| Back to Multiple platform build/check report for BioC 3.17 |
|
This page was generated on 2023-04-12 10:55:37 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 941/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.5.4 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||||
| Package: HPiP |
| Version: 1.5.4 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings HPiP_1.5.4.tar.gz |
| StartedAt: 2023-04-12 06:50:43 -0400 (Wed, 12 Apr 2023) |
| EndedAt: 2023-04-12 07:06:21 -0400 (Wed, 12 Apr 2023) |
| EllapsedTime: 937.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings HPiP_1.5.4.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2023-02-14 r83833)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.5.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 37.092 1.040 38.135
corr_plot 34.246 0.824 35.553
FSmethod 33.841 0.663 35.611
pred_ensembel 14.083 0.474 11.038
enrichfindP 0.450 0.060 51.329
getFASTA 0.099 0.012 5.003
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 103.578215
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 98.644600
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 101.240499
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.505991
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 97.764134
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 97.621620
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 112.171737
iter 10 value 94.484212
iter 10 value 94.484211
iter 10 value 94.484211
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 95.398139
final value 93.701657
converged
Fitting Repeat 4
# weights: 305
initial value 98.399810
iter 10 value 94.300330
iter 20 value 92.214593
iter 30 value 92.210364
iter 40 value 92.209883
iter 40 value 92.209883
iter 40 value 92.209883
final value 92.209883
converged
Fitting Repeat 5
# weights: 305
initial value 101.518173
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 101.591302
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 95.924153
iter 10 value 94.264859
iter 10 value 94.264858
iter 10 value 94.264858
final value 94.264858
converged
Fitting Repeat 3
# weights: 507
initial value 105.005810
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 102.912252
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 109.319849
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 110.039822
iter 10 value 94.490802
iter 20 value 94.314270
iter 30 value 91.388358
iter 40 value 88.847313
iter 50 value 88.376297
iter 60 value 87.032344
iter 70 value 87.027402
final value 87.027397
converged
Fitting Repeat 2
# weights: 103
initial value 106.796018
iter 10 value 94.486407
iter 20 value 91.672509
iter 30 value 87.940720
iter 40 value 87.579687
iter 50 value 87.120950
iter 60 value 87.034115
iter 70 value 87.028063
final value 87.028058
converged
Fitting Repeat 3
# weights: 103
initial value 97.690460
iter 10 value 94.457641
iter 20 value 86.509918
iter 30 value 85.871352
iter 40 value 85.788541
iter 50 value 85.711258
iter 60 value 85.668123
final value 85.664386
converged
Fitting Repeat 4
# weights: 103
initial value 103.934361
iter 10 value 94.487789
iter 20 value 91.417510
iter 30 value 90.094788
iter 40 value 87.662679
iter 50 value 87.143327
iter 60 value 87.027658
final value 87.027398
converged
Fitting Repeat 5
# weights: 103
initial value 99.545769
iter 10 value 89.809294
iter 20 value 87.701294
iter 30 value 84.355170
iter 40 value 84.154475
iter 50 value 83.903932
iter 60 value 83.715249
iter 70 value 83.544814
iter 80 value 83.520464
final value 83.520417
converged
Fitting Repeat 1
# weights: 305
initial value 99.959514
iter 10 value 94.434756
iter 20 value 86.928385
iter 30 value 84.979074
iter 40 value 84.714269
iter 50 value 84.004426
iter 60 value 83.385202
iter 70 value 83.088686
iter 80 value 83.065377
iter 90 value 83.035601
iter 100 value 82.989469
final value 82.989469
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.126689
iter 10 value 94.493703
iter 20 value 93.100488
iter 30 value 89.274620
iter 40 value 86.822070
iter 50 value 85.144969
iter 60 value 84.377431
iter 70 value 84.162127
iter 80 value 83.512962
iter 90 value 83.103771
iter 100 value 82.912107
final value 82.912107
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.072941
iter 10 value 94.490130
iter 20 value 87.951517
iter 30 value 86.743744
iter 40 value 86.018576
iter 50 value 85.858620
iter 60 value 84.688913
iter 70 value 84.045740
iter 80 value 83.930018
iter 90 value 83.862596
iter 100 value 83.768187
final value 83.768187
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.762943
iter 10 value 94.500675
iter 20 value 90.451649
iter 30 value 84.954207
iter 40 value 84.274969
iter 50 value 83.872585
iter 60 value 83.820605
iter 70 value 83.764156
iter 80 value 83.517260
iter 90 value 83.349401
iter 100 value 82.983733
final value 82.983733
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.130417
iter 10 value 94.355753
iter 20 value 90.038560
iter 30 value 86.221823
iter 40 value 85.859354
iter 50 value 85.024005
iter 60 value 83.546968
iter 70 value 83.221941
iter 80 value 82.987285
iter 90 value 82.754689
iter 100 value 82.459950
final value 82.459950
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 111.350864
iter 10 value 94.526991
iter 20 value 89.665615
iter 30 value 85.422061
iter 40 value 84.803747
iter 50 value 83.854713
iter 60 value 83.336723
iter 70 value 82.889131
iter 80 value 82.509519
iter 90 value 82.350927
iter 100 value 82.261015
final value 82.261015
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.619631
iter 10 value 93.638789
iter 20 value 88.883512
iter 30 value 86.503988
iter 40 value 85.342196
iter 50 value 85.119971
iter 60 value 84.846201
iter 70 value 84.117713
iter 80 value 83.627407
iter 90 value 83.084876
iter 100 value 82.776675
final value 82.776675
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 129.320924
iter 10 value 94.565523
iter 20 value 91.848748
iter 30 value 89.020534
iter 40 value 86.100891
iter 50 value 85.005229
iter 60 value 84.536537
iter 70 value 84.150510
iter 80 value 83.692429
iter 90 value 82.500206
iter 100 value 82.246728
final value 82.246728
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 119.633336
iter 10 value 95.931207
iter 20 value 91.791111
iter 30 value 86.393810
iter 40 value 84.835607
iter 50 value 83.645961
iter 60 value 82.883050
iter 70 value 82.814729
iter 80 value 82.663121
iter 90 value 82.405281
iter 100 value 82.306657
final value 82.306657
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 134.501667
iter 10 value 96.564636
iter 20 value 86.870998
iter 30 value 85.634470
iter 40 value 83.783408
iter 50 value 83.087012
iter 60 value 82.899365
iter 70 value 82.759898
iter 80 value 82.495280
iter 90 value 82.360395
iter 100 value 82.270838
final value 82.270838
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.212283
final value 94.430393
converged
Fitting Repeat 2
# weights: 103
initial value 95.153097
iter 10 value 94.485735
iter 20 value 94.355535
iter 30 value 89.636503
iter 40 value 88.898332
iter 50 value 85.986688
iter 60 value 85.977603
final value 85.977514
converged
Fitting Repeat 3
# weights: 103
initial value 98.161197
iter 10 value 94.430970
iter 20 value 94.293708
iter 30 value 94.159456
final value 94.157650
converged
Fitting Repeat 4
# weights: 103
initial value 103.786517
final value 94.485885
converged
Fitting Repeat 5
# weights: 103
initial value 104.469371
final value 94.485656
converged
Fitting Repeat 1
# weights: 305
initial value 106.609189
iter 10 value 94.491947
iter 20 value 93.985430
iter 30 value 90.849789
iter 40 value 90.845292
iter 50 value 90.844573
iter 60 value 90.843935
final value 90.843916
converged
Fitting Repeat 2
# weights: 305
initial value 124.819231
iter 10 value 94.489495
iter 20 value 94.350835
iter 30 value 87.131207
iter 40 value 87.071627
iter 50 value 84.932790
iter 60 value 83.390225
iter 70 value 83.235569
iter 80 value 83.076419
iter 90 value 83.075824
iter 100 value 83.046365
final value 83.046365
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.245640
iter 10 value 87.109908
iter 20 value 87.081095
final value 87.080076
converged
Fitting Repeat 4
# weights: 305
initial value 97.028663
iter 10 value 87.042671
iter 20 value 86.744211
iter 30 value 86.742249
final value 86.742142
converged
Fitting Repeat 5
# weights: 305
initial value 123.023449
iter 10 value 94.280286
iter 20 value 94.277497
iter 30 value 88.872471
iter 40 value 88.707105
iter 50 value 88.703817
iter 60 value 85.487452
iter 70 value 85.331492
iter 70 value 85.331491
iter 70 value 85.331491
final value 85.331491
converged
Fitting Repeat 1
# weights: 507
initial value 128.770886
iter 10 value 94.283514
iter 20 value 94.277348
iter 30 value 94.275484
final value 94.275472
converged
Fitting Repeat 2
# weights: 507
initial value 100.455947
iter 10 value 94.217371
iter 20 value 94.210450
iter 30 value 94.076188
iter 40 value 88.008386
iter 50 value 85.488946
iter 60 value 85.343592
iter 70 value 85.331393
iter 80 value 85.331272
iter 90 value 85.330671
iter 90 value 85.330671
final value 85.330671
converged
Fitting Repeat 3
# weights: 507
initial value 96.468743
iter 10 value 93.702060
iter 20 value 93.452305
iter 30 value 93.450558
iter 40 value 93.449908
iter 50 value 93.448783
iter 60 value 92.841901
iter 70 value 89.662741
final value 89.662432
converged
Fitting Repeat 4
# weights: 507
initial value 102.993821
iter 10 value 94.491762
iter 20 value 93.367989
iter 30 value 83.588556
iter 40 value 83.368624
iter 50 value 83.274068
final value 83.274041
converged
Fitting Repeat 5
# weights: 507
initial value 99.935015
iter 10 value 90.090510
iter 20 value 90.026317
iter 30 value 89.970043
iter 40 value 89.685346
iter 50 value 89.648392
final value 89.648000
converged
Fitting Repeat 1
# weights: 103
initial value 96.999473
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 102.359474
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 95.209889
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 95.539716
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 98.524684
final value 93.867391
converged
Fitting Repeat 1
# weights: 305
initial value 101.373138
iter 10 value 93.737832
iter 20 value 92.522433
iter 30 value 92.522048
final value 92.522043
converged
Fitting Repeat 2
# weights: 305
initial value 101.011113
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 94.711412
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 97.024530
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 111.392435
final value 94.052909
converged
Fitting Repeat 1
# weights: 507
initial value 104.366960
iter 10 value 92.475116
iter 20 value 83.706335
iter 30 value 83.662316
final value 83.661890
converged
Fitting Repeat 2
# weights: 507
initial value 108.679057
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 101.508973
iter 10 value 89.537940
iter 20 value 89.059100
iter 30 value 88.448897
final value 88.448880
converged
Fitting Repeat 4
# weights: 507
initial value 101.099033
iter 10 value 91.645844
iter 20 value 88.449509
iter 30 value 86.898054
iter 40 value 86.895935
final value 86.895932
converged
Fitting Repeat 5
# weights: 507
initial value 97.412772
final value 93.867391
converged
Fitting Repeat 1
# weights: 103
initial value 98.192318
iter 10 value 93.936734
iter 20 value 92.134489
iter 30 value 91.051057
iter 40 value 90.742831
iter 50 value 90.527834
final value 90.517269
converged
Fitting Repeat 2
# weights: 103
initial value 115.916962
iter 10 value 94.866273
iter 20 value 94.049686
iter 30 value 90.157164
iter 40 value 88.394038
iter 50 value 84.722115
iter 60 value 83.397785
iter 70 value 83.012190
iter 80 value 82.970736
final value 82.962702
converged
Fitting Repeat 3
# weights: 103
initial value 102.788237
iter 10 value 94.090697
iter 20 value 94.056736
iter 30 value 94.035111
iter 40 value 87.859136
iter 50 value 85.029112
iter 60 value 84.024417
iter 70 value 83.203038
iter 80 value 82.646357
iter 90 value 82.528926
final value 82.528662
converged
Fitting Repeat 4
# weights: 103
initial value 105.035836
iter 10 value 93.951449
iter 20 value 88.442019
iter 30 value 86.822134
iter 40 value 84.552900
iter 50 value 83.153397
iter 60 value 82.688870
iter 70 value 82.399980
iter 80 value 82.015791
final value 82.015781
converged
Fitting Repeat 5
# weights: 103
initial value 98.718100
iter 10 value 94.064434
iter 20 value 94.052955
iter 30 value 84.532641
iter 40 value 84.247880
iter 50 value 82.193278
iter 60 value 80.471688
iter 70 value 80.411566
iter 80 value 79.985842
final value 79.984018
converged
Fitting Repeat 1
# weights: 305
initial value 102.024087
iter 10 value 94.314698
iter 20 value 85.158372
iter 30 value 83.816941
iter 40 value 81.193817
iter 50 value 79.695910
iter 60 value 79.571515
iter 70 value 79.003661
iter 80 value 78.758368
iter 90 value 78.716963
iter 100 value 78.706820
final value 78.706820
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.504311
iter 10 value 92.440781
iter 20 value 85.281099
iter 30 value 84.079382
iter 40 value 83.815242
iter 50 value 83.011977
iter 60 value 81.375903
iter 70 value 79.871908
iter 80 value 79.094943
iter 90 value 79.012527
iter 100 value 78.849169
final value 78.849169
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.507307
iter 10 value 95.109476
iter 20 value 85.793346
iter 30 value 84.796634
iter 40 value 84.313543
iter 50 value 84.201169
iter 60 value 82.650619
iter 70 value 79.606811
iter 80 value 79.163493
iter 90 value 78.836068
iter 100 value 78.684904
final value 78.684904
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.381291
iter 10 value 93.866933
iter 20 value 81.632949
iter 30 value 81.031326
iter 40 value 80.018783
iter 50 value 79.345347
iter 60 value 79.015938
iter 70 value 78.966942
iter 80 value 78.935963
iter 90 value 78.574423
iter 100 value 78.341915
final value 78.341915
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.019455
iter 10 value 94.231697
iter 20 value 93.935229
iter 30 value 87.104957
iter 40 value 84.775777
iter 50 value 83.716447
iter 60 value 83.155086
iter 70 value 80.571686
iter 80 value 78.997436
iter 90 value 78.725941
iter 100 value 78.655677
final value 78.655677
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.972979
iter 10 value 99.714158
iter 20 value 95.522147
iter 30 value 94.069707
iter 40 value 93.077924
iter 50 value 92.017630
iter 60 value 83.676863
iter 70 value 81.014376
iter 80 value 80.182826
iter 90 value 80.097010
iter 100 value 79.767184
final value 79.767184
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 108.195100
iter 10 value 94.464936
iter 20 value 88.651975
iter 30 value 85.688810
iter 40 value 84.335957
iter 50 value 83.789219
iter 60 value 80.532351
iter 70 value 79.616220
iter 80 value 79.334388
iter 90 value 78.641513
iter 100 value 78.519672
final value 78.519672
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 108.805288
iter 10 value 95.117452
iter 20 value 90.454489
iter 30 value 86.254611
iter 40 value 83.066668
iter 50 value 82.806556
iter 60 value 82.513391
iter 70 value 81.508272
iter 80 value 81.176745
iter 90 value 81.023280
iter 100 value 80.924571
final value 80.924571
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.675111
iter 10 value 94.840803
iter 20 value 93.119136
iter 30 value 91.449560
iter 40 value 89.518050
iter 50 value 85.283703
iter 60 value 84.960337
iter 70 value 83.205877
iter 80 value 82.888186
iter 90 value 82.417077
iter 100 value 80.901771
final value 80.901771
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 143.581045
iter 10 value 94.800062
iter 20 value 86.480367
iter 30 value 83.944084
iter 40 value 82.948124
iter 50 value 81.892895
iter 60 value 79.109956
iter 70 value 78.859587
iter 80 value 78.705614
iter 90 value 78.650595
iter 100 value 78.598474
final value 78.598474
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.377302
final value 94.054400
converged
Fitting Repeat 2
# weights: 103
initial value 101.368338
final value 94.054308
converged
Fitting Repeat 3
# weights: 103
initial value 100.271904
final value 94.056913
converged
Fitting Repeat 4
# weights: 103
initial value 99.634485
iter 10 value 85.309348
final value 84.095402
converged
Fitting Repeat 5
# weights: 103
initial value 95.532289
iter 10 value 93.520130
iter 20 value 89.737896
iter 30 value 87.634575
iter 40 value 87.206250
iter 50 value 84.413126
iter 60 value 84.359894
iter 70 value 84.358879
iter 80 value 84.343047
iter 90 value 83.179554
final value 83.178525
converged
Fitting Repeat 1
# weights: 305
initial value 99.033437
iter 10 value 94.058270
iter 20 value 94.047596
final value 93.867466
converged
Fitting Repeat 2
# weights: 305
initial value 98.126284
iter 10 value 94.057769
iter 20 value 93.902084
iter 30 value 86.548683
iter 40 value 86.022669
iter 50 value 83.353737
iter 60 value 83.097448
final value 83.095996
converged
Fitting Repeat 3
# weights: 305
initial value 123.592107
iter 10 value 93.873462
iter 20 value 93.869337
iter 30 value 86.580486
iter 40 value 85.933889
iter 50 value 85.932941
iter 50 value 85.932940
iter 50 value 85.932940
final value 85.932940
converged
Fitting Repeat 4
# weights: 305
initial value 97.671455
iter 10 value 94.057923
iter 20 value 93.905292
iter 30 value 92.266809
iter 40 value 91.566191
iter 50 value 83.980085
iter 60 value 83.492770
iter 70 value 83.336394
iter 80 value 83.336260
iter 90 value 83.335338
final value 83.335283
converged
Fitting Repeat 5
# weights: 305
initial value 101.673742
iter 10 value 93.436018
iter 20 value 92.840407
iter 30 value 92.834475
iter 40 value 92.833380
iter 50 value 92.831625
final value 92.831443
converged
Fitting Repeat 1
# weights: 507
initial value 107.465570
iter 10 value 92.121459
iter 20 value 91.525711
iter 30 value 85.842222
iter 40 value 83.993459
iter 50 value 83.992076
iter 60 value 83.991660
iter 70 value 83.986796
iter 80 value 81.971656
iter 90 value 80.278647
iter 100 value 79.273616
final value 79.273616
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 98.185290
iter 10 value 94.057563
iter 20 value 93.542051
iter 30 value 93.540694
final value 93.540683
converged
Fitting Repeat 3
# weights: 507
initial value 96.445764
iter 10 value 93.748843
iter 20 value 93.714389
iter 30 value 93.709420
iter 40 value 93.706086
iter 50 value 90.424791
iter 60 value 87.271253
iter 70 value 87.257939
iter 80 value 87.257105
iter 90 value 87.094300
iter 100 value 86.146704
final value 86.146704
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.385047
iter 10 value 93.875653
iter 20 value 93.786431
iter 30 value 92.874464
iter 40 value 92.831774
iter 50 value 92.830434
iter 60 value 92.830364
final value 92.830267
converged
Fitting Repeat 5
# weights: 507
initial value 96.614623
iter 10 value 93.519554
iter 20 value 93.237029
iter 30 value 93.233279
iter 40 value 93.230685
iter 50 value 93.229129
final value 93.229007
converged
Fitting Repeat 1
# weights: 103
initial value 103.208750
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.990203
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 97.161921
final value 94.026542
converged
Fitting Repeat 4
# weights: 103
initial value 100.324149
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 100.600839
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 99.269300
iter 10 value 93.776741
iter 10 value 93.776741
final value 93.776721
converged
Fitting Repeat 2
# weights: 305
initial value 102.134432
final value 93.320225
converged
Fitting Repeat 3
# weights: 305
initial value 100.606146
final value 94.026542
converged
Fitting Repeat 4
# weights: 305
initial value 113.782504
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 112.226958
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 152.859187
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 97.202773
iter 10 value 93.788077
iter 10 value 93.788076
iter 10 value 93.788076
final value 93.788076
converged
Fitting Repeat 3
# weights: 507
initial value 98.170316
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 98.280029
final value 94.472273
converged
Fitting Repeat 5
# weights: 507
initial value 96.595904
final value 94.026542
converged
Fitting Repeat 1
# weights: 103
initial value 99.693635
iter 10 value 94.258955
iter 20 value 93.514087
iter 30 value 84.112106
iter 40 value 82.842248
iter 50 value 82.188802
iter 60 value 81.390848
iter 70 value 81.101459
final value 81.101451
converged
Fitting Repeat 2
# weights: 103
initial value 108.194278
iter 10 value 94.462105
iter 20 value 90.877996
iter 30 value 89.148644
iter 40 value 82.717173
iter 50 value 81.183219
iter 60 value 81.073184
final value 81.073035
converged
Fitting Repeat 3
# weights: 103
initial value 97.631517
iter 10 value 94.529667
iter 20 value 91.606588
iter 30 value 86.985729
iter 40 value 81.760168
iter 50 value 80.980164
iter 60 value 80.729763
iter 70 value 80.667372
final value 80.667281
converged
Fitting Repeat 4
# weights: 103
initial value 102.827267
iter 10 value 94.454270
iter 20 value 94.003491
iter 30 value 93.734396
iter 40 value 87.108040
iter 50 value 84.876004
iter 60 value 83.165828
iter 70 value 81.652419
iter 80 value 81.328895
iter 90 value 81.268677
iter 100 value 81.266830
final value 81.266830
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 102.824195
iter 10 value 94.486591
iter 20 value 93.630644
iter 30 value 86.550836
iter 40 value 85.159553
iter 50 value 84.966065
iter 60 value 84.616920
iter 70 value 80.494538
iter 80 value 79.770977
iter 90 value 79.279589
iter 100 value 79.110072
final value 79.110072
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 116.077085
iter 10 value 94.811475
iter 20 value 93.873807
iter 30 value 91.547651
iter 40 value 91.000369
iter 50 value 90.724977
iter 60 value 90.634248
iter 70 value 87.578794
iter 80 value 81.318312
iter 90 value 79.909994
iter 100 value 78.285164
final value 78.285164
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.521407
iter 10 value 94.280328
iter 20 value 89.946064
iter 30 value 89.627486
iter 40 value 86.038437
iter 50 value 82.026995
iter 60 value 80.800953
iter 70 value 79.953163
iter 80 value 79.617837
iter 90 value 79.511475
iter 100 value 79.284138
final value 79.284138
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.138477
iter 10 value 91.773348
iter 20 value 84.760175
iter 30 value 84.345387
iter 40 value 81.430605
iter 50 value 79.443315
iter 60 value 78.887244
iter 70 value 78.499346
iter 80 value 78.215950
iter 90 value 77.995237
iter 100 value 77.986165
final value 77.986165
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.676941
iter 10 value 94.247575
iter 20 value 83.941294
iter 30 value 82.473356
iter 40 value 80.065596
iter 50 value 78.703860
iter 60 value 78.351504
iter 70 value 78.145264
iter 80 value 77.949851
iter 90 value 77.920935
iter 100 value 77.916901
final value 77.916901
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.342944
iter 10 value 94.568899
iter 20 value 93.373501
iter 30 value 84.358663
iter 40 value 83.694549
iter 50 value 83.032393
iter 60 value 80.968168
iter 70 value 80.817083
iter 80 value 80.264198
iter 90 value 79.871907
iter 100 value 79.470245
final value 79.470245
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 130.822436
iter 10 value 94.755097
iter 20 value 92.619801
iter 30 value 89.056786
iter 40 value 83.569663
iter 50 value 82.668192
iter 60 value 79.884355
iter 70 value 78.677333
iter 80 value 78.260253
iter 90 value 77.979947
iter 100 value 77.690319
final value 77.690319
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 136.898828
iter 10 value 94.203966
iter 20 value 88.222691
iter 30 value 86.347524
iter 40 value 85.448298
iter 50 value 82.878054
iter 60 value 78.851260
iter 70 value 78.239423
iter 80 value 78.056617
iter 90 value 77.958912
iter 100 value 77.880108
final value 77.880108
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.065181
iter 10 value 94.249011
iter 20 value 85.069569
iter 30 value 82.505923
iter 40 value 81.252548
iter 50 value 80.735266
iter 60 value 80.559648
iter 70 value 80.491472
iter 80 value 79.251368
iter 90 value 77.747778
iter 100 value 77.424991
final value 77.424991
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.268095
iter 10 value 94.197397
iter 20 value 91.060463
iter 30 value 85.815025
iter 40 value 81.580773
iter 50 value 81.048282
iter 60 value 80.858566
iter 70 value 80.414797
iter 80 value 78.932101
iter 90 value 78.272608
iter 100 value 78.095311
final value 78.095311
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.637791
iter 10 value 94.452204
iter 20 value 93.316939
iter 30 value 83.125277
iter 40 value 81.055429
iter 50 value 79.378099
iter 60 value 79.201598
iter 70 value 79.092850
iter 80 value 78.758384
iter 90 value 78.236568
iter 100 value 77.922301
final value 77.922301
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 104.425733
final value 94.485758
converged
Fitting Repeat 2
# weights: 103
initial value 107.208893
final value 94.485852
converged
Fitting Repeat 3
# weights: 103
initial value 99.994020
iter 10 value 94.497913
final value 94.495304
converged
Fitting Repeat 4
# weights: 103
initial value 105.677194
final value 94.485786
converged
Fitting Repeat 5
# weights: 103
initial value 96.621485
iter 10 value 94.486116
iter 20 value 94.484231
final value 94.484221
converged
Fitting Repeat 1
# weights: 305
initial value 110.497664
iter 10 value 94.488831
iter 20 value 94.484351
iter 30 value 93.788245
final value 93.788242
converged
Fitting Repeat 2
# weights: 305
initial value 95.663927
iter 10 value 91.628317
iter 20 value 82.363594
iter 30 value 82.308127
iter 40 value 82.306394
iter 50 value 80.307968
iter 60 value 80.150931
iter 70 value 80.150483
iter 80 value 80.149327
iter 90 value 80.146818
iter 100 value 80.146715
final value 80.146715
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.199036
iter 10 value 94.489600
iter 20 value 94.313028
iter 30 value 94.031423
iter 40 value 94.027137
final value 94.027084
converged
Fitting Repeat 4
# weights: 305
initial value 98.790140
iter 10 value 93.794539
iter 20 value 93.552440
final value 93.322556
converged
Fitting Repeat 5
# weights: 305
initial value 104.468692
iter 10 value 94.489166
iter 20 value 94.484337
iter 30 value 91.800078
iter 40 value 82.285656
iter 50 value 80.458518
iter 60 value 80.305311
iter 70 value 80.297044
iter 80 value 80.289682
iter 90 value 80.162457
iter 100 value 79.439811
final value 79.439811
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 105.096783
iter 10 value 94.491955
iter 20 value 93.559006
iter 30 value 93.309248
final value 93.308514
converged
Fitting Repeat 2
# weights: 507
initial value 102.829066
iter 10 value 91.160800
iter 20 value 91.044369
iter 30 value 91.042551
iter 40 value 91.039500
iter 50 value 91.037211
final value 91.036790
converged
Fitting Repeat 3
# weights: 507
initial value 99.987011
iter 10 value 94.250492
iter 20 value 92.347108
iter 30 value 91.943265
iter 40 value 91.934433
iter 50 value 91.933405
iter 60 value 91.872984
iter 70 value 82.944229
iter 80 value 81.263556
iter 90 value 80.885027
iter 100 value 80.880325
final value 80.880325
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.043550
iter 10 value 94.491163
iter 20 value 90.929021
iter 30 value 82.905387
iter 30 value 82.905387
iter 30 value 82.905387
final value 82.905387
converged
Fitting Repeat 5
# weights: 507
initial value 99.465425
iter 10 value 94.492625
iter 20 value 84.294138
iter 30 value 82.908050
iter 40 value 82.905673
iter 50 value 81.771198
iter 60 value 81.576427
iter 70 value 81.249963
final value 81.235376
converged
Fitting Repeat 1
# weights: 103
initial value 101.773656
iter 10 value 93.463582
iter 20 value 83.688434
final value 83.652697
converged
Fitting Repeat 2
# weights: 103
initial value 103.349591
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.415325
final value 94.466823
converged
Fitting Repeat 4
# weights: 103
initial value 98.831053
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 101.461598
final value 94.466822
converged
Fitting Repeat 1
# weights: 305
initial value 104.452865
final value 94.466823
converged
Fitting Repeat 2
# weights: 305
initial value 95.750991
final value 94.117498
converged
Fitting Repeat 3
# weights: 305
initial value 106.671428
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 100.798090
iter 10 value 94.144481
iter 10 value 94.144481
iter 10 value 94.144481
final value 94.144481
converged
Fitting Repeat 5
# weights: 305
initial value 111.794756
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 110.143361
iter 10 value 94.484211
iter 10 value 94.484211
iter 10 value 94.484211
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 101.431062
iter 10 value 86.377238
iter 20 value 81.863103
iter 30 value 81.769304
iter 40 value 81.763316
final value 81.762741
converged
Fitting Repeat 3
# weights: 507
initial value 96.020537
final value 94.466823
converged
Fitting Repeat 4
# weights: 507
initial value 106.807532
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 116.980104
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.105878
iter 10 value 91.767326
iter 20 value 86.736091
iter 30 value 83.153882
iter 40 value 82.536557
iter 50 value 82.508220
iter 60 value 82.476426
final value 82.476394
converged
Fitting Repeat 2
# weights: 103
initial value 101.523246
iter 10 value 93.537815
iter 20 value 84.747353
iter 30 value 82.571396
iter 40 value 82.527407
iter 50 value 82.477477
final value 82.476394
converged
Fitting Repeat 3
# weights: 103
initial value 98.494612
iter 10 value 94.453359
iter 20 value 94.173230
iter 30 value 92.449054
iter 40 value 92.338014
iter 50 value 91.947420
iter 60 value 87.061916
final value 87.052552
converged
Fitting Repeat 4
# weights: 103
initial value 97.032296
iter 10 value 94.426233
iter 20 value 87.956546
iter 30 value 86.056576
iter 40 value 85.812284
iter 50 value 85.442109
iter 60 value 85.307006
iter 70 value 82.482755
final value 82.476394
converged
Fitting Repeat 5
# weights: 103
initial value 101.348633
iter 10 value 94.531806
iter 20 value 94.272538
iter 30 value 87.240837
iter 40 value 83.510273
iter 50 value 82.708017
iter 60 value 81.931779
iter 70 value 81.843984
iter 80 value 81.795635
iter 90 value 81.761104
iter 100 value 81.677047
final value 81.677047
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 116.310785
iter 10 value 94.506205
iter 20 value 84.041445
iter 30 value 83.030503
iter 40 value 82.840446
iter 50 value 82.267149
iter 60 value 82.178568
iter 70 value 82.147685
iter 80 value 81.981648
iter 90 value 81.016400
iter 100 value 80.825224
final value 80.825224
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.771530
iter 10 value 94.540972
iter 20 value 94.275739
iter 30 value 91.544499
iter 40 value 84.441581
iter 50 value 83.507889
iter 60 value 83.223649
iter 70 value 83.023186
iter 80 value 82.821303
iter 90 value 82.477319
iter 100 value 82.070628
final value 82.070628
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 118.620802
iter 10 value 94.395270
iter 20 value 89.656255
iter 30 value 85.201076
iter 40 value 82.608612
iter 50 value 81.935025
iter 60 value 81.567209
iter 70 value 81.191571
iter 80 value 80.353530
iter 90 value 80.176552
iter 100 value 80.143223
final value 80.143223
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 118.148097
iter 10 value 94.411981
iter 20 value 91.354111
iter 30 value 86.471224
iter 40 value 83.376322
iter 50 value 82.628865
iter 60 value 82.028397
iter 70 value 81.765872
iter 80 value 80.928506
iter 90 value 80.247371
iter 100 value 80.028551
final value 80.028551
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.081295
iter 10 value 94.453490
iter 20 value 90.356563
iter 30 value 86.534347
iter 40 value 83.674183
iter 50 value 81.314965
iter 60 value 80.958437
iter 70 value 80.733962
iter 80 value 80.515113
iter 90 value 80.287924
iter 100 value 80.186664
final value 80.186664
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.432248
iter 10 value 94.397535
iter 20 value 88.800328
iter 30 value 86.578256
iter 40 value 85.553814
iter 50 value 84.756161
iter 60 value 83.596767
iter 70 value 82.132545
iter 80 value 81.309490
iter 90 value 80.916119
iter 100 value 80.772577
final value 80.772577
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.416126
iter 10 value 94.455212
iter 20 value 90.332819
iter 30 value 84.629131
iter 40 value 82.765583
iter 50 value 82.076775
iter 60 value 82.019717
iter 70 value 81.650406
iter 80 value 81.101671
iter 90 value 80.836377
iter 100 value 80.533582
final value 80.533582
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 118.555140
iter 10 value 94.984748
iter 20 value 93.899440
iter 30 value 90.523657
iter 40 value 89.558420
iter 50 value 84.499005
iter 60 value 82.775646
iter 70 value 82.269943
iter 80 value 82.199764
iter 90 value 82.015373
iter 100 value 81.117045
final value 81.117045
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.229931
iter 10 value 95.221142
iter 20 value 87.222231
iter 30 value 85.426136
iter 40 value 83.057045
iter 50 value 82.430884
iter 60 value 82.098502
iter 70 value 81.537330
iter 80 value 81.232970
iter 90 value 81.110535
iter 100 value 81.051503
final value 81.051503
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 115.809646
iter 10 value 95.129375
iter 20 value 94.383070
iter 30 value 84.726303
iter 40 value 82.812281
iter 50 value 82.456569
iter 60 value 82.174088
iter 70 value 81.606374
iter 80 value 81.313031
iter 90 value 80.610162
iter 100 value 80.371027
final value 80.371027
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.902648
iter 10 value 94.485868
iter 20 value 94.484227
final value 94.484221
converged
Fitting Repeat 2
# weights: 103
initial value 103.660311
final value 94.485796
converged
Fitting Repeat 3
# weights: 103
initial value 102.828921
final value 94.485814
converged
Fitting Repeat 4
# weights: 103
initial value 110.917218
iter 10 value 94.486122
final value 94.484283
converged
Fitting Repeat 5
# weights: 103
initial value 101.509025
iter 10 value 94.468664
iter 20 value 94.467036
iter 30 value 83.349150
iter 40 value 82.484291
iter 50 value 81.767838
iter 60 value 81.766871
iter 70 value 81.633843
iter 80 value 80.662274
final value 80.647066
converged
Fitting Repeat 1
# weights: 305
initial value 120.830663
iter 10 value 94.260026
iter 20 value 94.258417
iter 30 value 92.667900
iter 40 value 83.572261
iter 50 value 81.326477
final value 81.326349
converged
Fitting Repeat 2
# weights: 305
initial value 101.528013
iter 10 value 94.488117
iter 20 value 94.458664
iter 30 value 94.002083
iter 40 value 93.693816
iter 50 value 93.693343
iter 60 value 93.693100
iter 70 value 93.691411
iter 80 value 93.456397
iter 90 value 85.079352
iter 100 value 85.058149
final value 85.058149
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.699078
iter 10 value 94.492090
iter 20 value 94.124751
iter 30 value 87.162754
iter 40 value 86.637306
iter 50 value 86.636735
iter 60 value 83.063317
iter 70 value 82.712286
iter 80 value 81.785203
iter 90 value 81.682772
iter 100 value 81.638849
final value 81.638849
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.352857
iter 10 value 94.488583
iter 20 value 94.396918
iter 30 value 94.147617
iter 40 value 94.147367
iter 50 value 94.146262
iter 60 value 94.118528
final value 94.117606
converged
Fitting Repeat 5
# weights: 305
initial value 110.885664
iter 10 value 94.487957
iter 20 value 94.483444
final value 94.466916
converged
Fitting Repeat 1
# weights: 507
initial value 103.634940
iter 10 value 94.492031
iter 20 value 94.329776
iter 30 value 87.143127
iter 40 value 82.228154
iter 50 value 81.170572
iter 60 value 81.037011
iter 70 value 81.011768
iter 80 value 81.003834
iter 90 value 80.952780
iter 100 value 80.189004
final value 80.189004
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.140075
iter 10 value 87.350788
iter 20 value 87.295288
iter 30 value 86.972634
iter 40 value 86.551776
iter 50 value 84.987136
iter 60 value 82.392596
iter 70 value 80.997790
iter 80 value 80.031892
iter 90 value 79.952609
iter 100 value 79.952223
final value 79.952223
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 98.026721
iter 10 value 94.475478
iter 20 value 91.414518
iter 30 value 85.100639
iter 40 value 85.094630
iter 50 value 82.809956
iter 60 value 82.099325
iter 70 value 82.088417
iter 80 value 81.044830
final value 81.044799
converged
Fitting Repeat 4
# weights: 507
initial value 109.273472
iter 10 value 94.474705
iter 20 value 94.467419
iter 30 value 93.277708
iter 40 value 84.344405
iter 50 value 84.239924
iter 60 value 84.238121
iter 70 value 84.232304
iter 80 value 83.979433
iter 90 value 83.824130
iter 100 value 83.817196
final value 83.817196
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 99.307952
iter 10 value 94.488201
iter 20 value 91.869976
iter 30 value 91.078266
iter 40 value 87.167391
iter 50 value 82.185781
iter 60 value 81.923317
iter 70 value 80.894004
iter 80 value 80.777147
iter 90 value 80.775849
iter 100 value 80.774852
final value 80.774852
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.536379
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 99.272118
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 97.359159
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 95.544843
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 96.839653
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 98.440923
final value 93.582418
converged
Fitting Repeat 2
# weights: 305
initial value 98.124562
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 110.699601
iter 10 value 93.523810
iter 10 value 93.523810
iter 10 value 93.523810
final value 93.523810
converged
Fitting Repeat 4
# weights: 305
initial value 98.294692
final value 94.033149
converged
Fitting Repeat 5
# weights: 305
initial value 98.631701
iter 10 value 88.430025
iter 20 value 87.713932
iter 30 value 87.665601
iter 30 value 87.665600
iter 30 value 87.665600
final value 87.665600
converged
Fitting Repeat 1
# weights: 507
initial value 98.946708
iter 10 value 93.582419
iter 10 value 93.582418
iter 10 value 93.582418
final value 93.582418
converged
Fitting Repeat 2
# weights: 507
initial value 118.715916
iter 10 value 93.570482
final value 93.569788
converged
Fitting Repeat 3
# weights: 507
initial value 108.362063
final value 93.356642
converged
Fitting Repeat 4
# weights: 507
initial value 95.061335
iter 10 value 86.310073
iter 20 value 83.995001
iter 30 value 83.972688
iter 40 value 83.972546
iter 50 value 83.972479
final value 83.972454
converged
Fitting Repeat 5
# weights: 507
initial value 102.101809
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 101.514114
iter 10 value 94.082897
iter 20 value 94.052649
iter 30 value 92.224342
iter 40 value 88.848472
iter 50 value 86.495745
iter 60 value 86.213563
iter 70 value 86.159007
final value 86.158457
converged
Fitting Repeat 2
# weights: 103
initial value 99.888737
iter 10 value 94.023420
iter 20 value 88.250027
iter 30 value 86.530909
iter 40 value 86.428989
final value 86.408552
converged
Fitting Repeat 3
# weights: 103
initial value 104.269028
iter 10 value 94.056713
iter 20 value 88.038668
iter 30 value 86.385117
iter 40 value 86.307613
iter 50 value 86.095650
iter 60 value 85.514487
iter 70 value 85.361404
iter 80 value 84.773697
iter 90 value 84.361910
final value 84.359656
converged
Fitting Repeat 4
# weights: 103
initial value 97.231952
iter 10 value 93.076013
iter 20 value 90.908054
iter 30 value 89.255635
iter 40 value 87.363594
iter 50 value 82.865990
iter 60 value 81.708183
iter 70 value 81.120930
final value 81.114774
converged
Fitting Repeat 5
# weights: 103
initial value 117.468544
iter 10 value 94.098160
iter 20 value 93.995322
iter 30 value 89.301898
iter 40 value 88.824257
iter 50 value 87.873583
iter 60 value 87.484782
iter 70 value 86.686502
iter 80 value 85.593649
iter 90 value 85.235474
iter 100 value 85.030462
final value 85.030462
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 109.138845
iter 10 value 94.046774
iter 20 value 93.526602
iter 30 value 91.506607
iter 40 value 86.815529
iter 50 value 84.553029
iter 60 value 82.989200
iter 70 value 82.634043
iter 80 value 82.431570
iter 90 value 81.850101
iter 100 value 80.947291
final value 80.947291
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.605291
iter 10 value 93.544249
iter 20 value 86.106928
iter 30 value 84.722352
iter 40 value 84.553318
iter 50 value 84.445313
iter 60 value 83.537532
iter 70 value 81.997922
iter 80 value 81.013568
iter 90 value 80.720607
iter 100 value 80.160739
final value 80.160739
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.226135
iter 10 value 93.734518
iter 20 value 93.644700
iter 30 value 90.573841
iter 40 value 87.249989
iter 50 value 86.081702
iter 60 value 83.693369
iter 70 value 82.962780
iter 80 value 82.540279
iter 90 value 81.453819
iter 100 value 80.819617
final value 80.819617
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.449495
iter 10 value 93.968569
iter 20 value 92.829130
iter 30 value 88.202035
iter 40 value 85.814695
iter 50 value 84.092503
iter 60 value 82.397596
iter 70 value 80.993257
iter 80 value 80.156317
iter 90 value 79.779622
iter 100 value 79.483294
final value 79.483294
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 119.433911
iter 10 value 94.088486
iter 20 value 92.777918
iter 30 value 86.609626
iter 40 value 84.939462
iter 50 value 83.743857
iter 60 value 82.295228
iter 70 value 80.650258
iter 80 value 80.442288
iter 90 value 80.142537
iter 100 value 80.079935
final value 80.079935
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.078608
iter 10 value 95.520282
iter 20 value 94.098516
iter 30 value 93.873295
iter 40 value 93.472171
iter 50 value 93.350470
iter 60 value 91.138610
iter 70 value 85.938575
iter 80 value 82.726710
iter 90 value 82.210888
iter 100 value 81.138258
final value 81.138258
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.316935
iter 10 value 94.015122
iter 20 value 93.580576
iter 30 value 91.965617
iter 40 value 89.948324
iter 50 value 83.150435
iter 60 value 81.638382
iter 70 value 80.767286
iter 80 value 80.282914
iter 90 value 79.877498
iter 100 value 79.821188
final value 79.821188
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 119.359864
iter 10 value 94.063490
iter 20 value 88.151104
iter 30 value 86.621157
iter 40 value 84.708524
iter 50 value 81.645599
iter 60 value 80.657206
iter 70 value 80.221976
iter 80 value 79.959165
iter 90 value 79.876095
iter 100 value 79.735471
final value 79.735471
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.161639
iter 10 value 94.564540
iter 20 value 93.746395
iter 30 value 86.136990
iter 40 value 82.777114
iter 50 value 81.454559
iter 60 value 80.588695
iter 70 value 80.339425
iter 80 value 80.306871
iter 90 value 80.291095
iter 100 value 80.276988
final value 80.276988
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.206933
iter 10 value 94.008379
iter 20 value 90.713204
iter 30 value 90.330818
iter 40 value 86.526391
iter 50 value 85.510303
iter 60 value 84.031059
iter 70 value 83.957745
iter 80 value 83.814346
iter 90 value 82.987990
iter 100 value 81.019795
final value 81.019795
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.776904
iter 10 value 93.549276
iter 20 value 93.483411
final value 93.482319
converged
Fitting Repeat 2
# weights: 103
initial value 101.651404
iter 10 value 94.054694
final value 94.052919
converged
Fitting Repeat 3
# weights: 103
initial value 93.594116
iter 10 value 88.476144
final value 88.467041
converged
Fitting Repeat 4
# weights: 103
initial value 111.185980
iter 10 value 94.054702
iter 20 value 93.990358
iter 30 value 93.274860
final value 93.270038
converged
Fitting Repeat 5
# weights: 103
initial value 100.153528
final value 94.054423
converged
Fitting Repeat 1
# weights: 305
initial value 102.723481
iter 10 value 89.828819
iter 20 value 88.470251
iter 30 value 88.465261
iter 40 value 88.464560
iter 50 value 86.283815
iter 60 value 86.001835
iter 70 value 85.994549
final value 85.994533
converged
Fitting Repeat 2
# weights: 305
initial value 99.657958
iter 10 value 94.057366
iter 20 value 94.052893
iter 30 value 88.467495
final value 88.466300
converged
Fitting Repeat 3
# weights: 305
initial value 108.533512
iter 10 value 93.492608
iter 20 value 93.486089
iter 30 value 93.287441
final value 93.284642
converged
Fitting Repeat 4
# weights: 305
initial value 94.698638
iter 10 value 94.037788
iter 20 value 87.701715
iter 30 value 86.919540
iter 40 value 86.915979
final value 86.915973
converged
Fitting Repeat 5
# weights: 305
initial value 116.484408
iter 10 value 93.361365
iter 20 value 92.863502
iter 30 value 90.361388
iter 40 value 90.360481
iter 50 value 90.360363
final value 90.360330
converged
Fitting Repeat 1
# weights: 507
initial value 100.326174
iter 10 value 93.591074
iter 20 value 93.584988
final value 93.583511
converged
Fitting Repeat 2
# weights: 507
initial value 102.719952
iter 10 value 93.549507
iter 20 value 93.354611
iter 30 value 93.352952
iter 40 value 93.350529
iter 50 value 93.336331
iter 60 value 93.274294
iter 70 value 93.273381
iter 80 value 93.270384
final value 93.270125
converged
Fitting Repeat 3
# weights: 507
initial value 104.662347
iter 10 value 94.054518
iter 20 value 94.014597
iter 30 value 94.014308
final value 94.014186
converged
Fitting Repeat 4
# weights: 507
initial value 95.532290
iter 10 value 93.148879
iter 20 value 92.123073
iter 30 value 91.902086
iter 40 value 91.540418
iter 50 value 91.439546
iter 60 value 91.398490
iter 70 value 91.397302
final value 91.397082
converged
Fitting Repeat 5
# weights: 507
initial value 102.189240
iter 10 value 93.590734
iter 20 value 93.584667
final value 93.584583
converged
Fitting Repeat 1
# weights: 103
initial value 120.989180
final value 117.891785
converged
Fitting Repeat 2
# weights: 103
initial value 126.088828
final value 117.891835
converged
Fitting Repeat 3
# weights: 103
initial value 118.304161
final value 117.760342
converged
Fitting Repeat 4
# weights: 103
initial value 134.078694
final value 117.891857
converged
Fitting Repeat 5
# weights: 103
initial value 122.079792
final value 117.891912
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Wed Apr 12 06:56:43 2023
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
44.200 2.147 85.836
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.841 | 0.663 | 35.611 | |
| FreqInteractors | 0.260 | 0.008 | 0.269 | |
| calculateAAC | 0.034 | 0.013 | 0.046 | |
| calculateAutocor | 0.318 | 0.031 | 0.350 | |
| calculateCTDC | 0.084 | 0.000 | 0.084 | |
| calculateCTDD | 0.665 | 0.004 | 0.669 | |
| calculateCTDT | 0.236 | 0.012 | 0.247 | |
| calculateCTriad | 0.400 | 0.008 | 0.408 | |
| calculateDC | 0.088 | 0.000 | 0.089 | |
| calculateF | 0.323 | 0.004 | 0.328 | |
| calculateKSAAP | 0.097 | 0.000 | 0.098 | |
| calculateQD_Sm | 1.813 | 0.020 | 2.053 | |
| calculateTC | 1.755 | 0.044 | 1.799 | |
| calculateTC_Sm | 0.226 | 0.000 | 0.226 | |
| corr_plot | 34.246 | 0.824 | 35.553 | |
| enrichfindP | 0.450 | 0.060 | 51.329 | |
| enrichfind_hp | 0.048 | 0.003 | 2.862 | |
| enrichplot | 0.361 | 0.020 | 0.382 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.099 | 0.012 | 5.003 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.002 | 0.003 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.000 | 0.001 | 0.002 | |
| plotPPI | 0.103 | 0.000 | 0.103 | |
| pred_ensembel | 14.083 | 0.474 | 11.038 | |
| var_imp | 37.092 | 1.040 | 38.135 | |