| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-06-19 12:02 -0400 (Thu, 19 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4810 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" | 4548 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" | 4528 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 963/2309 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCool 1.9.0 (landing page) Jacques Serizay
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | ... NOT SUPPORTED ... | ||||||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the HiCool package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCool.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HiCool |
| Version: 1.9.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 HiCool |
| StartedAt: 2025-06-18 17:54:09 -0400 (Wed, 18 Jun 2025) |
| EndedAt: 2025-06-18 17:54:57 -0400 (Wed, 18 Jun 2025) |
| EllapsedTime: 48.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 HiCool
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* checking for file ‘HiCool/DESCRIPTION’ ... OK
* preparing ‘HiCool’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HiCool.Rmd’ using rmarkdown
Collecting pip
Using cached pip-24.0-py3-none-any.whl (2.1 MB)
Collecting wheel
Using cached wheel-0.42.0-py3-none-any.whl (65 kB)
Collecting setuptools
Using cached setuptools-68.0.0-py3-none-any.whl (804 kB)
Installing collected packages: pip, wheel, setuptools
Attempting uninstall: pip
Found existing installation: pip 20.1.1
Uninstalling pip-20.1.1:
Successfully uninstalled pip-20.1.1
Attempting uninstall: setuptools
Found existing installation: setuptools 47.1.0
Uninstalling setuptools-47.1.0:
Successfully uninstalled setuptools-47.1.0
Successfully installed pip-24.0 setuptools-68.0.0 wheel-0.42.0
ERROR: Could not find a version that satisfies the requirement bowtie2==2.5.0 (from versions: none)
ERROR: No matching distribution found for bowtie2==2.5.0
Quitting from HiCool.Rmd:70-80 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Error installing package(s): "'bowtie2==2.5.0'", "'samtools==1.16.1'", "'hicstuff==3.1.5'", "'chromosight==1.6.3'", "'cooler==0.9.1'"
---
Backtrace:
▆
1. └─HiCool::HiCool(...)
2. └─basilisk::basiliskStart(env_HiCool)
3. └─basilisk::obtainEnvironmentPath(env)
4. └─basilisk::setupBasiliskEnv(...)
5. └─reticulate::virtualenv_create(...)
6. └─reticulate:::pip_install(python, packages)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'HiCool.Rmd' failed with diagnostics:
Error installing package(s): "'bowtie2==2.5.0'", "'samtools==1.16.1'", "'hicstuff==3.1.5'", "'chromosight==1.6.3'", "'cooler==0.9.1'"
--- failed re-building ‘HiCool.Rmd’
SUMMARY: processing the following file failed:
‘HiCool.Rmd’
Error: Vignette re-building failed.
Execution halted