Daryanaz Dargahi
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/Prize |
| Branch: RELEASE_3_7 |
| Last Commit: ef6dcc3 |
| Last Changed Date: 2018-04-30 10:35:37 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:27:47 -0400 (Wed, 17 Oct 2018).
| Package 1125/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Prize 1.10.0 Daryanaz Dargahi
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: Prize |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:Prize.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings Prize_1.10.0.tar.gz |
| StartedAt: 2018-10-16 02:49:15 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 02:50:27 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 71.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Prize.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:Prize.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings Prize_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/Prize.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Prize/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Prize’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Prize’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
Prize-package 5.564 0.016 5.643
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
Prize.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL Prize ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘Prize’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Prize)
Prize.Rcheck/tests/runTests.Rout
R version 3.5.1 Patched (2018-07-12 r74967) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("Prize")
Loading required package: shape
Reading individual judgements.
Aggregating individual judgements with geometric mean (AIJ).
Computing group consistency ratio (GCR).
Computing consensus index (CI).
Reading individual judgements.
Aggregating individual priorities with arithmetic mean (AIP).
0 Prioritization_of_DE_genes is processed.
1 Tumor_expression is processed.
2 Normal_expression is processed.
3 Frequency is processed.
4 Epitopes is processed.
4.1 Number_of_epitopes is processed.
4.2 Size_of_epitopes is processed.
RUNIT TEST PROTOCOL -- Tue Oct 16 02:50:24 2018
***********************************************
Number of test functions: 5
Number of errors: 0
Number of failures: 0
1 Test Suite :
Prize RUnit Tests - 5 test functions, 0 errors, 0 failures
Number of test functions: 5
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
7.072 0.044 7.133
Prize.Rcheck/Prize-Ex.timings
| name | user | system | elapsed | |
| AIJ | 1.560 | 0.012 | 1.584 | |
| AIP | 1.04 | 0.00 | 1.04 | |
| CI | 1.564 | 0.000 | 1.566 | |
| GCR | 1.548 | 0.000 | 1.551 | |
| ICR | 2.58 | 0.00 | 2.58 | |
| IP | 2.648 | 0.000 | 2.648 | |
| Prize-package | 5.564 | 0.016 | 5.643 | |
| RM | 0.264 | 0.000 | 0.265 | |
| ahmatrix | 0.000 | 0.000 | 0.001 | |
| ahp | 0.268 | 0.000 | 0.269 | |
| ahp_matrix | 0.000 | 0.000 | 0.002 | |
| ahp_plot | 2.120 | 0.000 | 2.124 | |
| ahp_weights | 2.084 | 0.004 | 2.087 | |
| ahplot | 0.028 | 0.000 | 0.027 | |
| crplot | 0.248 | 0.000 | 0.246 | |
| dplot | 0.14 | 0.00 | 0.14 | |
| gaggregate | 3.252 | 0.000 | 3.255 | |
| pipeline | 2.172 | 0.000 | 2.177 | |
| rainbow_plot | 2.004 | 0.000 | 2.003 | |
| rainbowplot | 0.256 | 0.000 | 0.258 | |
| rating | 0.548 | 0.000 | 0.551 | |
| saaty_inconsistency | 2.420 | 0.000 | 2.426 | |
| simulation | 2.120 | 0.004 | 2.128 | |
| weight | 0.524 | 0.000 | 0.521 | |
| weight_plot | 2.068 | 0.000 | 2.071 | |
| wplot | 0.368 | 0.000 | 0.369 | |