Multiple platform build/check report for BioC 3.21 - BUILD results for dar on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4833
merida1	macOS 12.7.6 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4614
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4555
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4586
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for dar on kunpeng2

To the developers/maintainers of the dar package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dar.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: dar

Version: 1.4.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data dar

StartedAt: 2025-10-14 00:05:56 -0000 (Tue, 14 Oct 2025)

EndedAt: 2025-10-14 00:11:40 -0000 (Tue, 14 Oct 2025)

EllapsedTime: 344.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data dar
###
##############################################################################
##############################################################################


* checking for file ‘dar/DESCRIPTION’ ... OK
* preparing ‘dar’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘article.Rmd’ using rmarkdown

Quitting from article.Rmd:218-222 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `pm[[2]]`:
! subscript out of bounds
---
Backtrace:
     ▆
  1. ├─dar::corr_heatmap(da_results, font_size = 10)
  2. ├─dar::corr_heatmap(da_results, font_size = 10)
  3. │ └─overlap_df(rec, steps = steps, type = type) %>% ...
  4. ├─heatmaply::heatmaply_cor(...)
  5. │ ├─heatmaply::heatmaply(x, limits = limits, colors = colors, ...)
  6. │ └─heatmaply:::heatmaply.default(...)
  7. │   ├─heatmaply::heatmaply(...)
  8. │   └─heatmaply:::heatmaply.heatmapr(...)
  9. │     ├─... %>% layout(showlegend = FALSE)
 10. │     ├─plotly::ggplotly(...)
 11. │     └─plotly:::ggplotly.ggplot(...)
 12. │       └─plotly::gg2list(...)
 13. └─plotly::layout(., showlegend = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'article.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘article.Rmd’

--- re-building ‘bioinformatics_vignette.Rmd’ using rmarkdown

Quitting from bioinformatics_vignette.Rmd:145-148 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `pm[[2]]`:
! subscript out of bounds
---
Backtrace:
     ▆
  1. ├─dar::corr_heatmap(da_results, font_size = 10)
  2. ├─dar::corr_heatmap(da_results, font_size = 10)
  3. │ └─overlap_df(rec, steps = steps, type = type) %>% ...
  4. ├─heatmaply::heatmaply_cor(...)
  5. │ ├─heatmaply::heatmaply(x, limits = limits, colors = colors, ...)
  6. │ └─heatmaply:::heatmaply.default(...)
  7. │   ├─heatmaply::heatmaply(...)
  8. │   └─heatmaply:::heatmaply.heatmapr(...)
  9. │     ├─... %>% layout(showlegend = FALSE)
 10. │     ├─plotly::ggplotly(...)
 11. │     └─plotly:::ggplotly.ggplot(...)
 12. │       └─plotly::gg2list(...)
 13. └─plotly::layout(., showlegend = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'bioinformatics_vignette.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘bioinformatics_vignette.Rmd’

--- re-building ‘dar.Rmd’ using rmarkdown
--- finished re-building ‘dar.Rmd’

--- re-building ‘data_import.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Data Import", and the latter is "Converting Common Data Formats to Phyloseq and TreeSummarizedExperiment". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘data_import.Rmd’

--- re-building ‘filtering_subsetting.Rmd’ using rmarkdown
--- finished re-building ‘filtering_subsetting.Rmd’

--- re-building ‘import_export_recipes.Rmd’ using rmarkdown
--- finished re-building ‘import_export_recipes.Rmd’

SUMMARY: processing the following files failed:
  ‘article.Rmd’ ‘bioinformatics_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted