Mustafa Erhan Ozer
| Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: b5eba63 |
| git_last_commit_date: 2024-04-30 11:49:19 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-16 11:41 -0400 (Tue, 16 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2056/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.5.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.5.0 |
| Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.5.0.tar.gz |
| StartedAt: 2024-07-16 04:53:52 -0400 (Tue, 16 Jul 2024) |
| EndedAt: 2024-07-16 04:58:10 -0400 (Tue, 16 Jul 2024) |
| EllapsedTime: 258.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.5.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.5.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading `shiny::dataTableOutput()` is deprecated as of shiny 1.8.1. Please use `DT::DTOutput()` instead. Since you have a suitable version of DT (>= v0.32.1), shiny::dataTableOutput() will automatically use DT::DTOutput() under-the-hood. If this happens to break your app, set `options(shiny.legacy.datatable = TRUE)` to get the legacy datatable implementation (or `FALSE` to squelch this message). See <https://rstudio.github.io/DT/shiny.html> for more information. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 340024,6354,10195,55670,4795,1559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5214,90624,29126,2834,8659,89874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6301,3600,5160,3570,55600,25805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5687,5770,570,1374,3117,5507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23556,55340,6833,3339,10272,7137
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160428,3098,10580,2660,5837,2395
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50615,2998,28234,846,3600,6531
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,2159,1347,1843,5771,9997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1268,5592,51141,353500,5919,1513
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4615,56244,4000,358,8835,2110
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91452,1728,4023,2057,5428,347411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5787,407024,4758,7097,5288,8784
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 183,121268,1051,338821,8431,2006
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5291,4288,5330,2235,4580,51293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7253,4891,54210,4586,5327,158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3082,156,3077,6256,1409,1950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6517,718,5741,64116,4217,93587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22933,5188,4846,3791,54931,1520
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5122,253827,83737,2694,6928,593
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 572,5449,4891,2936,10019,5727
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3930,50615,1149,84889,2538,6357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9370,5406,285362,1444,5096,2949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7226,6343,9630,886,5321,10666
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2588,3115,6392,2488,5290,148738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11035,51083,51478,4000,3073,823
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9575,635,1028,5629,6564,7852
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29851,859,2694,4137,3625,1363
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5654,3664,440503,1956,4088,4489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64432,3764,8764,2793,55750,83884
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7021,27010,1393,599,3074,477
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11132,406903,6927,186,5096,859
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7133,2660,3155,23600,1339,4719
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4891,4358,6280,92667,1636,6301
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 270,1356,191,9518,350,728294
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 66036,3159,8813,2786,6721,9437
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 875,203859,811,10874,60412,6341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54822,9498,6721,63874,1493,10522
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84277,4552,2559,11019,7412,5176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91452,712,10686,265,2280,283459
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1491,116085,728,4153,2308,7391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5820,51094,29929,199,497231,10891
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55863,7538,4694,8218,23590,643394
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6476,1813,1312,79572,388962,1393
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79783,101180976,2760,943,2689,2645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4313,4522,56606,4758,7480,1175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23175,7248,205327,1584,23479,4880
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 199,4277,6566,841,133,4151
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5228,10229,10891,1175,2166,100507436
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4276,57554,2147,6934,467,2517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1644,3725,2542,65080,177,56052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5914,2746,9311,160287,6517,9180
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1812,4723,130120,55024,6928,4089
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 599,90865,80724,9759,23516,3456
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1757,60412,2834,388962,1906,3106
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79689,54896,4060,6722,7040,759
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3553,6770,8202,3373,2932,376497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5265,4256,1435,7030,1270,8398
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4790,25813,2788,2475,582,57107
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3553,1584,10599,4878,155,3082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 344905,3557,55937,644974,10560,9965
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9807,627,4973,2581,1352,4988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 152926,1965,1147,8784,2908,2820
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1135,6906,55863,3803,83985,6447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 549,51106,432369,5230,5891,6514
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1382,210,2998,4899,409,4695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3816,1558,1234,79731,5139,407008
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 650,4128,10857,2587,3329,509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 332,1347,10020,2571,3117,632
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9056,316,5662,123283,4720,567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3717,56458,7046,131118,1812,665
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1559,100529063,6523,7424,2740,3145
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8517,325,59340,9969,160287,367
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3250,7049,9927,5444,5820,6530
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1351,169026,581,5162,84706,266
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338557,9370,2158,2710,6616,137682
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54802,594,8829,2539,407006,3598
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8876,65080,3054,5092,5498,5515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9575,109,551,3778,9369,130120
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55699,574447,7133,191,3308,4521
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
43.60 2.42 46.07
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.49 | 0.07 | 0.55 | |