Carles Hernandez-Ferrer
| Snapshot Date: 2019-04-07 17:01:41 -0400 (Sun, 07 Apr 2019) |
| URL: https://git.bioconductor.org/packages/CTDquerier |
| Branch: master |
| Last Commit: ce91dc4 |
| Last Changed Date: 2018-10-30 11:54:38 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-08 11:45:01 -0400 (Mon, 08 Apr 2019).
| Package 366/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CTDquerier 1.3.0 Carles Hernandez-Ferrer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | TIMEOUT | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | TIMEOUT | skipped | skipped | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: CTDquerier |
| Version: 1.3.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CTDquerier.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings CTDquerier_1.3.0.tar.gz |
| StartedAt: 2019-04-08 02:25:52 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 02:30:09 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 256.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: CTDquerier.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CTDquerier.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings CTDquerier_1.3.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/CTDquerier.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CTDquerier/DESCRIPTION' ... OK
* this is package 'CTDquerier' version '1.3.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CTDquerier' can be installed ... OK
* checking installed package size ... NOTE
installed size is 8.3Mb
sub-directories of 1Mb or more:
data 3.8Mb
extdata 4.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
Note: found 161 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
query_ctd_gene 12.23 0.95 18.97
load_ctd_gene 9.60 0.39 9.98
query_ctd_chem 9.72 0.19 20.44
query_ctd_dise 0.95 0.03 27.89
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
load_ctd_gene 13.21 0.21 13.42
query_ctd_gene 11.45 0.28 17.22
query_ctd_chem 9.69 0.17 21.48
load_ctd_chem 4.90 0.16 5.06
query_ctd_dise 0.99 0.00 25.43
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/CTDquerier.Rcheck/00check.log'
for details.
CTDquerier.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CTDquerier_1.3.0.tar.gz && rm -rf CTDquerier.buildbin-libdir && mkdir CTDquerier.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CTDquerier.buildbin-libdir CTDquerier_1.3.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CTDquerier_1.3.0.zip && rm CTDquerier_1.3.0.tar.gz CTDquerier_1.3.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3603k 100 3603k 0 0 18.4M 0 --:--:-- --:--:-- --:--:-- 19.2M
install for i386
* installing *source* package 'CTDquerier' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CTDquerier'
finding HTML links ... done
CTDdata-class html
CTDquerier html
download_ctd_chem html
download_ctd_dise html
download_ctd_genes html
enrich-methods html
gala html
get_table-methods html
get_terms-methods html
leaf_plot html
load_ctd_chem html
load_ctd_dise html
load_ctd_gene html
query_ctd_chem html
query_ctd_dise html
query_ctd_gene html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CTDquerier' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CTDquerier' as CTDquerier_1.3.0.zip
* DONE (CTDquerier)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'CTDquerier' successfully unpacked and MD5 sums checked
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CTDquerier.Rcheck/examples_i386/CTDquerier-Ex.timings
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CTDquerier.Rcheck/examples_x64/CTDquerier-Ex.timings
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