [2025-06-11 18:14:53.512][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-06-11 18:14:53.512][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:14:53.512][biodb::testThat]
biodb.INFO [2025-06-11 18:14:53.515][biodb::testThat]
biodb.INFO [2025-06-11 18:14:53.518][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-06-11 18:14:53.518][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:14:53.519][biodb::testThat]
biodb.INFO [2025-06-11 18:14:53.521][biodb::testThat]
biodb.INFO [2025-06-11 18:14:53.522][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-06-11 18:14:53.522][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:14:53.522][biodb::testThat]
biodb.DEBUG[2025-06-11 18:14:53.523][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-06-11 18:15:03.465][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-06-11 18:15:03.501][biodb::testThat]
biodb.INFO [2025-06-11 18:15:03.502][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-06-11 18:15:03.502][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:15:03.502][biodb::testThat]
biodb.DEBUG[2025-06-11 18:15:06.786][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-06-11 18:15:06.835][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:06.835][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:06.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.836][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.836][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:06.837][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:06.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.837][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.837][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:06.838][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:06.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.838][ef$get] fields variable is a list.
biodb.INFO [2025-06-11 18:15:06.839][biodb::testThat]
biodb.INFO [2025-06-11 18:15:06.839][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-06-11 18:15:06.839][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:15:06.840][biodb::testThat]
biodb.DEBUG[2025-06-11 18:15:06.840][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-06-11 18:15:06.855][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 18:15:06.855][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:06.856][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 18:15:06.863][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-06-11 18:15:06.864][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-06-11 18:15:06.864][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-06-11 18:15:06.864][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 18:15:06.865][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:06.865][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 18:15:06.866][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 18:15:06.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:15:06.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:06.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:06.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:06.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:06.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 18:15:06.870][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:06.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.871][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:06.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:06.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:06.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:06.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:06.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:06.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:06.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:06.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:06.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:06.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:06.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:06.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:15:06.878][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-06-11 18:15:06.878][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-06-11 18:15:06.884][biodb::testThat]
biodb.INFO [2025-06-11 18:15:06.884][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-06-11 18:15:06.884][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:15:06.885][biodb::testThat]
biodb.DEBUG[2025-06-11 18:15:06.888][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-06-11 18:15:06.888][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-06-11 18:15:06.888][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 18:15:06.889][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:06.889][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 18:15:06.890][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-06-11 18:15:06.890][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-06-11 18:15:06.890][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-06-11 18:15:06.891][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 18:15:06.891][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:06.892][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 18:15:06.892][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 18:15:06.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:15:06.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:06.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:06.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:06.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:06.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 18:15:06.908][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:06.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:06.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.910][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:06.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:06.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:06.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:06.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:06.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:06.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:06.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:06.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:06.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:06.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:06.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:06.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:06.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:15:06.917][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-06-11 18:15:06.917][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-06-11 18:15:06.917][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-06-11 18:15:06.921][biodb::testThat]
biodb.INFO [2025-06-11 18:15:06.922][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-06-11 18:15:06.922][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:15:06.922][biodb::testThat]
biodb.INFO [2025-06-11 18:15:06.929][biodb::testThat]
biodb.INFO [2025-06-11 18:15:06.929][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-06-11 18:15:06.929][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:15:06.930][biodb::testThat]
biodb.DEBUG[2025-06-11 18:15:06.930][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:06.931][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:06.931][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 18:15:06.931][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:06.932][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 18:15:06.932][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 18:15:06.932][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 18:15:06.933][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 18:15:06.933][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-06-11 18:15:06.935][biodb::testThat]
biodb.INFO [2025-06-11 18:15:06.935][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-06-11 18:15:06.936][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:15:06.936][biodb::testThat]
biodb.DEBUG[2025-06-11 18:15:06.937][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:06.937][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:06.937][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 18:15:06.938][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:06.938][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 18:15:06.938][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 18:15:06.938][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 18:15:06.939][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 18:15:06.941][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-06-11 18:15:06.943][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:06.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:06.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.944][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.945][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:06.945][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:06.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.945][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:06.945][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:06.946][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:06.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:06.946][ef$get] fields variable is a list.
biodb.INFO [2025-06-11 18:15:06.946][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-06-11 18:15:06.947][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-06-11 18:15:06.949][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-06-11 18:15:06.949][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-06-11 18:15:06.949][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:06.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:06.950][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:06.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:06.950][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-06-11 18:15:06.952][biodb::testContext]
biodb.INFO [2025-06-11 18:15:06.952][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 18:15:06.952][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-06-11 18:15:06.952][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 18:15:06.953][biodb::testContext]
biodb.INFO [2025-06-11 18:15:06.954][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.0.
biodb.DEBUG[2025-06-11 18:15:06.955][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-06-11 18:15:06.956][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 18:15:06.956][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-06-11 18:15:06.957][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-06-11 18:15:06.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.957][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-06-11 18:15:06.958][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-06-11 18:15:06.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.959][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-06-11 18:15:06.959][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-06-11 18:15:06.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.960][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-06-11 18:15:06.960][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-06-11 18:15:06.960][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-06-11 18:15:06.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.961][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-06-11 18:15:06.961][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-06-11 18:15:06.962][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-06-11 18:15:06.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.963][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-06-11 18:15:06.963][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-06-11 18:15:06.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.964][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-06-11 18:15:06.964][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-06-11 18:15:06.964][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-06-11 18:15:06.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.965][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-06-11 18:15:06.966][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-06-11 18:15:06.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.966][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-06-11 18:15:06.967][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-06-11 18:15:06.967][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-06-11 18:15:06.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.968][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-06-11 18:15:06.968][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-06-11 18:15:06.968][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-06-11 18:15:06.969][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-06-11 18:15:06.969][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-06-11 18:15:06.969][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-06-11 18:15:06.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.970][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-06-11 18:15:06.970][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-06-11 18:15:06.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.974][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-06-11 18:15:06.974][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-06-11 18:15:06.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.975][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-06-11 18:15:06.975][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-06-11 18:15:06.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.976][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-06-11 18:15:06.976][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-06-11 18:15:06.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.977][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-06-11 18:15:06.977][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-06-11 18:15:06.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.978][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-06-11 18:15:06.979][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-06-11 18:15:06.984][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-06-11 18:15:06.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.986][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-06-11 18:15:06.986][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-06-11 18:15:06.986][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-06-11 18:15:06.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:06.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:06.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:06.987][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-06-11 18:15:06.988][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:06.988][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-06-11 18:15:06.988][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:06.989][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:15:06.989][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:06.989][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 18:15:06.989][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:06.990][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:15:06.990][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 18:15:06.990][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:15:06.990][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:06.991][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-06-11 18:15:06.991][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:15:06.991][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:06.991][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:06.992][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 18:15:06.992][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 18:15:06.992][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 18:15:06.992][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 18:15:06.992][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 18:15:06.992][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 18:15:06.992][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:06.992][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:06.993][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:15:06.993][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:06.993][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:06.993][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:15:06.994][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:06.994][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:15:06.994][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:15:06.994][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:06.995][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:06.995][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-06-11 18:15:06.995][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:06.996][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 18:15:06.996][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:06.996][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:15:06.996][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:06.997][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 18:15:06.997][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:06.997][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:15:06.997][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 18:15:06.998][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:15:06.998][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:06.998][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-06-11 18:15:06.998][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:15:06.999][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:06.999][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:06.999][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 18:15:06.999][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 18:15:06.999][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 18:15:06.999][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 18:15:06.999][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 18:15:06.999][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 18:15:07.000][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.000][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.000][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:15:07.000][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.001][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.001][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.001][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.001][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:15:07.002][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:15:07.002][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.002][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.002][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-06-11 18:15:07.003][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.003][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-06-11 18:15:07.003][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.004][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:15:07.004][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.004][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.004][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.005][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.005][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 18:15:07.005][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:15:07.005][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.006][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-06-11 18:15:07.006][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:15:07.006][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.008][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.009][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.009][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 18:15:07.009][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.010][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.010][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:15:07.010][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.010][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.010][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.011][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.011][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:15:07.011][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:15:07.011][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.012][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.012][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-06-11 18:15:07.012][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.013][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 18:15:07.013][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.013][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:15:07.014][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.014][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.014][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.014][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.015][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 18:15:07.015][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:15:07.015][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.015][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-06-11 18:15:07.016][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:15:07.016][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.016][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.016][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.017][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 18:15:07.017][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.017][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.017][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:15:07.018][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.018][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.018][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.018][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.019][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:15:07.019][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:15:07.019][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.019][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.020][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 18:15:07.020][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.042][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-06-11 18:15:07.042][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-06-11 18:15:07.043][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-06-11 18:15:07.043][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-06-11 18:15:07.043][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-11 18:15:07.044][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 18:15:07.044][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-06-11 18:15:07.045][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-06-11 18:15:07.045][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-06-11 18:15:07.045][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 18:15:07.046][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 18:15:07.046][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-06-11 18:15:07.046][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-06-11 18:15:07.047][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-06-11 18:15:07.047][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-06-11 18:15:07.047][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 18:15:07.048][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-06-11 18:15:07.048][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-06-11 18:15:07.049][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-11 18:15:07.049][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-06-11 18:15:07.049][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-06-11 18:15:07.050][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-06-11 18:15:07.050][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-06-11 18:15:07.050][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-06-11 18:15:07.051][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-06-11 18:15:07.051][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-06-11 18:15:07.052][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-06-11 18:15:07.052][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-06-11 18:15:07.052][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-06-11 18:15:07.053][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-06-11 18:15:07.053][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-06-11 18:15:07.053][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-06-11 18:15:07.054][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-06-11 18:15:07.054][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-06-11 18:15:07.054][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-06-11 18:15:07.055][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-06-11 18:15:07.055][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-06-11 18:15:07.056][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-06-11 18:15:07.056][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-06-11 18:15:07.056][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-06-11 18:15:07.057][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-06-11 18:15:07.057][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-06-11 18:15:07.057][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-06-11 18:15:07.058][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-06-11 18:15:07.058][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-06-11 18:15:07.059][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-06-11 18:15:07.059][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-06-11 18:15:07.059][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-06-11 18:15:07.060][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-06-11 18:15:07.060][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-06-11 18:15:07.060][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-06-11 18:15:07.061][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-06-11 18:15:07.061][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-06-11 18:15:07.061][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-06-11 18:15:07.062][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-06-11 18:15:07.062][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-06-11 18:15:07.063][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-06-11 18:15:07.063][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-06-11 18:15:07.063][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-06-11 18:15:07.064][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-06-11 18:15:07.064][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-06-11 18:15:07.064][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-06-11 18:15:07.065][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-06-11 18:15:07.067][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-06-11 18:15:07.068][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-06-11 18:15:07.068][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-06-11 18:15:07.068][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-11 18:15:07.069][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-11 18:15:07.069][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-06-11 18:15:07.070][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-06-11 18:15:07.070][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-06-11 18:15:07.070][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-06-11 18:15:07.071][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-06-11 18:15:07.071][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-06-11 18:15:07.071][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-06-11 18:15:07.072][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-06-11 18:15:07.072][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-06-11 18:15:07.073][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-06-11 18:15:07.073][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-06-11 18:15:07.073][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-06-11 18:15:07.074][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-06-11 18:15:07.074][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-06-11 18:15:07.074][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-06-11 18:15:07.075][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-06-11 18:15:07.075][initialize] This is biodb version 1.17.0.
biodb.DEBUG[2025-06-11 18:15:07.076][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 18:15:07.076][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.076][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.107][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-06-11 18:15:07.108][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 18:15:07.109][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.109][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.109][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.109][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:15:07.110][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.110][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-06-11 18:15:07.110][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.110][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.111][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-06-11 18:15:07.111][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:15:07.111][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.111][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-06-11 18:15:07.112][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-06-11 18:15:07.113][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-06-11 18:15:07.113][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.113][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.113][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:15:07.114][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.114][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.114][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.114][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 18:15:07.114][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-06-11 18:15:07.115][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:15:07.115][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:15:07.115][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.115][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.116][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-06-11 18:15:07.116][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 18:15:07.117][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 18:15:07.117][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 18:15:07.117][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 18:15:07.118][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 18:15:07.119][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-06-11 18:15:07.119][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 18:15:07.119][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 18:15:07.120][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:15:07.120][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:15:07.120][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-06-11 18:15:07.121][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-06-11 18:15:07.121][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 18:15:07.121][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-06-11 18:15:07.121][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:15:07.121][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:15:07.122][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-06-11 18:15:07.122][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-06-11 18:15:07.122][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 18:15:07.122][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 18:15:07.123][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:15:07.123][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:15:07.123][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 18:15:07.124][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:15:07.124][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-06-11 18:15:07.124][biodb::testThat]
biodb.INFO [2025-06-11 18:15:07.125][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-06-11 18:15:07.125][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:15:07.125][biodb::testThat]
biodb.DEBUG[2025-06-11 18:15:07.128][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.129][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.129][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 18:15:07.130][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.130][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 18:15:07.130][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 18:15:07.131][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 18:15:07.131][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 18:15:07.131][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 18:15:07.132][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-06-11 18:15:07.134][biodb::testThat]
biodb.INFO [2025-06-11 18:15:07.134][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-06-11 18:15:07.135][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:15:07.135][biodb::testThat]
biodb.DEBUG[2025-06-11 18:15:07.135][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-06-11 18:15:07.136][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 18:15:07.136][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.136][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 18:15:07.137][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-06-11 18:15:07.137][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-06-11 18:15:07.138][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-06-11 18:15:07.139][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 18:15:07.139][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 18:15:07.139][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 18:15:07.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:15:07.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 18:15:07.144][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.145][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.146][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.147][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.147][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.148][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.149][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.149][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.149][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.150][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.151][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.151][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.151][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.152][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.154][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.155][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.155][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.156][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.157][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.157][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.158][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.160][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.164][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.164][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.164][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.166][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.166][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.167][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.168][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.169][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.171][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.173][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.174][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.175][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.176][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.177][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.177][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.178][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.179][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.179][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.179][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.181][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.181][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.182][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 18:15:07.183][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.183][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.183][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 18:15:07.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.188][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.189][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.190][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.193][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.194][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.195][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.211][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.213][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.225][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.226][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.227][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.237][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.238][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.239][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.243][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 18:15:07.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.247][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 18:15:07.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.256][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.257][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.259][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:15:07.266][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-06-11 18:15:07.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-11 18:15:07.272][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-06-11 18:15:07.272][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-06-11 18:15:07.272][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-06-11 18:15:07.273][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-06-11 18:15:07.273][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.273][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.274][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-06-11 18:15:07.275][biodb::testContext]
biodb.INFO [2025-06-11 18:15:07.276][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 18:15:07.276][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-06-11 18:15:07.276][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-11 18:15:07.276][biodb::testContext]
biodb.INFO [2025-06-11 18:15:07.278][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.0.
biodb.DEBUG[2025-06-11 18:15:07.278][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-06-11 18:15:07.280][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 18:15:07.280][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-06-11 18:15:07.281][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-06-11 18:15:07.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.284][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-06-11 18:15:07.284][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-06-11 18:15:07.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.285][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-06-11 18:15:07.286][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-06-11 18:15:07.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.286][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-06-11 18:15:07.287][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-06-11 18:15:07.287][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-06-11 18:15:07.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.288][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-06-11 18:15:07.288][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-06-11 18:15:07.288][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-06-11 18:15:07.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.289][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-06-11 18:15:07.290][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-06-11 18:15:07.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.291][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-06-11 18:15:07.291][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-06-11 18:15:07.291][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-06-11 18:15:07.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.292][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-06-11 18:15:07.292][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-06-11 18:15:07.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.293][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-06-11 18:15:07.294][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-06-11 18:15:07.294][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-06-11 18:15:07.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.295][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-06-11 18:15:07.295][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-06-11 18:15:07.295][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-06-11 18:15:07.296][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-06-11 18:15:07.296][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-06-11 18:15:07.296][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-06-11 18:15:07.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.297][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-06-11 18:15:07.297][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-06-11 18:15:07.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.298][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-06-11 18:15:07.298][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-06-11 18:15:07.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.299][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-06-11 18:15:07.299][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-06-11 18:15:07.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.300][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-06-11 18:15:07.301][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-06-11 18:15:07.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.302][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-06-11 18:15:07.302][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-06-11 18:15:07.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.303][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-06-11 18:15:07.303][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-06-11 18:15:07.308][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-06-11 18:15:07.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.310][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-06-11 18:15:07.310][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-06-11 18:15:07.310][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-06-11 18:15:07.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.311][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-06-11 18:15:07.312][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.312][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-06-11 18:15:07.312][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.313][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:15:07.313][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.313][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.313][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.314][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.314][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 18:15:07.314][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:15:07.314][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.315][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-06-11 18:15:07.315][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:15:07.315][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.318][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.318][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 18:15:07.318][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 18:15:07.318][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 18:15:07.318][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 18:15:07.318][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 18:15:07.318][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 18:15:07.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.319][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.319][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:15:07.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.320][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.320][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.320][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.320][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:15:07.321][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:15:07.321][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.321][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.321][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-06-11 18:15:07.322][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.322][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 18:15:07.322][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.323][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:15:07.323][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.323][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.324][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.324][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.324][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 18:15:07.324][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:15:07.325][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.325][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-06-11 18:15:07.325][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:15:07.325][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.326][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.326][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 18:15:07.326][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-11 18:15:07.326][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-11 18:15:07.326][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-11 18:15:07.326][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-11 18:15:07.326][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 18:15:07.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.327][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:15:07.327][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.328][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.328][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.328][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:15:07.328][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:15:07.329][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.329][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.329][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-06-11 18:15:07.330][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.330][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-06-11 18:15:07.330][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.330][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:15:07.331][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.331][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.331][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.332][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.332][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-11 18:15:07.332][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:15:07.332][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.333][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-06-11 18:15:07.333][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:15:07.333][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.333][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.334][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.334][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 18:15:07.334][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.334][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.335][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:15:07.335][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.335][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.335][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.336][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.336][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:15:07.336][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:15:07.336][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.337][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.337][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-06-11 18:15:07.337][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.338][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-06-11 18:15:07.338][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.338][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:15:07.338][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.339][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.339][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.339][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.339][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-11 18:15:07.340][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:15:07.340][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.340][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-06-11 18:15:07.340][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:15:07.341][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.341][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.341][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.341][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-11 18:15:07.342][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.342][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.342][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:15:07.342][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.343][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.343][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.343][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.343][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:15:07.343][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:15:07.344][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.344][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.344][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 18:15:07.347][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.367][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-06-11 18:15:07.367][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-06-11 18:15:07.367][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-06-11 18:15:07.368][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-06-11 18:15:07.368][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-11 18:15:07.369][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 18:15:07.369][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-06-11 18:15:07.369][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-06-11 18:15:07.370][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-06-11 18:15:07.370][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 18:15:07.370][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 18:15:07.371][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-06-11 18:15:07.371][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-06-11 18:15:07.371][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-06-11 18:15:07.372][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-06-11 18:15:07.372][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 18:15:07.373][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-06-11 18:15:07.375][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-06-11 18:15:07.375][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-11 18:15:07.376][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-06-11 18:15:07.376][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-06-11 18:15:07.376][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-06-11 18:15:07.377][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-06-11 18:15:07.377][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-06-11 18:15:07.378][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-06-11 18:15:07.378][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-06-11 18:15:07.378][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-06-11 18:15:07.379][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-06-11 18:15:07.379][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-06-11 18:15:07.379][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-06-11 18:15:07.380][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-06-11 18:15:07.380][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-06-11 18:15:07.380][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-06-11 18:15:07.381][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-06-11 18:15:07.381][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-06-11 18:15:07.382][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-06-11 18:15:07.382][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-06-11 18:15:07.382][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-06-11 18:15:07.383][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-06-11 18:15:07.383][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-06-11 18:15:07.383][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-06-11 18:15:07.384][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-06-11 18:15:07.384][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-06-11 18:15:07.384][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-06-11 18:15:07.385][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-06-11 18:15:07.385][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-06-11 18:15:07.385][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-06-11 18:15:07.386][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-06-11 18:15:07.386][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-06-11 18:15:07.386][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-06-11 18:15:07.387][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-06-11 18:15:07.387][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-06-11 18:15:07.387][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-06-11 18:15:07.388][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-06-11 18:15:07.388][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-06-11 18:15:07.389][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-06-11 18:15:07.389][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-06-11 18:15:07.389][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-06-11 18:15:07.390][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-06-11 18:15:07.390][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-06-11 18:15:07.390][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-06-11 18:15:07.391][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-06-11 18:15:07.391][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-06-11 18:15:07.391][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-06-11 18:15:07.392][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-06-11 18:15:07.392][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-06-11 18:15:07.393][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-11 18:15:07.393][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-11 18:15:07.393][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-06-11 18:15:07.394][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-06-11 18:15:07.394][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-06-11 18:15:07.394][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-06-11 18:15:07.395][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-06-11 18:15:07.395][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-06-11 18:15:07.395][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-06-11 18:15:07.396][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-06-11 18:15:07.396][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-06-11 18:15:07.397][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-06-11 18:15:07.397][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-06-11 18:15:07.397][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-06-11 18:15:07.398][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-06-11 18:15:07.398][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-06-11 18:15:07.398][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-06-11 18:15:07.399][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-06-11 18:15:07.399][initialize] This is biodb version 1.17.0.
biodb.DEBUG[2025-06-11 18:15:07.400][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-11 18:15:07.400][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.400][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-11 18:15:07.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.432][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-06-11 18:15:07.433][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 18:15:07.433][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.434][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.434][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.434][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-11 18:15:07.434][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.435][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-06-11 18:15:07.435][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.435][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.435][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-06-11 18:15:07.436][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-11 18:15:07.436][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.436][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-06-11 18:15:07.436][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-06-11 18:15:07.437][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-06-11 18:15:07.438][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-06-11 18:15:07.438][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.438][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.438][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-11 18:15:07.439][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-11 18:15:07.439][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-11 18:15:07.439][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-11 18:15:07.439][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 18:15:07.439][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-06-11 18:15:07.439][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:15:07.440][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:15:07.440][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-06-11 18:15:07.440][self$setPropertyValue]
biodb.DEBUG[2025-06-11 18:15:07.441][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-06-11 18:15:07.441][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-11 18:15:07.441][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-11 18:15:07.442][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-11 18:15:07.442][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-11 18:15:07.443][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 18:15:07.443][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-06-11 18:15:07.444][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 18:15:07.444][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 18:15:07.444][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:15:07.445][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:15:07.445][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-06-11 18:15:07.445][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-06-11 18:15:07.446][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-06-11 18:15:07.446][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-06-11 18:15:07.446][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-11 18:15:07.446][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-11 18:15:07.446][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-06-11 18:15:07.446][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-06-11 18:15:07.447][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-06-11 18:15:07.447][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 18:15:07.447][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:15:07.448][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:15:07.448][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-06-11 18:15:07.448][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-06-11 18:15:07.449][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-06-11 18:15:07.449][biodb::testThat]
biodb.INFO [2025-06-11 18:15:07.449][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-06-11 18:15:07.450][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-11 18:15:07.450][biodb::testThat]
biodb.DEBUG[2025-06-11 18:15:07.451][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-06-11 18:15:07.451][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-06-11 18:15:07.451][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-06-11 18:15:07.452][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.452][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.453][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 18:15:07.453][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.453][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 18:15:07.454][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 18:15:07.454][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 18:15:07.454][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 18:15:07.455][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 18:15:07.455][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 18:15:07.455][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-06-11 18:15:07.456][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-06-11 18:15:07.456][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 18:15:07.456][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.457][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 18:15:07.457][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-06-11 18:15:07.458][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-06-11 18:15:07.458][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-06-11 18:15:07.459][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 18:15:07.459][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 18:15:07.459][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 18:15:07.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:15:07.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 18:15:07.467][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.467][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.469][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.469][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.470][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.470][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.471][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.471][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.472][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.472][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.473][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.474][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.474][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.474][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.476][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.478][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.478][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.478][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.480][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.480][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.481][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.482][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.483][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.484][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.484][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.485][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.486][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.486][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.487][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.488][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.489][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.489][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.494][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.496][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.497][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.498][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.498][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.499][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.500][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.502][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.502][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.502][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.503][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.504][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.505][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.506][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 18:15:07.506][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.507][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.507][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 18:15:07.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.511][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.512][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.513][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.514][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.515][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.516][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.535][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.536][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.537][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.548][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.549][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.555][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.566][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.567][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.568][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.572][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 18:15:07.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.576][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 18:15:07.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.584][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.586][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.588][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:15:07.595][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-06-11 18:15:07.596][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.597][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.598][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.599][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:15:07.600][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 18:15:07.600][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 18:15:07.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:15:07.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.604][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-06-11 18:15:07.604][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-06-11 18:15:07.605][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.605][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-06-11 18:15:07.606][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-06-11 18:15:07.606][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-06-11 18:15:07.607][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-06-11 18:15:07.607][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-06-11 18:15:07.607][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-06-11 18:15:07.608][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-06-11 18:15:07.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:15:07.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 18:15:07.612][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.612][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.613][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.614][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.615][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.615][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.615][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.619][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.620][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.620][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.621][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.622][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.622][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.622][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.623][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.624][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.626][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.626][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.627][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.628][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.628][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.629][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.629][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.630][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.630][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.631][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.632][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.632][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.633][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.634][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.635][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.635][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.636][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.637][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.637][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.638][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.639][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.639][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.640][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.641][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.641][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.643][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.643][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.645][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.645][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.649][ef$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.649][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.650][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.650][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.652][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.652][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.654][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 18:15:07.654][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.654][ef$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.655][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-06-11 18:15:07.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.659][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.660][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.661][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-11 18:15:07.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.662][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.663][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.664][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-06-11 18:15:07.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-11 18:15:07.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-06-11 18:15:07.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-06-11 18:15:07.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-06-11 18:15:07.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-06-11 18:15:07.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.683][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.684][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.685][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.686][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-11 18:15:07.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-11 18:15:07.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-11 18:15:07.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-11 18:15:07.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.695][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.696][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.698][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-11 18:15:07.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-11 18:15:07.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-06-11 18:15:07.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.711][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.712][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.713][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-06-11 18:15:07.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-11 18:15:07.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-11 18:15:07.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.717][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 18:15:07.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.722][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-06-11 18:15:07.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-11 18:15:07.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-11 18:15:07.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-11 18:15:07.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.728][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.729][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.731][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-06-11 18:15:07.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-11 18:15:07.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-11 18:15:07.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:15:07.741][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-06-11 18:15:07.741][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.743][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.744][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.745][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:15:07.746][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 18:15:07.746][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-06-11 18:15:07.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:15:07.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.751][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-06-11 18:15:07.751][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-06-11 18:15:07.752][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-06-11 18:15:07.752][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.752][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.753][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 18:15:07.753][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.753][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 18:15:07.754][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 18:15:07.754][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 18:15:07.754][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 18:15:07.755][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 18:15:07.755][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 18:15:07.755][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 18:15:07.756][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.757][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.758][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.759][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.760][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.761][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.762][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:15:07.763][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 18:15:07.763][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 18:15:07.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:15:07.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 18:15:07.767][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.768][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.769][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.772][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.774][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.776][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.777][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:15:07.778][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-06-11 18:15:07.778][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 18:15:07.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:15:07.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-11 18:15:07.783][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-06-11 18:15:07.784][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-06-11 18:15:07.784][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-06-11 18:15:07.784][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.785][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.785][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-06-11 18:15:07.786][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-06-11 18:15:07.786][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-06-11 18:15:07.786][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-06-11 18:15:07.786][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-06-11 18:15:07.787][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-06-11 18:15:07.787][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-06-11 18:15:07.787][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-06-11 18:15:07.787][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-06-11 18:15:07.788][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.789][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.790][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.791][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.792][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.793][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.794][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:15:07.795][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-06-11 18:15:07.795][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-06-11 18:15:07.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:15:07.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-11 18:15:07.799][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.800][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.801][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.802][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.803][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.807][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-11 18:15:07.809][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-06-11 18:15:07.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-06-11 18:15:07.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-11 18:15:07.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-11 18:15:07.810][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-06-11 18:15:07.810][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-06-11 18:15:07.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-11 18:15:07.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-06-11 18:15:07.816][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-06-11 18:15:07.816][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-06-11 18:15:07.816][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-06-11 18:15:07.817][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-06-11 18:15:07.817][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-11 18:15:07.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-11 18:15:07.817][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-11 18:15:07.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-11 18:15:07.818][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-06-11 18:15:07.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  2.624   0.162  16.036

CHECK results for biodbHmdb on kjohnson3

Summary

Command output

Installation output

Tests output

Example timings