Thomas Girke
| Snapshot Date: 2025-08-08 13:45 -0400 (Fri, 08 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/ChemmineOB |
| git_branch: devel |
| git_last_commit: 545334c |
| git_last_commit_date: 2025-07-31 14:09:02 -0400 (Thu, 31 Jul 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-09 12:06 -0400 (Sat, 09 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 328/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ChemmineOB 1.47.5 (landing page) Thomas Girke
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the ChemmineOB package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChemmineOB.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ChemmineOB |
| Version: 1.47.5 |
| Command: F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL ChemmineOB |
| StartedAt: 2025-08-08 15:34:32 -0400 (Fri, 08 Aug 2025) |
| EndedAt: 2025-08-08 15:34:41 -0400 (Fri, 08 Aug 2025) |
| EllapsedTime: 8.5 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
###
### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL ChemmineOB
###
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* installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library'
* installing *source* package 'ChemmineOB' ...
** this is package 'ChemmineOB' version '1.47.5'
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.22-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -Ic:/openbabel3/src/x64/include -IC:/openbabel3/deps/eigen-3.4.0 -DHAVE_EIGEN -DHAVE_ISFINITE -Wno-misleading-indentation -fPIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp:1569:10: fatal error: openbabel/obutil.h: No such file or directory
1569 | #include <openbabel/obutil.h>
| ^~~~~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [F:/biocbuild/bbs-3.22-bioc/R/etc/x64/Makeconf:296: ChemmineOB.o] Error 1
ERROR: compilation failed for package 'ChemmineOB'
* removing 'F:/biocbuild/bbs-3.22-bioc/R/library/ChemmineOB'