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This page was generated on 2023-06-01 18:17:19 -0400 (Thu, 01 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
xps15Linux (Ubuntu 23.04)x86_644.3.0 Patched (2023-05-23 r84466) -- "Already Tomorrow" 544
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INSTALL results for DESeq on xps15


To the developers/maintainers of the DESeq package:
Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 28/91HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq 1.43.0  (landing page)
Simon Anders
Snapshot Date: 2023-06-01 15:10:15 -0400 (Thu, 01 Jun 2023)
git_url: https://git.bioconductor.org/packages/DESeq
git_branch: devel
git_last_commit: ace59de
git_last_commit_date: 2020-10-27 10:37:14 -0400 (Tue, 27 Oct 2020)
xps15Linux (Ubuntu 23.04) / x86_64  OK    ERROR  skipped

Summary

Package: DESeq
Version: 1.43.0
Command: /home/hpages/bbs-3.18-bioc/R/bin/R CMD INSTALL DESeq
StartedAt: 2023-06-01 12:24:53 -0700 (Thu, 01 Jun 2023)
EndedAt: 2023-06-01 12:25:18 -0700 (Thu, 01 Jun 2023)
EllapsedTime: 25.0 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/hpages/bbs-3.18-bioc/R/bin/R CMD INSTALL DESeq
###
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* installing to library ‘/home/hpages/bbs-3.18-bioc-testing/Rlibs’
* installing *source* package ‘DESeq’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 12.2.0-17ubuntu1) 12.2.0’
gcc -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c pval.c -o pval.o
pval.c: In function ‘add_from_both_sides’:
pval.c:26:11: warning: unused variable ‘esttotalperlength’ [-Wunused-variable]
   26 |    double esttotalperlength = total/2;
      |           ^~~~~~~~~~~~~~~~~
gcc -shared -L/usr/local/lib -o DESeq.so pval.o
installing to /home/hpages/bbs-3.18-bioc-testing/Rlibs/00LOCK-DESeq/00new/DESeq/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
** testing if installed package keeps a record of temporary installation path
* DONE (DESeq)