Back to First build/check report with an "external build node"

This page was generated on 2023-06-01 18:17:19 -0400 (Thu, 01 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
xps15Linux (Ubuntu 23.04)x86_644.3.0 Patched (2023-05-23 r84466) -- "Already Tomorrow" 544
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BUILD results for DESeq on xps15


To the developers/maintainers of the DESeq package:
Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 28/91HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq 1.43.0  (landing page)
Simon Anders
Snapshot Date: 2023-06-01 15:10:15 -0400 (Thu, 01 Jun 2023)
git_url: https://git.bioconductor.org/packages/DESeq
git_branch: devel
git_last_commit: ace59de
git_last_commit_date: 2020-10-27 10:37:14 -0400 (Tue, 27 Oct 2020)
xps15Linux (Ubuntu 23.04) / x86_64  OK    ERROR  skipped

Summary

Package: DESeq
Version: 1.43.0
Command: /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DESeq
StartedAt: 2023-06-01 12:39:23 -0700 (Thu, 01 Jun 2023)
EndedAt: 2023-06-01 12:39:47 -0700 (Thu, 01 Jun 2023)
EllapsedTime: 24.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DESeq
###
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* checking for file ‘DESeq/DESCRIPTION’ ... OK
* preparing ‘DESeq’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DESeq.Rnw’ using Sweave
Warning in file(file, "rt") :
  file("") only supports open = "w+" and open = "w+b": using the former

Error: processing vignette 'DESeq.Rnw' failed with diagnostics:
 chunk 3 (label = readTable) 
Error in read.table(datafile, header = TRUE, row.names = 1) : 
  no lines available in input

--- failed re-building ‘DESeq.Rnw’

SUMMARY: processing the following file failed:
  ‘DESeq.Rnw’

Error: Vignette re-building failed.
Execution halted