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This page was generated on 2025-08-09 12:05 -0400 (Sat, 09 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4553
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
kjohnson3macOS 13.7.1 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4537
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 965/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiCool 1.9.1  (landing page)
Jacques Serizay
Snapshot Date: 2025-08-08 13:45 -0400 (Fri, 08 Aug 2025)
git_url: https://git.bioconductor.org/packages/HiCool
git_branch: devel
git_last_commit: 1422bc6
git_last_commit_date: 2025-07-17 02:50:36 -0400 (Thu, 17 Jul 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64... NOT SUPPORTED ...
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped

CHECK results for HiCool on nebbiolo2

To the developers/maintainers of the HiCool package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCool.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HiCool
Version: 1.9.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:HiCool.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings HiCool_1.9.1.tar.gz
StartedAt: 2025-08-08 23:13:42 -0400 (Fri, 08 Aug 2025)
EndedAt: 2025-08-08 23:21:13 -0400 (Fri, 08 Aug 2025)
EllapsedTime: 451.5 seconds
RetCode: 0
Status:   OK  
CheckDir: HiCool.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:HiCool.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings HiCool_1.9.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/HiCool.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘HiCool/DESCRIPTION’ ... OK
* this is package ‘HiCool’ version ‘1.9.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HiCool’ can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See ‘/home/biocbuild/bbs-3.22-bioc/meat/HiCool.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘rmarkdown’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘basilisk’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
HiCReport: no visible global function definition for ‘pairsFile’
getLoops: no visible global function definition for ‘fileName’
getLoops: no visible global function definition for
  ‘topologicalFeatures<-’
getLoops: no visible global function definition for ‘metadata<-’
Undefined global functions or variables:
  fileName metadata<- pairsFile topologicalFeatures<-
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
HiCool    66.122  5.030  60.396
HiCReport 23.992  1.885  26.698
getLoops   5.999  0.541   6.707
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 5 NOTEs
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/HiCool.Rcheck/00check.log’
for details.

Installation output

HiCool.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL HiCool
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘HiCool’ ...
** this is package ‘HiCool’ version ‘1.9.1’
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HiCool)

Tests output

HiCool.Rcheck/tests/testthat.Rout


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(HiCool)
Loading required package: HiCExperiment
Consider using the `HiContacts` package to perform advanced genomic operations 
on `HiCExperiment` objects.

Read "Orchestrating Hi-C analysis with Bioconductor" online book to learn more:
https://js2264.github.io/OHCA/
> test_check("HiCool")
see ?HiContactsData and browseVignettes('HiContactsData') for documentation
loading from cache
see ?HiContactsData and browseVignettes('HiContactsData') for documentation
loading from cache
HiCool :: Recovering bowtie2 genome index from AWS iGenomes...
HiCool :: Initializing processing of fastq files [tmp folder: /tmp/RtmpUkNrz9/VF0YKW]...
HiCool :: Mapping fastq files...
INFO:cooler.create:Writing chunk 0: /tmp/RtmpUkNrz9/VF0YKW/tmpf7hlgx0c.multi.cool::0
INFO:cooler.create:Creating cooler at "/tmp/RtmpUkNrz9/VF0YKW/tmpf7hlgx0c.multi.cool::/0"
INFO:cooler.create:Writing chroms
INFO:cooler.create:Writing bins
INFO:cooler.create:Writing pixels
INFO:cooler.create:Writing indexes
INFO:cooler.create:Writing info
INFO:cooler.create:Merging into /tmp/RtmpUkNrz9/VF0YKW/15c427129b3999_7833^mapped-R64-1-1^VF0YKW.cool
INFO:cooler.create:Creating cooler at "/tmp/RtmpUkNrz9/VF0YKW/15c427129b3999_7833^mapped-R64-1-1^VF0YKW.cool::/"
INFO:cooler.create:Writing chroms
INFO:cooler.create:Writing bins
INFO:cooler.create:Writing pixels
INFO:cooler._reduce:n_merge_epochs: 1
INFO:cooler._reduce:nnzs: [49489]
INFO:cooler._reduce:records consumed: [49489]
INFO:cooler.create:Writing indexes
INFO:cooler.create:Writing info
INFO:cooler.cli.balance:Balancing "/tmp/RtmpUkNrz9/VF0YKW/15c427129b3999_7833^mapped-R64-1-1^VF0YKW.mcool::/resolutions/1000"
INFO:cooler._balance:variance is 5.052388718005147
INFO:cooler._balance:variance is 2.214895578366685
INFO:cooler._balance:variance is 0.959611918968926
INFO:cooler._balance:variance is 0.9137724134740707
INFO:cooler._balance:variance is 0.4931935749748726
INFO:cooler._balance:variance is 0.5104112301803088
INFO:cooler._balance:variance is 0.3030412633621025
INFO:cooler._balance:variance is 0.3206073971373524
INFO:cooler._balance:variance is 0.2021512713028938
INFO:cooler._balance:variance is 0.21544260447940822
INFO:cooler._balance:variance is 0.14176679139321993
INFO:cooler._balance:variance is 0.15159479954582275
INFO:cooler._balance:variance is 0.10300353738363405
INFO:cooler._balance:variance is 0.11043253437564962
INFO:cooler._balance:variance is 0.07692908018793707
INFO:cooler._balance:variance is 0.08271637782504951
INFO:cooler._balance:variance is 0.058779618947199616
INFO:cooler._balance:variance is 0.06341719469471178
INFO:cooler._balance:variance is 0.04580498896488391
INFO:cooler._balance:variance is 0.04961002257524428
INFO:cooler._balance:variance is 0.036325336773171894
INFO:cooler._balance:variance is 0.0395062262630024
INFO:cooler._balance:variance is 0.02926999547331903
INFO:cooler._balance:variance is 0.03196783117919654
INFO:cooler._balance:variance is 0.023933408516673357
INFO:cooler._balance:variance is 0.026247072939560325
INFO:cooler._balance:variance is 0.01983791778054197
INFO:cooler._balance:variance is 0.02183920649400488
INFO:cooler._balance:variance is 0.016652870706641603
INFO:cooler._balance:variance is 0.018395683309915024
INFO:cooler._balance:variance is 0.014145048035023953
INFO:cooler._balance:variance is 0.01567106723270775
INFO:cooler._balance:variance is 0.01214729237863265
INFO:cooler._balance:variance is 0.013489570646146783
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INFO:cooler._balance:variance is 0.01172339510015703
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INFO:cooler._balance:variance is 0.010278386679186092
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INFO:cooler._balance:variance is 0.004462031744942801
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INFO:cooler._balance:variance is 0.004110186544187422
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INFO:cooler._balance:variance is 0.0023915538809925717
INFO:cooler._balance:variance is 0.002606851282615584
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INFO:cooler._balance:variance is 0.001197976842077736
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INFO:cooler._balance:variance is 0.0009540669303151959
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INFO:cooler._balance:variance is 0.0005993632607955541
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INFO:cooler._balance:variance is 0.0004896053457562297
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INFO:cooler._balance:variance is 0.0003432873284660664
INFO:cooler._balance:variance is 0.0003250367415875134
INFO:cooler._balance:variance is 0.0003359503222445694
INFO:cooler._balance:variance is 0.0003182722183130384
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INFO:cooler._balance:variance is 0.00031171554298930424
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INFO:cooler._balance:variance is 0.00029919254488825164
INFO:cooler._balance:variance is 0.00030882314438959447
INFO:cooler._balance:variance is 0.0002932106505160741
INFO:cooler._balance:variance is 0.00030255210507246265
ERROR:cooler.cli.balance:Iteration limit reached without convergence
ERROR:cooler.cli.balance:Storing final result. Check log to assess convergence.
INFO:cooler.cli.balance:Balancing "/tmp/RtmpUkNrz9/VF0YKW/15c427129b3999_7833^mapped-R64-1-1^VF0YKW.mcool::/resolutions/2000"
INFO:cooler._balance:variance is 15.503393684670705
INFO:cooler._balance:variance is 2.159171815073965
INFO:cooler._balance:variance is 0.7629647296452843
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INFO:cooler._balance:variance is 0.24712164893997599
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INFO:cooler._balance:variance is 0.11337114307610192
INFO:cooler._balance:variance is 0.08229608738175044
INFO:cooler._balance:variance is 0.05819690070301922
INFO:cooler._balance:variance is 0.043217506992446836
INFO:cooler._balance:variance is 0.03148236623014618
INFO:cooler._balance:variance is 0.023651674270459538
INFO:cooler._balance:variance is 0.017540262098423832
INFO:cooler._balance:variance is 0.01326814324177899
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INFO:cooler._balance:variance is 0.007560342739710598
INFO:cooler._balance:variance is 0.0057112793045521375
INFO:cooler._balance:variance is 0.004351999102252173
INFO:cooler._balance:variance is 0.0033033171696634123
INFO:cooler._balance:variance is 0.0025221909598134263
INFO:cooler._balance:variance is 0.0019205682082392228
INFO:cooler._balance:variance is 0.0014684685582731188
INFO:cooler._balance:variance is 0.001120643175531211
INFO:cooler._balance:variance is 0.000857689691792078
INFO:cooler._balance:variance is 0.0006555321081932906
INFO:cooler._balance:variance is 0.0005020667089232658
INFO:cooler._balance:variance is 0.00038414175812764915
INFO:cooler._balance:variance is 0.00029435929223840725
INFO:cooler._balance:variance is 0.00022539332516751837
INFO:cooler._balance:variance is 0.0001727769049862047
INFO:cooler._balance:variance is 0.00013237007125342735
INFO:cooler._balance:variance is 0.00010149625689981267
INFO:cooler._balance:variance is 7.779110052874081e-05
INFO:cooler._balance:variance is 5.9658879391230744e-05
INFO:cooler._balance:variance is 4.5738761803537185e-05
INFO:cooler._balance:variance is 3.508265482136982e-05
INFO:cooler._balance:variance is 2.6902818137306004e-05
INFO:cooler._balance:variance is 2.06372894596461e-05
INFO:cooler._balance:variance is 1.582813247281454e-05
INFO:cooler._balance:variance is 1.2142822760103308e-05
INFO:cooler._balance:variance is 9.314306347472922e-06
INFO:cooler.cli.balance:Balancing "/tmp/RtmpUkNrz9/VF0YKW/15c427129b3999_7833^mapped-R64-1-1^VF0YKW.mcool::/resolutions/5000"
INFO:cooler._balance:variance is 50.72777724794358
INFO:cooler._balance:variance is 6.155438463892617
INFO:cooler._balance:variance is 2.1769359381756206
INFO:cooler._balance:variance is 1.1080590435212
INFO:cooler._balance:variance is 0.658575968400699
INFO:cooler._balance:variance is 0.4099344656365322
INFO:cooler._balance:variance is 0.2691853492339695
INFO:cooler._balance:variance is 0.177286395866192
INFO:cooler._balance:variance is 0.11996897249810158
INFO:cooler._balance:variance is 0.0808444607291353
INFO:cooler._balance:variance is 0.055315016080294606
INFO:cooler._balance:variance is 0.03768604294801265
INFO:cooler._balance:variance is 0.025902469935161383
INFO:cooler._balance:variance is 0.017747981754970707
INFO:cooler._balance:variance is 0.012223418902812044
INFO:cooler._balance:variance is 0.008401365843751231
INFO:cooler._balance:variance is 0.005791944701139379
INFO:cooler._balance:variance is 0.003987897220791211
INFO:cooler._balance:variance is 0.002750711999180832
INFO:cooler._balance:variance is 0.0018958591998482985
INFO:cooler._balance:variance is 0.0013080803816234872
INFO:cooler._balance:variance is 0.0009021027072372058
INFO:cooler._balance:variance is 0.0006225288203982488
INFO:cooler._balance:variance is 0.00042947451368304613
INFO:cooler._balance:variance is 0.000296405994251042
INFO:cooler._balance:variance is 0.0002045314547074126
INFO:cooler._balance:variance is 0.00014116881860909756
INFO:cooler._balance:variance is 9.742503988422015e-05
INFO:cooler._balance:variance is 6.724623353794083e-05
INFO:cooler._balance:variance is 4.641265111884673e-05
INFO:cooler._balance:variance is 3.203656343626175e-05
INFO:cooler._balance:variance is 2.211247720013596e-05
INFO:cooler._balance:variance is 1.5263528364856064e-05
INFO:cooler._balance:variance is 1.0535643882988183e-05
INFO:cooler._balance:variance is 7.272502830045678e-06
INFO:cooler.cli.balance:Balancing "/tmp/RtmpUkNrz9/VF0YKW/15c427129b3999_7833^mapped-R64-1-1^VF0YKW.mcool::/resolutions/10000"
INFO:cooler._balance:variance is 107.48888927469108
INFO:cooler._balance:variance is 15.479337011622665
INFO:cooler._balance:variance is 6.183694785119702
INFO:cooler._balance:variance is 3.0986537316001916
INFO:cooler._balance:variance is 1.776039395617909
INFO:cooler._balance:variance is 1.021246405554361
INFO:cooler._balance:variance is 0.616051153552416
INFO:cooler._balance:variance is 0.3672113119916827
INFO:cooler._balance:variance is 0.2237378691156794
INFO:cooler._balance:variance is 0.13513311075502032
INFO:cooler._balance:variance is 0.08250210604841587
INFO:cooler._balance:variance is 0.050107208397907735
INFO:cooler._balance:variance is 0.030600557450056836
INFO:cooler._balance:variance is 0.018632149090815932
INFO:cooler._balance:variance is 0.011377860328779807
INFO:cooler._balance:variance is 0.00693619190995969
INFO:cooler._balance:variance is 0.004235140419770715
INFO:cooler._balance:variance is 0.0025833993358903105
INFO:cooler._balance:variance is 0.00157723652618271
INFO:cooler._balance:variance is 0.0009624021449137831
INFO:cooler._balance:variance is 0.0005875337199347604
INFO:cooler._balance:variance is 0.00035856252620910026
INFO:cooler._balance:variance is 0.00021888793616341097
INFO:cooler._balance:variance is 0.000133595970527638
INFO:cooler._balance:variance is 8.155260139918878e-05
INFO:cooler._balance:variance is 4.97772947523157e-05
INFO:cooler._balance:variance is 3.0385599078610322e-05
INFO:cooler._balance:variance is 1.8547000840122924e-05
INFO:cooler._balance:variance is 1.1321531604771048e-05
INFO:cooler._balance:variance is 6.910638875488891e-06
INFO:cooler.cli.balance:Balancing "/tmp/RtmpUkNrz9/VF0YKW/15c427129b3999_7833^mapped-R64-1-1^VF0YKW.mcool::/resolutions/20000"
INFO:cooler._balance:variance is 243.50977156721302
INFO:cooler._balance:variance is 39.63455242674973
INFO:cooler._balance:variance is 18.43348487903257
INFO:cooler._balance:variance is 8.158243312798238
INFO:cooler._balance:variance is 4.215009714103169
INFO:cooler._balance:variance is 2.026228443313313
INFO:cooler._balance:variance is 1.0300481087955187
INFO:cooler._balance:variance is 0.5066351662704277
INFO:cooler._balance:variance is 0.25516042846686926
INFO:cooler._balance:variance is 0.12659958893908396
INFO:cooler._balance:variance is 0.06348578258132688
INFO:cooler._balance:variance is 0.03161465202988035
INFO:cooler._balance:variance is 0.015821936460589915
INFO:cooler._balance:variance is 0.00789190395741773
INFO:cooler._balance:variance is 0.003945814786199358
INFO:cooler._balance:variance is 0.0019696434698123705
INFO:cooler._balance:variance is 0.0009843290355107171
INFO:cooler._balance:variance is 0.0004915269366296738
INFO:cooler._balance:variance is 0.00024558428857077375
INFO:cooler._balance:variance is 0.00012265436016565862
INFO:cooler._balance:variance is 6.127552065046489e-05
INFO:cooler._balance:variance is 3.060597623279647e-05
INFO:cooler._balance:variance is 1.5289235307762694e-05
INFO:cooler._balance:variance is 7.637005474505157e-06
INFO:cooler.cli.balance:Balancing "/tmp/RtmpUkNrz9/VF0YKW/15c427129b3999_7833^mapped-R64-1-1^VF0YKW.mcool::/resolutions/50000"
INFO:cooler._balance:variance is 1163.714018960069
INFO:cooler._balance:variance is 235.79203365314095
INFO:cooler._balance:variance is 103.65391473343112
INFO:cooler._balance:variance is 33.88073719595317
INFO:cooler._balance:variance is 13.33643965992213
INFO:cooler._balance:variance is 4.673490930623678
INFO:cooler._balance:variance is 1.7548299676861772
INFO:cooler._balance:variance is 0.6315783763258518
INFO:cooler._balance:variance is 0.2331645398122629
INFO:cooler._balance:variance is 0.08475881017366707
INFO:cooler._balance:variance is 0.031099583563265955
INFO:cooler._balance:variance is 0.011346770673083003
INFO:cooler._balance:variance is 0.00415404354830642
INFO:cooler._balance:variance is 0.0015176570185388883
INFO:cooler._balance:variance is 0.0005551596600344359
INFO:cooler._balance:variance is 0.00020292452981090212
INFO:cooler._balance:variance is 7.420775081017781e-05
INFO:cooler._balance:variance is 2.7129651103859776e-05
INFO:cooler._balance:variance is 9.919997723887306e-06
INFO:cooler.cli.balance:Balancing "/tmp/RtmpUkNrz9/VF0YKW/15c427129b3999_7833^mapped-R64-1-1^VF0YKW.mcool::/resolutions/100000"
INFO:cooler._balance:variance is 4309.562871388566
INFO:cooler._balance:variance is 794.872468216222
INFO:cooler._balance:variance is 292.76222191612635
INFO:cooler._balance:variance is 81.27479305375827
INFO:cooler._balance:variance is 26.507848013542795
INFO:cooler._balance:variance is 7.868398795237762
INFO:cooler._balance:variance is 2.459261184437617
INFO:cooler._balance:variance is 0.7466561351591031
INFO:cooler._balance:variance is 0.23034721741037542
INFO:cooler._balance:variance is 0.07043383704984996
INFO:cooler._balance:variance is 0.02164293354482896
INFO:cooler._balance:variance is 0.0066323309047237435
INFO:cooler._balance:variance is 0.002035504307599015
INFO:cooler._balance:variance is 0.0006241867314578815
INFO:cooler._balance:variance is 0.00019149534981264526
INFO:cooler._balance:variance is 5.873412327715124e-05
INFO:cooler._balance:variance is 1.80170824585338e-05
INFO:cooler._balance:variance is 5.526424726366979e-06
HiCool :: Tidying up everything for you...
HiCool :: .fastq to .mcool processing done!
HiCool :: Check ./HiCool/folder to find the generated files
HiCool :: Generating HiCool report. This might take a while.
HiCool :: Report generated and available @ /home/biocbuild/bbs-3.22-bioc/meat/HiCool.Rcheck/tests/testthat/HiCool/15c427129b3999_7833^mapped-R64-1-1^VF0YKW.html
HiCool :: All processing successfully achieved. Congrats!
see ?HiContactsData and browseVignettes('HiContactsData') for documentation
loading from cache
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
> 
> proc.time()
   user  system elapsed 
 78.242   5.499  73.000

Example timings

HiCool.Rcheck/HiCool-Ex.timings

nameusersystemelapsed
HiCReport23.992 1.88526.698
HiCool66.122 5.03060.396
getLoops5.9990.5416.707