Multiple platform build/check report for BioC 3.22 - BUILD results for ChemmineOB on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4818
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4553
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4595
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4537
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ChemmineOB on palomino8

To the developers/maintainers of the ChemmineOB package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChemmineOB.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ChemmineOB

Version: 1.47.5

Command: chmod a+r ChemmineOB -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ChemmineOB

StartedAt: 2025-08-08 17:58:30 -0400 (Fri, 08 Aug 2025)

EndedAt: 2025-08-08 17:58:36 -0400 (Fri, 08 Aug 2025)

EllapsedTime: 6.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r ChemmineOB -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ChemmineOB
###
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* checking for file 'ChemmineOB/DESCRIPTION' ... OK
* preparing 'ChemmineOB':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'ChemmineOB' ...
** this is package 'ChemmineOB' version '1.47.5'
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/Rcpp/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -Ic:/openbabel3/src/x64/include -IC:/openbabel3/deps/eigen-3.4.0  -DHAVE_EIGEN -DHAVE_ISFINITE -Wno-misleading-indentation -fPIC   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp:1569:10: fatal error: openbabel/obutil.h: No such file or directory
 1569 | #include <openbabel/obutil.h>
      |          ^~~~~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [F:/biocbuild/bbs-3.22-bioc/R/etc/x64/Makeconf:296: ChemmineOB.o] Error 1
ERROR: compilation failed for package 'ChemmineOB'
* removing 'F:/biocbuild/bbs-3.22-bioc/tmpdir/Rtmpyuv2JK/Rinst173c47a0ffb3/ChemmineOB'
      -----------------------------------
ERROR: package installation failed