Package: TurboNorm

Version: 1.28.0

Command: rm -rf TurboNorm.buildbin-libdir && mkdir TurboNorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TurboNorm_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TurboNorm.buildbin-libdir

StartedAt: 2018-10-17 02:18:08 -0400 (Wed, 17 Oct 2018)

EndedAt: 2018-10-17 02:19:00 -0400 (Wed, 17 Oct 2018)

EllapsedTime: 52.6 seconds

RetCode: 0

Status:  OK

PackageFile: TurboNorm_1.28.0.tgz

PackageFileSize: 723.2 KiB

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### Running command:
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###   rm -rf TurboNorm.buildbin-libdir && mkdir TurboNorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TurboNorm_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TurboNorm.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TurboNorm.buildbin-libdir TurboNorm_1.28.0.tar.gz'
>>>>>>> 

* installing *source* package ‘TurboNorm’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rinit.c -o Rinit.o
Rinit.c:11:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
  NULL
  ^˜˜˜
  {   }
/usr/local/clang4/bin/../lib/clang/4.0.0/include/stddef.h:105:16: note: expanded from macro 'NULL'
#  define NULL ((void*)0)
               ^˜˜˜˜˜˜˜˜˜
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c binners.c -o binners.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o TurboNorm.so Rinit.o binners.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.7-bioc/meat/TurboNorm.buildbin-libdir/TurboNorm/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (TurboNorm)


>>>>>>> 
>>>>>>> FIXING LINKS FOR TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "TurboNorm.buildbin-libdir/TurboNorm/libs//TurboNorm.so"