Holger Froehlich
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/GOSim |
| Branch: RELEASE_3_7 |
| Last Commit: ab49c54 |
| Last Changed Date: 2018-04-30 10:35:31 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:37:42 -0400 (Wed, 17 Oct 2018).
| Package 634/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GOSim 1.18.0 Holger Froehlich
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GOSim |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GOSim_1.18.0.tar.gz && rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOSim.buildbin-libdir GOSim_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GOSim_1.18.0.zip && rm GOSim_1.18.0.tar.gz GOSim_1.18.0.zip |
| StartedAt: 2018-10-16 20:20:35 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:21:41 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 65.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GOSim_1.18.0.tar.gz && rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOSim.buildbin-libdir GOSim_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GOSim_1.18.0.zip && rm GOSim_1.18.0.tar.gz GOSim_1.18.0.zip
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install for i386
* installing *source* package 'GOSim' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" `C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"` -O2 -Wall -mtune=generic -c OAWrapper.cpp -o OAWrapper.o
Loading required package: Rcpp
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c hungarian2.c -o hungarian2.o
Loading required package: Rcpp
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GOSim.dll tmp.def OAWrapper.o hungarian2.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
Loading required package: Rcpp
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GOSim.buildbin-libdir/GOSim/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GOSim'
finding HTML links ... done
GOenrichment html
IC html
calc.diffusion.kernel html
calcICs html
evaluateClustering html
filterGO html
getAncestors html
getChildren html
getDisjCommAnc html
getGOGraph html
getGOInfo html
getGeneFeatures html
getGeneFeaturesPrototypes html
getGeneSim html
getGeneSimPrototypes html
getMinimumSubsumer html
getOffsprings html
getParents html
getTermSim html
internal html
selectPrototypes html
setEnrichmentFactors html
setEvidenceLevel html
setOntology html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GOSim' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" `C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"` -O2 -Wall -mtune=generic -c OAWrapper.cpp -o OAWrapper.o
Loading required package: Rcpp
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c hungarian2.c -o hungarian2.o
Loading required package: Rcpp
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GOSim.dll tmp.def OAWrapper.o hungarian2.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
Loading required package: Rcpp
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GOSim.buildbin-libdir/GOSim/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GOSim' as GOSim_1.18.0.zip
* DONE (GOSim)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'GOSim' successfully unpacked and MD5 sums checked
In R CMD INSTALL