| Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-04-17 11:36:40 -0400 (Wed, 17 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4414 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4437 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 480/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cyanoFilter 1.10.0 (landing page) Oluwafemi Olusoji
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cyanoFilter |
| Version: 1.10.0 |
| Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:cyanoFilter.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings cyanoFilter_1.10.0.tar.gz |
| StartedAt: 2024-04-15 23:49:44 -0400 (Mon, 15 Apr 2024) |
| EndedAt: 2024-04-15 23:51:35 -0400 (Mon, 15 Apr 2024) |
| EllapsedTime: 111.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cyanoFilter.Rcheck |
| Warnings: 0 |
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### Running command:
###
### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:cyanoFilter.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings cyanoFilter_1.10.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/cyanoFilter.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 12.3.0
GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'cyanoFilter/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'cyanoFilter' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cyanoFilter' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
gateFunc 12.46 0.14 12.74
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library' * installing *source* package 'cyanoFilter' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
| name | user | system | elapsed | |
| MarginEvents | 1.12 | 0.07 | 1.28 | |
| PhytoFilter | 0.68 | 0.09 | 0.89 | |
| PhytopFilter | 0.95 | 0.09 | 1.22 | |
| accTest | 0.58 | 0.05 | 0.72 | |
| accuracy | 0.46 | 0.03 | 0.48 | |
| cellmargin | 0.42 | 0.05 | 0.55 | |
| clusterExtract | 1.05 | 0.08 | 1.26 | |
| clusterExtractp | 1.28 | 0.08 | 1.50 | |
| debrisNc | 0.50 | 0.01 | 0.61 | |
| fullFlowframe-MarginEvents-method | 0.46 | 0.09 | 0.62 | |
| fullFlowframe-PhytopFilter-method | 0.62 | 0.15 | 0.89 | |
| fullFlowframe | 0.49 | 0.04 | 0.61 | |
| gateFunc | 12.46 | 0.14 | 12.74 | |
| ggpairsDens | 3.39 | 0.19 | 3.64 | |
| ggplotDens | 0.79 | 0.03 | 0.87 | |
| ggplotDens2 | 1.06 | 0.11 | 1.30 | |
| goodfcs | 0.05 | 0.00 | 0.04 | |
| is.DebrisFilter | 0 | 0 | 0 | |
| is.MarginEvents | 0 | 0 | 0 | |
| is.PhytopFilter | 0 | 0 | 0 | |
| is.flowFrame | 0 | 0 | 0 | |
| is.flowSet | 0 | 0 | 0 | |
| lnTrans | 0.33 | 0.00 | 0.37 | |
| newFlowframe | 0.28 | 0.03 | 0.38 | |
| nona | 0.14 | 0.00 | 0.16 | |
| noneg | 0.19 | 0.03 | 0.25 | |
| oneDgate | 0.31 | 0.10 | 0.45 | |
| pairsPlot | 1.84 | 0.06 | 1.96 | |
| pigmentGate | 0.35 | 0.03 | 0.45 | |
| reducedFlowframe-MarginEvents-method | 0.65 | 0.11 | 0.84 | |
| reducedFlowframe | 0.46 | 0.05 | 0.58 | |
| retain | 0.01 | 0.00 | 0.02 | |
| rowNumbers | 0.32 | 0.06 | 0.42 | |
| summaries-DebrisFilter-method | 0.34 | 0.03 | 0.45 | |
| summaries-MarginEvents-method | 0.48 | 0.02 | 0.57 | |
| summaries-PhytopFilter-method | 0.91 | 0.06 | 1.07 | |
| summaries | 0.39 | 0.06 | 0.53 | |