| Back to Multiple platform build/check report for BioC 3.17 |
|
This page was generated on 2023-04-12 10:55:26 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 941/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.5.4 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||||
| Package: HPiP |
| Version: 1.5.4 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings HPiP_1.5.4.tar.gz |
| StartedAt: 2023-04-11 20:56:03 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 21:11:26 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 922.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings HPiP_1.5.4.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck’
* using R version 4.3.0 alpha (2023-04-03 r84154)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.5.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 37.249 1.076 38.326
FSmethod 34.810 0.568 35.379
corr_plot 34.568 0.588 35.157
pred_ensembel 14.111 0.676 11.030
getFASTA 0.485 0.012 5.084
enrichfindP 0.449 0.013 51.136
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.3.0 alpha (2023-04-03 r84154)
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 105.059413
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 94.541438
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 98.567247
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.787063
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 98.229822
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 102.165130
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 99.376519
final value 94.252920
converged
Fitting Repeat 3
# weights: 305
initial value 102.852796
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 96.530460
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 100.822207
iter 10 value 94.276803
final value 94.275371
converged
Fitting Repeat 1
# weights: 507
initial value 118.417806
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 104.795775
iter 10 value 91.922076
iter 20 value 91.609360
final value 91.609200
converged
Fitting Repeat 3
# weights: 507
initial value 97.045797
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 98.983070
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 95.372531
final value 94.482149
converged
Fitting Repeat 1
# weights: 103
initial value 101.140941
iter 10 value 94.466063
iter 20 value 92.382723
iter 30 value 90.913272
iter 40 value 88.313679
iter 50 value 87.874369
iter 60 value 87.649232
iter 70 value 85.929596
iter 80 value 81.971748
iter 90 value 81.715729
iter 100 value 81.411460
final value 81.411460
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 101.466877
iter 10 value 94.415485
iter 20 value 85.807221
iter 30 value 84.721647
iter 40 value 83.930837
iter 50 value 83.916308
iter 60 value 83.891918
iter 70 value 83.755301
final value 83.744113
converged
Fitting Repeat 3
# weights: 103
initial value 103.774003
iter 10 value 94.373728
iter 20 value 88.807856
iter 30 value 85.065633
iter 40 value 84.454144
iter 50 value 83.993182
iter 60 value 83.882373
iter 70 value 83.756418
iter 80 value 83.744113
iter 80 value 83.744112
iter 80 value 83.744112
final value 83.744112
converged
Fitting Repeat 4
# weights: 103
initial value 101.634491
iter 10 value 94.495259
iter 20 value 86.889458
iter 30 value 84.700418
iter 40 value 83.927672
iter 50 value 83.680811
iter 60 value 83.598747
iter 70 value 83.591996
iter 80 value 83.568906
iter 90 value 82.948084
iter 100 value 81.405374
final value 81.405374
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 104.572087
iter 10 value 94.433907
iter 20 value 85.002475
iter 30 value 84.487249
iter 40 value 84.388143
iter 50 value 84.261887
iter 60 value 83.080231
iter 70 value 82.618341
final value 82.617865
converged
Fitting Repeat 1
# weights: 305
initial value 108.663707
iter 10 value 94.435248
iter 20 value 86.112344
iter 30 value 84.389658
iter 40 value 83.798521
iter 50 value 82.025653
iter 60 value 81.041480
iter 70 value 80.638000
iter 80 value 80.480005
iter 90 value 80.398187
iter 100 value 80.376573
final value 80.376573
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.158480
iter 10 value 94.197629
iter 20 value 93.501570
iter 30 value 93.451673
iter 40 value 91.282091
iter 50 value 89.517670
iter 60 value 86.690263
iter 70 value 82.514601
iter 80 value 81.467332
iter 90 value 81.086990
iter 100 value 80.630893
final value 80.630893
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.502063
iter 10 value 94.790973
iter 20 value 91.006593
iter 30 value 86.391451
iter 40 value 84.058735
iter 50 value 83.535226
iter 60 value 83.189862
iter 70 value 82.572761
iter 80 value 82.203670
iter 90 value 81.115567
iter 100 value 80.898386
final value 80.898386
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.421514
iter 10 value 94.520178
iter 20 value 93.907728
iter 30 value 85.213173
iter 40 value 84.795743
iter 50 value 84.095664
iter 60 value 80.562628
iter 70 value 79.915786
iter 80 value 79.812233
iter 90 value 79.787266
iter 100 value 79.543307
final value 79.543307
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 110.322939
iter 10 value 96.257612
iter 20 value 94.574905
iter 30 value 85.157191
iter 40 value 84.831321
iter 50 value 84.688692
iter 60 value 83.597847
iter 70 value 81.353585
iter 80 value 80.221177
iter 90 value 79.933897
iter 100 value 79.788978
final value 79.788978
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.035702
iter 10 value 94.766025
iter 20 value 94.484563
iter 30 value 94.156281
iter 40 value 88.837921
iter 50 value 85.832321
iter 60 value 85.086437
iter 70 value 84.803007
iter 80 value 83.686412
iter 90 value 81.747549
iter 100 value 81.078759
final value 81.078759
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 108.692466
iter 10 value 98.401376
iter 20 value 94.557054
iter 30 value 94.492878
iter 40 value 88.039758
iter 50 value 85.979178
iter 60 value 84.010273
iter 70 value 83.749065
iter 80 value 81.311420
iter 90 value 80.436123
iter 100 value 80.086929
final value 80.086929
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.775627
iter 10 value 93.650981
iter 20 value 85.338635
iter 30 value 84.487629
iter 40 value 81.529193
iter 50 value 80.951734
iter 60 value 80.671757
iter 70 value 80.422416
iter 80 value 79.937038
iter 90 value 79.703262
iter 100 value 79.619294
final value 79.619294
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 110.227963
iter 10 value 94.488125
iter 20 value 87.752168
iter 30 value 86.543106
iter 40 value 85.320392
iter 50 value 84.636446
iter 60 value 84.409394
iter 70 value 82.116103
iter 80 value 81.424152
iter 90 value 80.459547
iter 100 value 79.976271
final value 79.976271
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.735649
iter 10 value 95.409965
iter 20 value 90.034181
iter 30 value 83.085972
iter 40 value 82.005573
iter 50 value 81.643788
iter 60 value 80.541501
iter 70 value 79.864564
iter 80 value 79.351898
iter 90 value 79.216657
iter 100 value 79.161704
final value 79.161704
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.606778
final value 94.485728
converged
Fitting Repeat 2
# weights: 103
initial value 95.139927
final value 94.485696
converged
Fitting Repeat 3
# weights: 103
initial value 96.077051
final value 94.485805
converged
Fitting Repeat 4
# weights: 103
initial value 97.659317
final value 94.485922
converged
Fitting Repeat 5
# weights: 103
initial value 101.807637
final value 94.485761
converged
Fitting Repeat 1
# weights: 305
initial value 95.834183
iter 10 value 94.293736
final value 94.293566
converged
Fitting Repeat 2
# weights: 305
initial value 96.118399
iter 10 value 83.419817
iter 20 value 83.338810
iter 30 value 83.336752
iter 40 value 83.334671
iter 50 value 83.214353
iter 60 value 83.055972
final value 83.055292
converged
Fitting Repeat 3
# weights: 305
initial value 94.708452
iter 10 value 94.485408
final value 94.484220
converged
Fitting Repeat 4
# weights: 305
initial value 99.945295
iter 10 value 93.824344
iter 20 value 93.305137
iter 30 value 93.289550
iter 40 value 93.278091
iter 50 value 93.277253
iter 50 value 93.277252
final value 93.277250
converged
Fitting Repeat 5
# weights: 305
initial value 98.497625
iter 10 value 94.488475
iter 20 value 94.475516
iter 30 value 90.618852
iter 40 value 84.833906
final value 84.739287
converged
Fitting Repeat 1
# weights: 507
initial value 109.136380
iter 10 value 90.270520
iter 20 value 87.503608
iter 30 value 87.389896
iter 40 value 85.373595
iter 50 value 85.318573
iter 60 value 85.317487
final value 85.317342
converged
Fitting Repeat 2
# weights: 507
initial value 97.343912
iter 10 value 94.451313
iter 20 value 93.698019
iter 30 value 84.529156
iter 40 value 80.381750
iter 50 value 80.321246
iter 60 value 80.321078
iter 70 value 80.320157
final value 80.319876
converged
Fitting Repeat 3
# weights: 507
initial value 97.492969
iter 10 value 92.795923
iter 20 value 92.793569
iter 30 value 91.533829
iter 40 value 85.010498
iter 50 value 84.958387
iter 60 value 84.956183
iter 70 value 84.955792
iter 70 value 84.955792
final value 84.955792
converged
Fitting Repeat 4
# weights: 507
initial value 99.934787
iter 10 value 94.450985
iter 20 value 92.418655
iter 30 value 91.200070
iter 40 value 85.741586
iter 50 value 80.732719
iter 60 value 80.575276
iter 70 value 80.403761
iter 80 value 80.402170
iter 90 value 79.669652
iter 100 value 79.347596
final value 79.347596
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.197432
iter 10 value 94.491784
iter 20 value 94.167941
iter 30 value 85.244922
iter 40 value 85.240421
iter 50 value 85.236718
iter 60 value 85.234977
iter 70 value 83.582812
iter 80 value 83.187693
iter 90 value 82.546919
iter 100 value 82.080655
final value 82.080655
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.941717
final value 93.637380
converged
Fitting Repeat 2
# weights: 103
initial value 98.234845
final value 94.275362
converged
Fitting Repeat 3
# weights: 103
initial value 96.173981
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 99.603192
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 106.829231
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 102.334155
final value 94.275362
converged
Fitting Repeat 2
# weights: 305
initial value 96.600048
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 96.576570
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 107.034076
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 94.979374
final value 94.461207
converged
Fitting Repeat 1
# weights: 507
initial value 100.966807
iter 10 value 92.008364
iter 20 value 90.934276
iter 30 value 90.743657
final value 90.743596
converged
Fitting Repeat 2
# weights: 507
initial value 99.313148
final value 94.275362
converged
Fitting Repeat 3
# weights: 507
initial value 110.189350
final value 93.942286
converged
Fitting Repeat 4
# weights: 507
initial value 96.783053
final value 94.275362
converged
Fitting Repeat 5
# weights: 507
initial value 106.947402
final value 94.275362
converged
Fitting Repeat 1
# weights: 103
initial value 103.096604
iter 10 value 94.477104
iter 20 value 94.319769
iter 30 value 94.065778
iter 40 value 93.343655
iter 50 value 91.489951
iter 60 value 86.699014
iter 70 value 85.663951
iter 80 value 85.205112
iter 90 value 82.679682
iter 100 value 80.566650
final value 80.566650
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 114.980059
iter 10 value 94.458122
iter 20 value 93.521395
iter 30 value 93.398149
iter 40 value 93.391594
iter 50 value 93.384660
iter 60 value 85.125476
iter 70 value 84.060450
iter 80 value 83.549108
iter 90 value 83.208622
iter 100 value 82.200980
final value 82.200980
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 102.519604
iter 10 value 92.981336
iter 20 value 86.034814
iter 30 value 85.478487
iter 40 value 84.926197
iter 50 value 83.430983
iter 60 value 82.605104
iter 70 value 81.683309
iter 80 value 80.437052
iter 90 value 80.333923
final value 80.333865
converged
Fitting Repeat 4
# weights: 103
initial value 110.422739
iter 10 value 94.482545
iter 20 value 93.742710
iter 30 value 92.992577
iter 40 value 89.139681
iter 50 value 83.665639
iter 60 value 82.996006
iter 70 value 81.865854
iter 80 value 81.244150
iter 90 value 80.745299
iter 100 value 80.550805
final value 80.550805
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 100.496125
iter 10 value 94.436960
iter 20 value 93.788798
iter 30 value 93.731776
iter 40 value 93.702697
iter 50 value 92.360192
iter 60 value 87.409633
iter 70 value 85.164552
iter 80 value 84.257311
iter 90 value 83.040248
iter 100 value 82.064346
final value 82.064346
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 100.559949
iter 10 value 94.297894
iter 20 value 88.608444
iter 30 value 85.336972
iter 40 value 83.962603
iter 50 value 82.226473
iter 60 value 81.815769
iter 70 value 80.480407
iter 80 value 80.426027
iter 90 value 80.259884
iter 100 value 79.853249
final value 79.853249
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.261950
iter 10 value 94.299452
iter 20 value 86.650559
iter 30 value 83.937076
iter 40 value 81.551827
iter 50 value 80.301108
iter 60 value 80.187438
iter 70 value 79.774778
iter 80 value 79.550726
iter 90 value 79.045132
iter 100 value 78.942316
final value 78.942316
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.683981
iter 10 value 95.041648
iter 20 value 92.329600
iter 30 value 91.141382
iter 40 value 87.262790
iter 50 value 86.952883
iter 60 value 84.657919
iter 70 value 81.539275
iter 80 value 80.032117
iter 90 value 79.500559
iter 100 value 79.293868
final value 79.293868
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.828296
iter 10 value 93.357820
iter 20 value 85.420580
iter 30 value 85.128507
iter 40 value 83.293260
iter 50 value 82.826666
iter 60 value 81.715860
iter 70 value 80.253203
iter 80 value 79.606157
iter 90 value 79.568985
iter 100 value 79.505712
final value 79.505712
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 113.624777
iter 10 value 94.461315
iter 20 value 89.166041
iter 30 value 86.878240
iter 40 value 84.981893
iter 50 value 82.162587
iter 60 value 81.561913
iter 70 value 81.371735
iter 80 value 81.090558
iter 90 value 80.744665
iter 100 value 80.460055
final value 80.460055
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.366741
iter 10 value 94.208778
iter 20 value 87.984917
iter 30 value 85.405664
iter 40 value 84.910542
iter 50 value 84.082777
iter 60 value 81.023058
iter 70 value 80.013725
iter 80 value 79.107275
iter 90 value 78.971393
iter 100 value 78.900891
final value 78.900891
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 109.522030
iter 10 value 94.623075
iter 20 value 91.845779
iter 30 value 87.304663
iter 40 value 83.987190
iter 50 value 83.371305
iter 60 value 82.806107
iter 70 value 81.221883
iter 80 value 80.412220
iter 90 value 80.268832
iter 100 value 80.071907
final value 80.071907
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.817286
iter 10 value 98.592490
iter 20 value 93.564725
iter 30 value 86.516253
iter 40 value 85.444960
iter 50 value 82.507178
iter 60 value 81.594456
iter 70 value 81.073057
iter 80 value 80.552421
iter 90 value 80.267108
iter 100 value 80.108858
final value 80.108858
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.781539
iter 10 value 95.260768
iter 20 value 89.556919
iter 30 value 86.388616
iter 40 value 82.889254
iter 50 value 80.591667
iter 60 value 79.905807
iter 70 value 79.407755
iter 80 value 79.365750
iter 90 value 79.208233
iter 100 value 79.050549
final value 79.050549
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.981453
iter 10 value 93.361774
iter 20 value 91.987195
iter 30 value 91.054838
iter 40 value 89.594239
iter 50 value 86.398347
iter 60 value 82.591448
iter 70 value 81.565446
iter 80 value 80.267785
iter 90 value 79.885509
iter 100 value 79.669510
final value 79.669510
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.908724
iter 10 value 94.486116
iter 20 value 94.484217
final value 94.484213
converged
Fitting Repeat 2
# weights: 103
initial value 98.668983
iter 10 value 92.126789
iter 20 value 91.335790
iter 30 value 91.311123
final value 91.307962
converged
Fitting Repeat 3
# weights: 103
initial value 121.141421
iter 10 value 94.485800
iter 20 value 94.087175
iter 30 value 86.634045
iter 40 value 86.631159
iter 50 value 86.628589
iter 60 value 86.627748
final value 86.627746
converged
Fitting Repeat 4
# weights: 103
initial value 105.100871
final value 94.486020
converged
Fitting Repeat 5
# weights: 103
initial value 117.285345
final value 94.485929
converged
Fitting Repeat 1
# weights: 305
initial value 95.564537
iter 10 value 87.792793
iter 20 value 84.919927
iter 30 value 84.197667
iter 40 value 83.934882
iter 50 value 83.717122
iter 60 value 83.712365
iter 70 value 83.711731
iter 80 value 83.711418
iter 80 value 83.711418
final value 83.711418
converged
Fitting Repeat 2
# weights: 305
initial value 96.729512
iter 10 value 94.488963
iter 20 value 94.465244
iter 30 value 94.462221
iter 40 value 84.085201
iter 50 value 83.602138
iter 60 value 83.440981
iter 70 value 83.374536
iter 70 value 83.374536
iter 70 value 83.374536
final value 83.374536
converged
Fitting Repeat 3
# weights: 305
initial value 105.001960
iter 10 value 94.479248
iter 20 value 94.347123
iter 30 value 93.654128
iter 40 value 93.493280
final value 93.493244
converged
Fitting Repeat 4
# weights: 305
initial value 96.397466
iter 10 value 94.488402
iter 20 value 94.177014
iter 30 value 87.337379
iter 40 value 85.937222
iter 50 value 85.935180
iter 60 value 85.903058
iter 70 value 85.500118
iter 80 value 85.498868
iter 80 value 85.498867
final value 85.498867
converged
Fitting Repeat 5
# weights: 305
initial value 114.389730
iter 10 value 94.488950
iter 20 value 94.484288
iter 30 value 94.008512
iter 40 value 86.730059
iter 50 value 84.381631
iter 60 value 84.324981
iter 70 value 84.278734
iter 80 value 84.242783
iter 90 value 84.242636
final value 84.242537
converged
Fitting Repeat 1
# weights: 507
initial value 96.209206
iter 10 value 94.474637
iter 20 value 94.338433
iter 30 value 87.990761
iter 40 value 86.006214
iter 50 value 84.095781
iter 60 value 84.006952
final value 84.005656
converged
Fitting Repeat 2
# weights: 507
initial value 107.856444
iter 10 value 88.280998
iter 20 value 87.118206
iter 30 value 86.953405
iter 40 value 86.945843
iter 50 value 86.888765
final value 86.888506
converged
Fitting Repeat 3
# weights: 507
initial value 116.898590
iter 10 value 93.930981
iter 20 value 93.925804
iter 30 value 93.922890
iter 40 value 93.639717
iter 50 value 93.542743
final value 93.542732
converged
Fitting Repeat 4
# weights: 507
initial value 131.673871
iter 10 value 94.574678
iter 20 value 88.997890
iter 30 value 84.847412
iter 40 value 84.822423
final value 84.821295
converged
Fitting Repeat 5
# weights: 507
initial value 111.650320
iter 10 value 92.280374
iter 20 value 85.115244
iter 30 value 84.939348
iter 40 value 83.638262
iter 50 value 83.636267
iter 60 value 83.610345
iter 70 value 82.993040
iter 80 value 82.186980
iter 90 value 81.346589
iter 100 value 81.272882
final value 81.272882
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.714833
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 95.687289
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.242715
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.855810
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 101.616972
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 109.841043
final value 93.915746
converged
Fitting Repeat 2
# weights: 305
initial value 98.845892
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 99.314813
final value 93.763751
converged
Fitting Repeat 4
# weights: 305
initial value 104.417618
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 98.657305
final value 93.915746
converged
Fitting Repeat 1
# weights: 507
initial value 104.341685
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 96.252659
iter 10 value 94.053144
iter 20 value 94.047362
iter 30 value 93.928469
final value 93.912644
converged
Fitting Repeat 3
# weights: 507
initial value 100.666501
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 112.183089
final value 93.912644
converged
Fitting Repeat 5
# weights: 507
initial value 98.810732
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 101.469736
iter 10 value 93.656661
iter 20 value 90.353937
iter 30 value 86.579029
iter 40 value 85.500003
iter 50 value 84.417197
iter 60 value 83.453427
iter 70 value 83.060393
iter 80 value 82.990334
iter 90 value 82.866951
iter 100 value 82.816514
final value 82.816514
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 98.404693
iter 10 value 93.795241
iter 20 value 93.087104
iter 30 value 92.037880
iter 40 value 91.521731
iter 50 value 90.839394
iter 60 value 86.340627
iter 70 value 83.661246
iter 80 value 83.460446
iter 90 value 83.077252
iter 100 value 82.895230
final value 82.895230
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 103.957912
iter 10 value 94.357623
iter 20 value 94.048064
iter 30 value 93.815729
iter 40 value 93.797568
iter 50 value 92.971140
iter 60 value 87.729174
iter 70 value 87.120599
iter 80 value 86.406173
iter 90 value 85.906827
iter 100 value 85.767624
final value 85.767624
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 98.511458
iter 10 value 94.062808
iter 20 value 94.057250
iter 30 value 93.710074
iter 40 value 93.528086
iter 50 value 93.490614
iter 60 value 90.280817
iter 70 value 89.826257
iter 80 value 88.670152
iter 90 value 86.262894
iter 100 value 85.512295
final value 85.512295
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 96.756142
iter 10 value 93.900527
iter 20 value 87.459912
iter 30 value 85.974611
iter 40 value 85.221355
iter 50 value 85.170949
iter 60 value 85.158090
final value 85.157701
converged
Fitting Repeat 1
# weights: 305
initial value 111.430712
iter 10 value 94.256061
iter 20 value 86.167336
iter 30 value 85.632363
iter 40 value 85.463720
iter 50 value 85.404368
iter 60 value 84.624890
iter 70 value 83.180808
iter 80 value 82.780036
iter 90 value 82.500575
iter 100 value 82.385244
final value 82.385244
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.432863
iter 10 value 95.956036
iter 20 value 94.574285
iter 30 value 90.574030
iter 40 value 85.370275
iter 50 value 84.699408
iter 60 value 83.535191
iter 70 value 83.341360
iter 80 value 82.893925
iter 90 value 82.625655
iter 100 value 82.529322
final value 82.529322
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.738990
iter 10 value 90.366747
iter 20 value 87.132557
iter 30 value 86.557292
iter 40 value 84.365256
iter 50 value 83.775997
iter 60 value 82.826762
iter 70 value 82.406456
iter 80 value 81.983877
iter 90 value 81.694216
iter 100 value 81.639272
final value 81.639272
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.257085
iter 10 value 94.436599
iter 20 value 86.365154
iter 30 value 85.249840
iter 40 value 84.972153
iter 50 value 83.762294
iter 60 value 83.255481
iter 70 value 83.143237
iter 80 value 82.899008
iter 90 value 82.570639
iter 100 value 82.204715
final value 82.204715
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.741748
iter 10 value 94.018556
iter 20 value 92.733547
iter 30 value 86.368469
iter 40 value 85.438431
iter 50 value 85.198947
iter 60 value 84.712456
iter 70 value 83.620417
iter 80 value 83.106787
iter 90 value 82.982107
iter 100 value 82.916043
final value 82.916043
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 102.580334
iter 10 value 97.143579
iter 20 value 90.282003
iter 30 value 85.139377
iter 40 value 84.853297
iter 50 value 84.058149
iter 60 value 83.389228
iter 70 value 82.338581
iter 80 value 82.094345
iter 90 value 81.846628
iter 100 value 81.723299
final value 81.723299
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.258791
iter 10 value 93.889800
iter 20 value 86.009715
iter 30 value 84.814558
iter 40 value 82.861651
iter 50 value 82.287880
iter 60 value 82.009839
iter 70 value 81.863130
iter 80 value 81.787912
iter 90 value 81.732850
iter 100 value 81.609235
final value 81.609235
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.524029
iter 10 value 94.331024
iter 20 value 88.816582
iter 30 value 85.870150
iter 40 value 85.678559
iter 50 value 85.282379
iter 60 value 84.935230
iter 70 value 84.388780
iter 80 value 83.605258
iter 90 value 83.049198
iter 100 value 82.423680
final value 82.423680
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.450730
iter 10 value 93.402868
iter 20 value 87.087107
iter 30 value 86.800717
iter 40 value 86.188776
iter 50 value 85.509344
iter 60 value 84.859809
iter 70 value 84.156827
iter 80 value 83.670528
iter 90 value 82.372496
iter 100 value 81.878157
final value 81.878157
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 117.454645
iter 10 value 94.467591
iter 20 value 88.157832
iter 30 value 85.980663
iter 40 value 84.399019
iter 50 value 83.142303
iter 60 value 82.642206
iter 70 value 81.857940
iter 80 value 81.580258
iter 90 value 81.527892
iter 100 value 81.476724
final value 81.476724
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 113.162829
iter 10 value 94.054817
iter 20 value 94.052924
iter 20 value 94.052924
iter 20 value 94.052924
final value 94.052924
converged
Fitting Repeat 2
# weights: 103
initial value 96.186236
iter 10 value 89.357157
iter 20 value 84.625743
iter 30 value 84.620500
iter 40 value 84.332155
iter 50 value 83.770816
iter 60 value 83.337655
final value 83.337218
converged
Fitting Repeat 3
# weights: 103
initial value 97.735126
final value 94.054783
converged
Fitting Repeat 4
# weights: 103
initial value 98.736728
final value 94.055448
converged
Fitting Repeat 5
# weights: 103
initial value 113.983687
final value 94.054580
converged
Fitting Repeat 1
# weights: 305
initial value 102.973633
iter 10 value 94.058097
final value 94.053186
converged
Fitting Repeat 2
# weights: 305
initial value 105.784861
iter 10 value 94.057650
iter 20 value 94.052952
final value 94.052950
converged
Fitting Repeat 3
# weights: 305
initial value 107.244993
iter 10 value 94.058156
iter 20 value 93.999331
iter 30 value 92.833556
iter 40 value 92.806413
iter 50 value 92.805720
iter 60 value 92.698847
iter 70 value 92.698190
final value 92.698041
converged
Fitting Repeat 4
# weights: 305
initial value 97.970050
iter 10 value 93.771278
iter 20 value 93.059865
iter 30 value 84.791749
iter 40 value 84.789235
iter 50 value 84.787955
iter 60 value 84.765476
iter 70 value 83.841330
iter 80 value 83.828057
iter 90 value 83.805450
iter 100 value 83.746263
final value 83.746263
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.734404
iter 10 value 94.057835
iter 20 value 94.049565
iter 30 value 87.828424
final value 87.824515
converged
Fitting Repeat 1
# weights: 507
initial value 99.569769
iter 10 value 94.060315
iter 20 value 89.797642
iter 30 value 86.231920
iter 40 value 85.793256
final value 85.792372
converged
Fitting Repeat 2
# weights: 507
initial value 103.752449
iter 10 value 94.059009
iter 20 value 94.029839
final value 93.912805
converged
Fitting Repeat 3
# weights: 507
initial value 119.979006
iter 10 value 94.061630
iter 20 value 94.052997
iter 30 value 91.044510
iter 40 value 85.707833
iter 50 value 85.304106
iter 60 value 82.815966
iter 70 value 82.255557
iter 80 value 82.107739
iter 90 value 81.963719
iter 100 value 81.955278
final value 81.955278
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.247828
iter 10 value 93.017432
iter 20 value 92.885392
iter 30 value 92.881494
iter 40 value 86.608921
iter 50 value 86.560000
iter 60 value 86.424828
iter 70 value 86.422495
iter 80 value 84.469651
iter 90 value 84.407281
final value 84.407064
converged
Fitting Repeat 5
# weights: 507
initial value 99.586214
iter 10 value 93.489974
iter 20 value 93.430874
iter 30 value 93.425103
iter 40 value 91.018554
final value 86.619600
converged
Fitting Repeat 1
# weights: 103
initial value 95.384633
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.364105
iter 10 value 94.026559
final value 94.026542
converged
Fitting Repeat 3
# weights: 103
initial value 96.391422
final value 94.026542
converged
Fitting Repeat 4
# weights: 103
initial value 94.502459
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.420946
iter 10 value 94.028986
final value 94.026542
converged
Fitting Repeat 1
# weights: 305
initial value 115.945029
final value 94.026542
converged
Fitting Repeat 2
# weights: 305
initial value 101.455367
iter 10 value 94.265747
iter 20 value 94.264862
final value 94.264858
converged
Fitting Repeat 3
# weights: 305
initial value 101.816517
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 95.298401
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 105.073045
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 106.950721
iter 10 value 93.143619
iter 20 value 89.658977
final value 89.656973
converged
Fitting Repeat 2
# weights: 507
initial value 99.998745
iter 10 value 94.101715
iter 20 value 94.007925
final value 94.007667
converged
Fitting Repeat 3
# weights: 507
initial value 95.355593
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 123.019039
iter 10 value 94.484211
iter 10 value 94.484211
iter 10 value 94.484211
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 112.554610
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 96.261530
iter 10 value 94.262760
iter 20 value 92.896392
iter 30 value 92.669362
iter 40 value 92.631560
final value 92.631296
converged
Fitting Repeat 2
# weights: 103
initial value 99.772146
iter 10 value 94.488697
iter 20 value 94.390510
iter 30 value 94.215112
iter 40 value 93.490106
iter 50 value 91.769255
iter 60 value 89.300618
iter 70 value 89.017957
iter 80 value 88.645832
iter 90 value 84.079562
iter 100 value 82.918039
final value 82.918039
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 99.088761
iter 10 value 94.488509
iter 20 value 94.135677
iter 30 value 94.126019
iter 40 value 94.074490
iter 50 value 86.521557
iter 60 value 85.698545
iter 70 value 85.421537
iter 80 value 85.281912
iter 90 value 83.889273
iter 100 value 83.275067
final value 83.275067
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 98.129565
iter 10 value 94.461116
iter 20 value 93.335151
iter 30 value 93.260569
iter 40 value 93.211415
iter 50 value 93.067301
iter 60 value 89.802294
iter 70 value 88.198079
iter 80 value 87.495417
iter 90 value 85.895864
iter 100 value 85.105586
final value 85.105586
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 99.099351
iter 10 value 94.505957
iter 20 value 92.150079
iter 30 value 90.956304
iter 40 value 88.993458
iter 50 value 86.186731
iter 60 value 84.955620
iter 70 value 84.179751
iter 80 value 83.843577
iter 90 value 83.841877
final value 83.841852
converged
Fitting Repeat 1
# weights: 305
initial value 123.366932
iter 10 value 94.620843
iter 20 value 94.535372
iter 30 value 89.389831
iter 40 value 88.097685
iter 50 value 84.684430
iter 60 value 83.218299
iter 70 value 82.273211
iter 80 value 81.901187
iter 90 value 81.619076
iter 100 value 81.525861
final value 81.525861
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.541137
iter 10 value 94.452977
iter 20 value 94.143778
iter 30 value 92.976214
iter 40 value 88.210775
iter 50 value 84.222261
iter 60 value 82.222411
iter 70 value 81.834062
iter 80 value 81.748586
iter 90 value 81.522831
iter 100 value 81.312549
final value 81.312549
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.759781
iter 10 value 94.204807
iter 20 value 89.335888
iter 30 value 86.667199
iter 40 value 84.709948
iter 50 value 83.897473
iter 60 value 83.758109
iter 70 value 83.730698
iter 80 value 83.302543
iter 90 value 82.680152
iter 100 value 81.711432
final value 81.711432
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 108.943766
iter 10 value 95.119257
iter 20 value 94.597230
iter 30 value 94.192194
iter 40 value 89.849328
iter 50 value 86.583509
iter 60 value 85.769728
iter 70 value 85.488359
iter 80 value 84.824253
iter 90 value 84.656293
iter 100 value 84.181913
final value 84.181913
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 122.697780
iter 10 value 94.627800
iter 20 value 89.575233
iter 30 value 85.529218
iter 40 value 85.199191
iter 50 value 84.918103
iter 60 value 84.862474
iter 70 value 84.747632
iter 80 value 84.593095
iter 90 value 84.073549
iter 100 value 83.982460
final value 83.982460
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 129.309511
iter 10 value 94.856316
iter 20 value 94.442890
iter 30 value 91.415555
iter 40 value 88.699152
iter 50 value 83.785993
iter 60 value 82.407296
iter 70 value 81.801913
iter 80 value 81.658048
iter 90 value 81.533365
iter 100 value 81.412137
final value 81.412137
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 119.579883
iter 10 value 94.323556
iter 20 value 86.839204
iter 30 value 85.983686
iter 40 value 85.650497
iter 50 value 85.336972
iter 60 value 84.885360
iter 70 value 82.942603
iter 80 value 81.674011
iter 90 value 81.345154
iter 100 value 81.254935
final value 81.254935
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.524782
iter 10 value 95.252074
iter 20 value 94.191625
iter 30 value 90.139833
iter 40 value 84.278636
iter 50 value 82.685911
iter 60 value 81.947780
iter 70 value 81.611590
iter 80 value 81.267007
iter 90 value 81.221259
iter 100 value 80.990898
final value 80.990898
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 133.560100
iter 10 value 94.402162
iter 20 value 91.055380
iter 30 value 87.073716
iter 40 value 83.767026
iter 50 value 82.863426
iter 60 value 82.225625
iter 70 value 82.100822
iter 80 value 81.837219
iter 90 value 81.673335
iter 100 value 81.412288
final value 81.412288
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.026833
iter 10 value 96.012856
iter 20 value 92.967480
iter 30 value 91.629587
iter 40 value 85.273614
iter 50 value 84.436730
iter 60 value 84.016118
iter 70 value 83.978494
iter 80 value 83.944418
iter 90 value 83.833390
iter 100 value 83.618662
final value 83.618662
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 114.992776
iter 10 value 94.038692
iter 20 value 94.028239
iter 30 value 93.937587
iter 40 value 89.042662
iter 50 value 88.832319
iter 60 value 88.740597
iter 70 value 88.301692
final value 88.301071
converged
Fitting Repeat 2
# weights: 103
initial value 99.030735
iter 10 value 92.616427
iter 20 value 92.615636
iter 30 value 92.614913
iter 40 value 92.614713
iter 50 value 92.143430
iter 60 value 92.133010
iter 70 value 92.132886
final value 92.132861
converged
Fitting Repeat 3
# weights: 103
initial value 97.946462
final value 94.485832
converged
Fitting Repeat 4
# weights: 103
initial value 96.872719
final value 94.485813
converged
Fitting Repeat 5
# weights: 103
initial value 97.776552
final value 94.486019
converged
Fitting Repeat 1
# weights: 305
initial value 98.220132
iter 10 value 94.031816
iter 20 value 94.020492
iter 30 value 93.970103
iter 40 value 93.969657
final value 93.969590
converged
Fitting Repeat 2
# weights: 305
initial value 108.155865
iter 10 value 94.031902
iter 20 value 94.025847
iter 30 value 93.970279
final value 93.969497
converged
Fitting Repeat 3
# weights: 305
initial value 122.883601
iter 10 value 94.032015
iter 20 value 94.029854
iter 30 value 93.837447
iter 40 value 92.295028
iter 50 value 92.233624
final value 92.233542
converged
Fitting Repeat 4
# weights: 305
initial value 97.914359
iter 10 value 94.489345
iter 20 value 94.182705
iter 30 value 84.732594
iter 40 value 84.730872
iter 50 value 84.579134
iter 60 value 84.557379
iter 70 value 84.478192
iter 80 value 84.474861
iter 90 value 83.645509
iter 100 value 82.771663
final value 82.771663
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 111.118847
iter 10 value 94.489201
iter 20 value 89.283297
final value 89.213100
converged
Fitting Repeat 1
# weights: 507
initial value 106.230261
iter 10 value 94.053760
iter 20 value 94.038138
iter 30 value 93.969970
iter 40 value 93.964629
iter 50 value 86.243247
iter 60 value 83.235669
iter 70 value 82.803769
iter 80 value 82.769516
iter 90 value 82.764254
iter 100 value 82.289036
final value 82.289036
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 100.715434
iter 10 value 94.492437
iter 20 value 94.484553
iter 30 value 94.027005
final value 94.026958
converged
Fitting Repeat 3
# weights: 507
initial value 97.916919
iter 10 value 93.438837
iter 20 value 93.431674
iter 30 value 92.912772
iter 40 value 92.865111
iter 50 value 92.863769
final value 92.863520
converged
Fitting Repeat 4
# weights: 507
initial value 101.870875
iter 10 value 94.035442
iter 20 value 93.982849
iter 30 value 87.249547
iter 40 value 82.729931
iter 50 value 82.266345
iter 60 value 82.189857
iter 70 value 82.151901
iter 80 value 82.119187
iter 90 value 82.117247
iter 100 value 82.066130
final value 82.066130
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.145495
iter 10 value 94.493608
iter 20 value 94.485248
iter 30 value 87.011366
iter 40 value 86.122910
iter 50 value 85.846906
iter 60 value 85.841814
final value 85.838209
converged
Fitting Repeat 1
# weights: 103
initial value 95.795896
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 101.757292
final value 93.904720
converged
Fitting Repeat 3
# weights: 103
initial value 95.395834
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 110.030986
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 98.127201
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 103.029551
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 102.099108
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 98.358564
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 98.341023
iter 10 value 94.038791
final value 94.038251
converged
Fitting Repeat 5
# weights: 305
initial value 110.643033
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 97.723412
final value 94.025289
converged
Fitting Repeat 2
# weights: 507
initial value 98.373248
final value 93.890110
converged
Fitting Repeat 3
# weights: 507
initial value 95.896780
final value 94.038251
converged
Fitting Repeat 4
# weights: 507
initial value 95.250272
iter 10 value 94.028421
final value 94.027933
converged
Fitting Repeat 5
# weights: 507
initial value 101.224587
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 102.070660
iter 10 value 94.056657
iter 20 value 91.853483
iter 30 value 88.164690
iter 40 value 85.866211
iter 50 value 85.186975
iter 60 value 84.784035
iter 70 value 84.041587
iter 80 value 83.815563
iter 90 value 83.561199
final value 83.550200
converged
Fitting Repeat 2
# weights: 103
initial value 113.094764
iter 10 value 95.311025
iter 20 value 94.044921
iter 30 value 93.318988
iter 40 value 86.860210
iter 50 value 85.886590
iter 60 value 85.675159
iter 70 value 83.337776
iter 80 value 82.279046
iter 90 value 81.299188
iter 100 value 80.797317
final value 80.797317
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 104.973617
iter 10 value 94.134193
iter 20 value 93.763270
iter 30 value 88.660307
iter 40 value 87.351706
iter 50 value 87.037147
iter 60 value 85.030985
iter 70 value 84.459739
iter 80 value 83.682222
iter 90 value 83.551169
final value 83.550200
converged
Fitting Repeat 4
# weights: 103
initial value 96.722442
iter 10 value 94.055194
iter 20 value 94.025865
iter 30 value 91.482588
iter 40 value 88.514242
iter 50 value 87.086787
iter 60 value 86.065674
iter 70 value 83.770087
iter 80 value 83.467506
iter 90 value 83.378515
iter 100 value 82.902232
final value 82.902232
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 117.253706
iter 10 value 94.102610
iter 20 value 94.056815
iter 30 value 94.010883
iter 40 value 87.823582
iter 50 value 87.075829
iter 60 value 86.620013
iter 70 value 86.472851
iter 80 value 86.306983
iter 90 value 83.637960
iter 100 value 83.619069
final value 83.619069
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 115.701048
iter 10 value 94.054867
iter 20 value 85.762296
iter 30 value 83.896581
iter 40 value 83.431669
iter 50 value 83.339702
iter 60 value 82.937696
iter 70 value 82.705149
iter 80 value 80.864105
iter 90 value 80.490553
iter 100 value 80.150002
final value 80.150002
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 108.159081
iter 10 value 94.052169
iter 20 value 88.515815
iter 30 value 85.151835
iter 40 value 84.979653
iter 50 value 84.363689
iter 60 value 81.371941
iter 70 value 81.316845
iter 80 value 81.190222
iter 90 value 81.073112
iter 100 value 80.859869
final value 80.859869
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.670208
iter 10 value 89.049470
iter 20 value 84.993593
iter 30 value 84.890408
iter 40 value 84.290361
iter 50 value 82.631955
iter 60 value 80.800688
iter 70 value 80.197557
iter 80 value 79.934422
iter 90 value 79.603464
iter 100 value 78.869149
final value 78.869149
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.965181
iter 10 value 92.898798
iter 20 value 87.753891
iter 30 value 84.618511
iter 40 value 84.161249
iter 50 value 83.868587
iter 60 value 83.823096
iter 70 value 83.717945
iter 80 value 83.637980
iter 90 value 83.256261
iter 100 value 80.966351
final value 80.966351
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.493970
iter 10 value 94.052555
iter 20 value 93.574645
iter 30 value 89.429206
iter 40 value 88.382327
iter 50 value 88.037415
iter 60 value 86.924903
iter 70 value 84.977021
iter 80 value 81.835512
iter 90 value 81.119153
iter 100 value 80.933195
final value 80.933195
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.449021
iter 10 value 97.106584
iter 20 value 88.342072
iter 30 value 84.668976
iter 40 value 82.418398
iter 50 value 81.800294
iter 60 value 81.381463
iter 70 value 81.254827
iter 80 value 81.100301
iter 90 value 80.812596
iter 100 value 79.997608
final value 79.997608
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.721711
iter 10 value 94.125261
iter 20 value 88.144172
iter 30 value 85.457933
iter 40 value 83.243288
iter 50 value 81.197974
iter 60 value 80.577886
iter 70 value 79.817237
iter 80 value 79.429304
iter 90 value 79.260552
iter 100 value 78.976273
final value 78.976273
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 127.143449
iter 10 value 94.101585
iter 20 value 93.496166
iter 30 value 90.022997
iter 40 value 83.533625
iter 50 value 80.496016
iter 60 value 79.694132
iter 70 value 79.333668
iter 80 value 79.269175
iter 90 value 79.147310
iter 100 value 79.097463
final value 79.097463
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.008470
iter 10 value 93.978723
iter 20 value 85.919653
iter 30 value 83.365149
iter 40 value 81.721461
iter 50 value 79.690778
iter 60 value 79.349201
iter 70 value 79.114835
iter 80 value 79.084636
iter 90 value 79.077543
iter 100 value 79.055244
final value 79.055244
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 110.411651
iter 10 value 94.001026
iter 20 value 89.104125
iter 30 value 85.641948
iter 40 value 82.421482
iter 50 value 81.515883
iter 60 value 80.484962
iter 70 value 80.152774
iter 80 value 79.913441
iter 90 value 79.557578
iter 100 value 79.293776
final value 79.293776
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.753798
final value 94.054440
converged
Fitting Repeat 2
# weights: 103
initial value 98.655903
final value 94.054660
converged
Fitting Repeat 3
# weights: 103
initial value 94.903477
iter 10 value 94.054605
iter 20 value 94.038580
final value 94.038577
converged
Fitting Repeat 4
# weights: 103
initial value 94.986702
final value 94.054455
converged
Fitting Repeat 5
# weights: 103
initial value 96.083219
final value 94.054518
converged
Fitting Repeat 1
# weights: 305
initial value 109.833161
iter 10 value 94.042860
iter 20 value 92.970462
iter 30 value 90.530227
iter 40 value 82.397603
iter 50 value 80.307341
iter 60 value 79.214108
iter 70 value 79.067850
iter 80 value 79.057822
iter 90 value 78.819342
iter 100 value 78.383584
final value 78.383584
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.415137
iter 10 value 94.057546
iter 20 value 90.056182
iter 30 value 85.431783
iter 40 value 85.185336
iter 50 value 85.185192
iter 50 value 85.185191
iter 50 value 85.185191
final value 85.185191
converged
Fitting Repeat 3
# weights: 305
initial value 95.324333
iter 10 value 94.056909
iter 20 value 93.967456
iter 30 value 84.571132
iter 40 value 84.355188
iter 50 value 84.352969
iter 60 value 84.351361
iter 70 value 84.329850
iter 80 value 82.192843
iter 90 value 81.978811
iter 100 value 81.978585
final value 81.978585
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.160893
iter 10 value 94.058567
iter 20 value 94.050055
final value 94.039415
converged
Fitting Repeat 5
# weights: 305
initial value 103.706542
iter 10 value 94.043010
iter 20 value 94.021787
iter 30 value 90.302659
iter 40 value 84.316221
iter 50 value 84.217522
final value 84.217262
converged
Fitting Repeat 1
# weights: 507
initial value 116.803008
iter 10 value 93.970435
iter 20 value 93.969751
iter 30 value 93.892101
iter 40 value 92.738124
iter 50 value 92.631294
iter 60 value 92.621618
iter 70 value 92.621380
final value 92.621378
converged
Fitting Repeat 2
# weights: 507
initial value 106.903544
iter 10 value 93.969943
iter 20 value 93.963382
final value 93.963354
converged
Fitting Repeat 3
# weights: 507
initial value 97.758461
iter 10 value 92.996198
iter 20 value 92.947377
iter 30 value 92.897379
iter 40 value 92.773093
iter 50 value 92.465222
iter 60 value 92.178751
iter 70 value 92.049637
iter 80 value 92.049492
iter 90 value 92.049322
final value 92.048796
converged
Fitting Repeat 4
# weights: 507
initial value 96.337755
iter 10 value 92.846396
iter 20 value 92.713338
iter 30 value 92.239867
iter 40 value 92.190804
iter 50 value 92.130821
iter 60 value 92.126944
iter 70 value 92.123827
iter 70 value 92.123826
final value 92.123826
converged
Fitting Repeat 5
# weights: 507
initial value 99.521364
iter 10 value 90.405183
iter 20 value 84.311234
iter 30 value 84.210631
iter 40 value 83.892018
iter 50 value 83.808802
iter 60 value 83.769301
iter 70 value 83.660560
iter 80 value 83.659170
iter 90 value 83.658361
iter 100 value 83.545581
final value 83.545581
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 144.839639
iter 10 value 117.211490
iter 20 value 116.894934
iter 30 value 108.655476
iter 40 value 108.529091
final value 108.529076
converged
Fitting Repeat 2
# weights: 305
initial value 132.659330
iter 10 value 117.894937
iter 20 value 117.618047
iter 30 value 106.488196
iter 40 value 103.754839
iter 50 value 101.030543
final value 101.016599
converged
Fitting Repeat 3
# weights: 305
initial value 135.015571
iter 10 value 117.913170
iter 20 value 117.571408
iter 30 value 115.668893
iter 40 value 115.241119
iter 50 value 115.237940
iter 60 value 114.189679
iter 70 value 114.149582
iter 80 value 109.735028
iter 90 value 107.124661
iter 100 value 107.010706
final value 107.010706
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 118.197547
iter 10 value 117.894941
iter 20 value 117.003497
iter 30 value 108.529270
final value 108.529265
converged
Fitting Repeat 5
# weights: 305
initial value 123.904030
iter 10 value 108.243694
iter 20 value 105.366049
iter 30 value 105.359062
iter 40 value 105.336287
iter 50 value 104.235571
iter 60 value 104.027405
iter 70 value 102.003746
iter 80 value 100.082049
iter 90 value 99.477152
iter 100 value 99.416031
final value 99.416031
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Tue Apr 11 21:02:01 2023
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
42.332 2.168 85.267
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 34.810 | 0.568 | 35.379 | |
| FreqInteractors | 0.235 | 0.012 | 0.247 | |
| calculateAAC | 0.026 | 0.016 | 0.043 | |
| calculateAutocor | 0.335 | 0.016 | 0.351 | |
| calculateCTDC | 0.088 | 0.000 | 0.088 | |
| calculateCTDD | 0.620 | 0.008 | 0.628 | |
| calculateCTDT | 0.230 | 0.004 | 0.234 | |
| calculateCTriad | 0.348 | 0.008 | 0.355 | |
| calculateDC | 0.088 | 0.004 | 0.092 | |
| calculateF | 0.291 | 0.004 | 0.294 | |
| calculateKSAAP | 0.088 | 0.008 | 0.097 | |
| calculateQD_Sm | 1.598 | 0.052 | 1.650 | |
| calculateTC | 1.761 | 0.144 | 1.905 | |
| calculateTC_Sm | 0.218 | 0.004 | 0.222 | |
| corr_plot | 34.568 | 0.588 | 35.157 | |
| enrichfindP | 0.449 | 0.013 | 51.136 | |
| enrichfind_hp | 0.045 | 0.000 | 3.007 | |
| enrichplot | 0.281 | 0.012 | 0.293 | |
| filter_missing_values | 0.002 | 0.000 | 0.002 | |
| getFASTA | 0.485 | 0.012 | 5.084 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.000 | 0.002 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.000 | 0.002 | 0.002 | |
| plotPPI | 0.069 | 0.005 | 0.074 | |
| pred_ensembel | 14.111 | 0.676 | 11.030 | |
| var_imp | 37.249 | 1.076 | 38.326 | |