| Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-11-02 11:41:01 -0400 (Thu, 02 Nov 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1439/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OLIN 1.80.0 (landing page) Matthias Futschik
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the OLIN package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OLIN.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: OLIN |
| Version: 1.80.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:OLIN.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings OLIN_1.80.0.tar.gz |
| StartedAt: 2023-11-02 12:45:39 -0000 (Thu, 02 Nov 2023) |
| EndedAt: 2023-11-02 12:46:38 -0000 (Thu, 02 Nov 2023) |
| EllapsedTime: 59.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OLIN.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:OLIN.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings OLIN_1.80.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/OLIN.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OLIN/DESCRIPTION’ ... OK
* this is package ‘OLIN’ version ‘1.80.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OLIN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
‘marray’ ‘methods’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘convert’ in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: ‘locfit’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ino: no visible global function definition for ‘locfit’
ino: no visible global function definition for ‘predict’
lin: no visible global function definition for ‘locfit’
lin: no visible global function definition for ‘predict’
oin: no visible global function definition for ‘gcvplot’
oin: no visible global function definition for ‘locfit’
oin: no visible global function definition for ‘predict’
olin: no visible global function definition for ‘gcv’
olin: no visible global function definition for ‘locfit’
olin: no visible global function definition for ‘predict’
Undefined global functions or variables:
gcv gcvplot locfit predict
Consider adding
importFrom("stats", "predict")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
olin 22.044 0.032 22.113
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.18-bioc/meat/OLIN.Rcheck/00check.log’
for details.
OLIN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL OLIN ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’ * installing *source* package ‘OLIN’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OLIN)
OLIN.Rcheck/OLIN-Ex.timings
| name | user | system | elapsed | |
| anovaint | 0.187 | 0.008 | 0.197 | |
| anovapin | 0.077 | 0.004 | 0.081 | |
| anovaplate | 0.082 | 0.004 | 0.086 | |
| anovaspatial | 0.186 | 0.024 | 0.210 | |
| backgroundCorrect2 | 0.563 | 0.028 | 0.596 | |
| bas | 0.201 | 0.004 | 0.206 | |
| colorbar.mxy | 0.038 | 0.012 | 0.050 | |
| fdr.int | 0 | 0 | 0 | |
| fdr.int2 | 0 | 0 | 0 | |
| fdr.spatial | 0.000 | 0.000 | 0.001 | |
| fdr.spatial2 | 0 | 0 | 0 | |
| fgbg.visu | 0.107 | 0.000 | 0.107 | |
| ino | 0.288 | 0.032 | 0.321 | |
| lin | 0.748 | 0.008 | 0.758 | |
| m2v | 0.059 | 0.000 | 0.058 | |
| ma.matrix | 0.286 | 0.000 | 0.286 | |
| ma.vector | 0.426 | 0.000 | 0.427 | |
| mxy.abs.plot | 0.215 | 0.000 | 0.216 | |
| mxy.plot | 0.069 | 0.000 | 0.069 | |
| mxy2.plot | 0.047 | 0.008 | 0.055 | |
| oin | 1.005 | 0.004 | 1.011 | |
| olin | 22.044 | 0.032 | 22.113 | |
| p.int | 0 | 0 | 0 | |
| p.int2 | 0 | 0 | 0 | |
| p.spatial | 0 | 0 | 0 | |
| p.spatial2 | 0.000 | 0.001 | 0.000 | |
| sig.mask | 0 | 0 | 0 | |
| sigint.plot | 0 | 0 | 0 | |
| sigint.plot2 | 0 | 0 | 0 | |
| sigxy.plot | 0 | 0 | 0 | |
| sigxy.plot2 | 0.000 | 0.000 | 0.001 | |
| v2m | 0.048 | 0.007 | 0.055 | |