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This page was generated on 2022-03-18 11:07:04 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for brendaDb on riesling1


To the developers/maintainers of the brendaDb package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/brendaDb.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 213/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
brendaDb 1.9.0  (landing page)
Yi Zhou
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/brendaDb
git_branch: master
git_last_commit: 43ec1f1
git_last_commit_date: 2021-10-26 12:53:39 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: brendaDb
Version: 1.9.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL brendaDb
StartedAt: 2022-03-17 15:52:27 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 15:53:38 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 71.2 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL brendaDb
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'brendaDb' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c read_brenda.cpp -o read_brenda.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o brendaDb.dll tmp.def RcppExports.o read_brenda.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-brendaDb/00new/brendaDb/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'brendaDb'
    finding HTML links ... done
    BiocycPathwayEnzymes                    html  
    BiocycPathwayGenes                      html  
    CleanECNumber                           html  
    ConfigBPCores                           html  
    DownloadBrenda                          html  
    ExtractField                            html  
    ID2Enzyme                               html  
    InitBrendaDeprecatedEntry               html  
    InitBrendaEntry                         html  
    ParseGeneric                            html  
    ParseNoDescription                      html  
    ParseProtein                            html  
    ParseProteinNum                         html  
    ParseReaction                           html  
    ParseRecommendedName                    html  
    ParseReference                          html  
    ParseSystematicName                     html  
    PrettyPrintBrendaEntry                  html  
    PrintTreeHelper                         html  
    QueryBrenda                             html  
    QueryBrendaBase                         html  
    ReadBrenda                              html  
    ReadBrendaFile                          html  
    SelectOrganism                          html  
    SeparateEntries                         html  
    SeparateSubentries                      html  
    ShowFields                              html  
    acronyms                                html  
    brendaDb-package                        html  
    print.brenda.entries                    html  
    print.brenda.entry                      html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (brendaDb)
Making 'packages.html' ... done