Wubing Zhang
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/MAGeCKFlute |
| git_branch: master |
| git_last_commit: 85fe2f2 |
| git_last_commit_date: 2022-01-13 06:39:49 -0400 (Thu, 13 Jan 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:54 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MAGeCKFlute package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAGeCKFlute.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1040/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MAGeCKFlute 1.99.2 (landing page) Wubing Zhang
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MAGeCKFlute |
| Version: 1.99.2 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MAGeCKFlute.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MAGeCKFlute_1.99.2.tar.gz |
| StartedAt: 2022-03-17 19:28:25 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:32:36 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 250.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MAGeCKFlute.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MAGeCKFlute.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MAGeCKFlute_1.99.2.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/MAGeCKFlute.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MAGeCKFlute/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MAGeCKFlute' version '1.99.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MAGeCKFlute' can be installed ... OK
* checking installed package size ... NOTE
installed size is 21.0Mb
sub-directories of 1Mb or more:
extdata 20.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
MAView 7.75 0.17 7.92
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbuild/bbs-3.15-bioc/meat/MAGeCKFlute.Rcheck/00check.log'
for details.
MAGeCKFlute.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MAGeCKFlute
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'MAGeCKFlute' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
snapshotDate(): 2022-03-16
** help
*** installing help indices
converting help for package 'MAGeCKFlute'
finding HTML links ... done
BarView html
BatchRemove html
ConsistencyView html
CutoffCalling html
DensityDiffView html
DensityView html
EnrichAB html
EnrichAnalyzer html
EnrichSquare html
EnrichedFilter html
EnrichedGeneView html
EnrichedView html
FluteMLE html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/flutemle.html
FluteRRA html
HeatmapView html
IdentBarView html
IncorporateDepmap html
MAView html
MapRatesView html
NormalizeBeta html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/normalizebeta.html
OmitCommonEssential html
RankView html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/rankview.html
ReadBeta html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/readbeta.html
ReadGMT html
ReadRRA html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/readrra.html
ReadsgRRA html
ResembleDepmap html
ScatterView html
Selector html
SquareView html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/squareview.html
TransGeneID html
ViolinView html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/violinview.html
VolcanoView html
arrangePathview html
enrich.GSE html
enrich.HGT html
enrich.ORT html
getCols html
getGeneAnn html
getOrg html
getOrtAnn html
gsGetter html
hclustView html
loadDepmap html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/LoadDepmap.html
noEnrichPlot html
normalize.loess html
reexports html
retrieve_gs html
sgRankView html
writeGMT html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2022-03-16
** testing if installed package can be loaded from final location
snapshotDate(): 2022-03-16
** testing if installed package keeps a record of temporary installation path
* DONE (MAGeCKFlute)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'PanomiR' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'recount3' is missing or broken
done
MAGeCKFlute.Rcheck/MAGeCKFlute-Ex.timings
| name | user | system | elapsed | |
| BarView | 0.29 | 0.00 | 0.28 | |
| BatchRemove | 1.56 | 0.03 | 1.59 | |
| ConsistencyView | 0.72 | 0.13 | 0.84 | |
| CutoffCalling | 0 | 0 | 0 | |
| DensityDiffView | 0.89 | 0.01 | 0.91 | |
| DensityView | 0.82 | 0.00 | 0.81 | |
| EnrichAnalyzer | 0.01 | 0.00 | 0.00 | |
| EnrichedFilter | 0.02 | 0.00 | 0.01 | |
| EnrichedGeneView | 0 | 0 | 0 | |
| EnrichedView | 0.01 | 0.00 | 0.02 | |
| FluteMLE | 0 | 0 | 0 | |
| FluteRRA | 0 | 0 | 0 | |
| HeatmapView | 0.3 | 0.0 | 0.3 | |
| IdentBarView | 0.14 | 0.00 | 0.14 | |
| IncorporateDepmap | 0.16 | 0.00 | 0.15 | |
| MAView | 7.75 | 0.17 | 7.92 | |
| MapRatesView | 0.32 | 0.00 | 0.33 | |
| NormalizeBeta | 0.66 | 0.02 | 0.67 | |
| OmitCommonEssential | 0 | 0 | 0 | |
| RankView | 0.56 | 0.00 | 0.57 | |
| ReadBeta | 0.22 | 0.02 | 0.23 | |
| ReadRRA | 0.19 | 0.00 | 0.19 | |
| ReadsgRRA | 0 | 0 | 0 | |
| ResembleDepmap | 0.14 | 0.00 | 0.14 | |
| ScatterView | 2.64 | 0.07 | 2.72 | |
| Selector | 0.48 | 0.00 | 0.48 | |
| SquareView | 1.22 | 0.05 | 1.32 | |
| TransGeneID | 1.21 | 0.08 | 1.28 | |
| ViolinView | 0.86 | 0.08 | 0.93 | |
| VolcanoView | 1.40 | 0.06 | 1.47 | |
| arrangePathview | 0.24 | 0.00 | 0.24 | |
| enrich.GSE | 0.01 | 0.00 | 0.01 | |
| enrich.HGT | 1.53 | 0.11 | 1.64 | |
| enrich.ORT | 3.39 | 0.08 | 3.47 | |
| getCols | 0.02 | 0.00 | 0.01 | |
| getGeneAnn | 0 | 0 | 0 | |
| getOrg | 0 | 0 | 0 | |
| getOrtAnn | 0 | 0 | 0 | |
| gsGetter | 0.76 | 0.01 | 0.78 | |
| hclustView | 0.39 | 0.03 | 0.43 | |
| loadDepmap | 0 | 0 | 0 | |
| normalize.loess | 0.85 | 0.02 | 0.86 | |
| sgRankView | 0.10 | 0.00 | 0.11 | |
| writeGMT | 0.04 | 0.00 | 0.03 | |