| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2024-04-17 11:36:45 -0400 (Wed, 17 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4676 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4414 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4437 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 641/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EnrichmentBrowser 2.32.0 (landing page) Ludwig Geistlinger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the EnrichmentBrowser package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EnrichmentBrowser.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: EnrichmentBrowser |
| Version: 2.32.0 |
| Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:EnrichmentBrowser.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings EnrichmentBrowser_2.32.0.tar.gz |
| StartedAt: 2024-04-16 00:30:44 -0400 (Tue, 16 Apr 2024) |
| EndedAt: 2024-04-16 00:37:27 -0400 (Tue, 16 Apr 2024) |
| EllapsedTime: 403.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: EnrichmentBrowser.Rcheck |
| Warnings: 0 |
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### Running command:
###
### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:EnrichmentBrowser.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings EnrichmentBrowser_2.32.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/EnrichmentBrowser.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 12.3.0
GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'EnrichmentBrowser/DESCRIPTION' ... OK
* this is package 'EnrichmentBrowser' version '2.32.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EnrichmentBrowser' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'pathview:::parseKGML2Graph2'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getGOFromBiomart: no visible binding for global variable
'go_linkage_type'
Undefined global functions or variables:
go_linkage_type
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ebrowser 86.00 15.45 101.48
getGenesets 14.49 0.59 19.39
eaBrowse 9.54 1.95 11.77
deAna 4.94 0.36 5.29
import 4.97 0.24 5.20
compileGRN 4.77 0.24 5.01
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'F:/biocbuild/bbs-3.18-bioc/meat/EnrichmentBrowser.Rcheck/00check.log'
for details.
EnrichmentBrowser.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL EnrichmentBrowser ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library' * installing *source* package 'EnrichmentBrowser' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EnrichmentBrowser)
EnrichmentBrowser.Rcheck/EnrichmentBrowser-Ex.timings
| name | user | system | elapsed | |
| combResults | 1.15 | 0.00 | 1.16 | |
| compileGRN | 4.77 | 0.24 | 5.01 | |
| configEBrowser | 0 | 0 | 0 | |
| deAna | 4.94 | 0.36 | 5.29 | |
| downloadPathways | 0 | 0 | 0 | |
| eaBrowse | 9.54 | 1.95 | 11.77 | |
| ebrowser | 86.00 | 15.45 | 101.48 | |
| getGenesets | 14.49 | 0.59 | 19.39 | |
| ggeaGraph | 4.56 | 0.02 | 4.57 | |
| idMap | 1.25 | 0.54 | 1.85 | |
| import | 4.97 | 0.24 | 5.20 | |
| isAvailable | 0 | 0 | 0 | |
| makeExampleData | 0.02 | 0.00 | 0.01 | |
| nbea | 0.31 | 0.00 | 0.32 | |
| normalize | 0.67 | 0.19 | 0.85 | |
| plots | 2.09 | 1.16 | 2.27 | |
| probe2gene | 0.10 | 0.03 | 0.08 | |
| readSE | 0.08 | 0.00 | 0.08 | |
| sbea | 0.22 | 0.02 | 0.23 | |