Mustafa Erhan Ozer
| Snapshot Date: 2024-11-08 13:40 -0500 (Fri, 08 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-09 21:31 -0500 (Sat, 09 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4505 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4506 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4538 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4486 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2024-11-09 14:44:44 -0500 (Sat, 09 Nov 2024) |
| EndedAt: 2024-11-09 14:50:14 -0500 (Sat, 09 Nov 2024) |
| EllapsedTime: 330.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 2395,55788,3117,3953,7409,9498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22820,5313,7248,5515,1356,574447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79949,364,53335,4853,7515,91949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7037,50943,1353,9560,8243,2645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22796,54549,1442,728,4700,10724
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200539,54476,7841,9868,5160,686
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 345,56848,10157,3565,1621,26119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160428,55818,3717,57107,8462,25839
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3113,6464,3032,2745,9692,55630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10019,1355,231,6928,875,2752
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 155,54577,2587,5261,79585,2697
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 24147,27429,859,440138,4982,142
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 118,2305,9572,5213,3990,627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54210,6514,25828,344,100529063,116150
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10874,3060,219,5950,821,1734
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,344905,26003,123283,5409,197
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57817,64601,200810,1738,178,1028
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10165,486,387787,5313,166785,7040
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6888,2157,38,8945,2729,10845
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3554,3586,22978,79587,4153,26175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4598,3569,1201,90624,79158,2548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7407,5799,348,255308,54575,2100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5860,940,3383,9021,121268,54331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51649,3060,2517,5741,567,132158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10560,1581,2593,5365,84833,3939
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57215,3673,57620,10116,4118,29947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1716,3557,1889,2524,3708,5962
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3082,6576,3562,5824,79572,8517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 150,177,94235,3939,9131,2702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22797,79934,3081,5590,3483,3066
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2108,4247,2952,118,11019,54982
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387082,84902,376497,9479,4337,7372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1595,5744,154,406934,5654,3557
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 376497,1645,406906,563,100506742,6248
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84701,89874,54539,7841,8648,5792
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11136,199,4925,5105,4915,653
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4968,3783,1401,3813,5562,175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79572,1608,821,3458,514,627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6811,94235,5052,53345,5288,5277
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285848,1555,10599,570,11093,652
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5702,84572,344905,8660,1815,8639
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7054,5860,3899,6888,53905,57215
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406906,55788,100529063,6387,92483,51206
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53905,5830,1201,5373,2328,4069
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1798,56848,7942,5277,1281,27125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 729230,3795,3565,6548,54106,3065
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 231,3813,114548,23556,2303,140803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 122961,84902,10195,3489,4828,2542
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 617,55768,885,6868,132158,7355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 857,5836,336,4654,7054,5068
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3483,549,125170,1559,5563,445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6550,7376,268,2592,6582,81689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51422,5211,23600,1869,84239,2820
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4153,84833,1906,132001,347,5406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 293,25821,56923,1601,406938,87178
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2334,56652,79572,51099,10466,3630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3481,57620,1571,374291,1646,57176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91949,4012,842,3481,5175,1869
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10616,388,5213,2739,11132,388372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6403,23129,10423,81704,10842,2108
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9607,7057,10457,594,5255,4878
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1950,3158,1585,80222,6609,551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56729,7097,7319,4015,2646,80270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5581,3938,3034,3954,65985,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54915,4889,5295,653509,38,5644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406913,7292,10537,10250,10423,5295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7048,407009,5507,440138,5188,7099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3783,51128,57818,8651,1803,2937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2110,7412,4860,590,18,8431
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6897,3162,1675,8648,54331,2572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2643,411,8567,5195,1353,55037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3423,7076,1843,90624,1859,1489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3991,51548,1589,9056,1186,116519
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3710,326625,5306,80224,7325,84889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5327,4828,28958,8675,6565,2878
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4126,9054,32,5538,30061,10013
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 152078,83854,50943,2310,462,10226
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51458,406906,3709,60528,338,64131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3934,2517,3783,55343,2030,37
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6550,836,7388,6811,8803,23129
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 34,79068,406934,2597,283120,7097
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51085,5644,3645,492,57215,6236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5193,5329,65080,26517,54809,1584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1543,6890,6925,5162,2876,80207
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5345,3558,23274,284958,91949,3339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388753,85476,2119,2203,6492,5730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4233,665,3060,7052,2113,3483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 283120,1230,4925,388743,6721,1371
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1270,79949,38,3383,434,27247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8879,87178,79572,7840,6248,539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23304,123099,728294,5270,153642,4724
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3988,1436,9414,2542,5293,1337
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25821,4089,348,2006,53905,65985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285,55343,4247,2673,57085,5330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100,3156,5373,8818,55005,2006
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6517,5274,50506,3417,650,7124
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3174,18,23304,51611,5213,5080
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4726,28976,26003,8660,3382,57511
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6517,4854,811,388962,55343,239
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3938,3312,51206,6536,5365,4976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 728294,7084,4285,92667,5139,2948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10466,83548,3692,587,55750,4627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6522,5501,4256,2720,3606,8202
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4089,23654,79133,7252,2542,10382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2588,6198,9560,8604,23038,2581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50507,43,51441,2118,572,8651
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1491,627,2689,868,388753,821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2876,26503,285362,819,4338,4125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3486,6374,4160,359,51316,1718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7098,54982,91574,183,406922,23369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 134,7325,5184,55670,8560,2524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,1347,34,3569,353,1585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84833,3174,4312,1027,3710,51738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10013,1956,8243,5350,5515,5629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2695,435,6513,5860,1718,5230
--> return NULL...
2024-11-09 14:50:11.107 R[3455:7782493] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
22.588 0.360 22.977
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.289 | 0.012 | 3.418 | |