| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:26 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the decoupleR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/decoupleR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 468/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| decoupleR 2.0.1 (landing page) Pau Badia-i-Mompel
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: decoupleR |
| Version: 2.0.1 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:decoupleR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings decoupleR_2.0.1.tar.gz |
| StartedAt: 2022-04-12 18:20:50 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 18:26:49 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 359.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: decoupleR.Rcheck |
| Warnings: NA |
##############################################################################
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:decoupleR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings decoupleR_2.0.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/decoupleR.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'decoupleR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'decoupleR' version '2.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'decoupleR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
[2022-04-12 18:21:37] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-12 18:21:37] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-12 18:21:37] [TRACE] [OmnipathR] Cache locked: FALSE
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'decoupleR-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_progeny
> ### Title: Pathway RespOnsive GENes for activity inference (PROGENy).
> ### Aliases: get_progeny
>
> ### ** Examples
>
> progeny <- get_progeny(organism='human', top=500)
Error in open.connection(con, "rb") : HTTP error 500.
Calls: get_progeny ... parse_and_simplify -> parseJSON -> parse_con -> open -> open.connection
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'decoupleR-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_progeny
> ### Title: Pathway RespOnsive GENes for activity inference (PROGENy).
> ### Aliases: get_progeny
>
> ### ** Examples
>
> progeny <- get_progeny(organism='human', top=500)
Error in open.connection(con, "rb") : HTTP error 500.
Calls: get_progeny ... parse_and_simplify -> parseJSON -> parse_con -> open -> open.connection
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
12. | +-base::open(con, "rb")
13. | \-base::open.connection(con, "rb")
14. +-dplyr::select(...)
15. +-dplyr::bind_rows(.)
16. | \-rlang::list2(...)
17. +-purrr::map(...)
18. +-dplyr::group_split(.)
19. +-dplyr::group_by(., .data$pathway)
20. +-dplyr::select(...)
21. +-dplyr::mutate(., weight = as.double(.data$weight), p_value = as.double(.data$p_value))
22. \-dplyr::distinct(., .data$pathway, .data$genesymbol, .keep_all = TRUE)
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 32 ]
Error: Test failures
Execution halted
** running tests for arch 'x64' ...
Running 'testthat.R'
ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
12. | +-base::open(con, "rb")
13. | \-base::open.connection(con, "rb")
14. +-dplyr::select(...)
15. +-dplyr::bind_rows(.)
16. | \-rlang::list2(...)
17. +-purrr::map(...)
18. +-dplyr::group_split(.)
19. +-dplyr::group_by(., .data$pathway)
20. +-dplyr::select(...)
21. +-dplyr::mutate(., weight = as.double(.data$weight), p_value = as.double(.data$p_value))
22. \-dplyr::distinct(., .data$pathway, .data$genesymbol, .keep_all = TRUE)
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 32 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 4 ERRORs, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/decoupleR.Rcheck/00check.log'
for details.
decoupleR.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/decoupleR_2.0.1.tar.gz && rm -rf decoupleR.buildbin-libdir && mkdir decoupleR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=decoupleR.buildbin-libdir decoupleR_2.0.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL decoupleR_2.0.1.zip && rm decoupleR_2.0.1.tar.gz decoupleR_2.0.1.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
38 2333k 38 898k 0 0 1475k 0 0:00:01 --:--:-- 0:00:01 1476k
100 2333k 100 2333k 0 0 2064k 0 0:00:01 0:00:01 --:--:-- 2066k
install for i386
* installing *source* package 'decoupleR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'decoupleR'
finding HTML links ... done
check_corr html
convert_f_defaults html
decouple html
decoupleR-package html
dot-decoupler_mat_format html
dot-decoupler_network_format html
dot-fit_preprocessing html
extract_sets html
filt_minsize html
get_dorothea html
get_profile_of html
get_progeny html
get_resource html
get_toy_data html
intersect_regulons html
pipe html
pivot_wider_profile html
randomize_matrix html
rename_net html
run_aucell html
run_consensus html
run_fgsea html
run_gsva html
run_mdt html
run_mlm html
run_ora html
run_udt html
run_ulm html
run_viper html
run_wmean html
run_wsum html
show_methods html
show_resources html
tidyeval html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'decoupleR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'decoupleR' as decoupleR_2.0.1.zip
* DONE (decoupleR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'decoupleR' successfully unpacked and MD5 sums checked
|
decoupleR.Rcheck/tests_i386/testthat.Rout.fail
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(decoupleR)
>
> test_check("decoupleR")
[2022-04-12 18:24:04] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-12 18:24:04] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-12 18:24:04] [TRACE] [OmnipathR] Cache locked: FALSE
[2022-04-12 18:24:08] [TRACE] [OmnipathR] Loaded data from RDS `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/46d37339bbc3f9a05bb89ccb79278cf1233f5cdf-1.rds`.
[2022-04-12 18:24:08] [INFO] [OmnipathR] Loaded from cache: `https://omnipathdb.org/interactions?genesymbols=yes&datasets=dorothea&organisms=9606&dorothea_levels=A,B,C,D&fields=sources,references,curation_effort,dorothea_level&license=academic`
[2022-04-12 18:24:10] [SUCCESS] [OmnipathR] Loaded 278482 interactions from cache.
[2022-04-12 18:24:18] [TRACE] [OmnipathR] Loaded data from RDS `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/ff347dedf78ef5e38c9c6d8eed291fa901aa3791-1.rds`.
[2022-04-12 18:24:18] [INFO] [OmnipathR] Loaded from cache: `https://omnipathdb.org/interactions?genesymbols=yes&datasets=dorothea&organisms=10090&dorothea_levels=A,B,C,D&fields=sources,references,curation_effort,dorothea_level&license=academic`
[2022-04-12 18:24:21] [SUCCESS] [OmnipathR] Loaded 256977 interactions from cache.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 32 ]
== Failed tests ================================================================
-- Error (test-omnipath.R:4:3): test show_resources ----------------------------
Error in `open.connection(con, "rb")`: HTTP error 500.
Backtrace:
x
1. \-decoupleR::show_resources() at test-omnipath.R:4:2
2. \-OmnipathR::get_annotation_resources()
3. \-OmnipathR::get_resources(query_type = "annotations", datasets = dataset)
4. \-jsonlite::fromJSON(txt = "https://omnipathdb.org/resources")
5. \-jsonlite:::parse_and_simplify(...)
6. \-jsonlite:::parseJSON(txt, bigint_as_char)
7. \-jsonlite:::parse_con(txt, bigint_as_char)
8. +-base::open(con, "rb")
9. \-base::open.connection(con, "rb")
-- Error (test-omnipath.R:9:3): test get_resource ------------------------------
Error in `open.connection(con, "rb")`: HTTP error 500.
Backtrace:
x
1. \-decoupleR::get_resource("TFcensus") at test-omnipath.R:9:2
2. +-name %in% show_resources()
3. \-decoupleR::show_resources()
4. \-OmnipathR::get_annotation_resources()
5. \-OmnipathR::get_resources(query_type = "annotations", datasets = dataset)
6. \-jsonlite::fromJSON(txt = "https://omnipathdb.org/resources")
7. \-jsonlite:::parse_and_simplify(...)
8. \-jsonlite:::parseJSON(txt, bigint_as_char)
9. \-jsonlite:::parse_con(txt, bigint_as_char)
10. +-base::open(con, "rb")
11. \-base::open.connection(con, "rb")
-- Error (test-omnipath.R:14:3): test get_progeny human ------------------------
Error in `open.connection(con, "rb")`: HTTP error 500.
Backtrace:
x
1. +-decoupleR::get_progeny(organism = "human") at test-omnipath.R:14:2
2. | +-... %>% ...
3. | \-decoupleR::get_resource("PROGENy")
4. | +-name %in% show_resources()
5. | \-decoupleR::show_resources()
6. | \-OmnipathR::get_annotation_resources()
7. | \-OmnipathR::get_resources(query_type = "annotations", datasets = dataset)
8. | \-jsonlite::fromJSON(txt = "https://omnipathdb.org/resources")
9. | \-jsonlite:::parse_and_simplify(...)
10. | \-jsonlite:::parseJSON(txt, bigint_as_char)
11. | \-jsonlite:::parse_con(txt, bigint_as_char)
12. | +-base::open(con, "rb")
13. | \-base::open.connection(con, "rb")
14. +-dplyr::select(...)
15. +-dplyr::bind_rows(.)
16. | \-rlang::list2(...)
17. +-purrr::map(...)
18. +-dplyr::group_split(.)
19. +-dplyr::group_by(., .data$pathway)
20. +-dplyr::select(...)
21. +-dplyr::mutate(., weight = as.double(.data$weight), p_value = as.double(.data$p_value))
22. \-dplyr::distinct(., .data$pathway, .data$genesymbol, .keep_all = TRUE)
-- Error (test-omnipath.R:19:3): test get_progeny mouse ------------------------
Error in `open.connection(con, "rb")`: HTTP error 500.
Backtrace:
x
1. +-decoupleR::get_progeny(organism = "mouse") at test-omnipath.R:19:2
2. | +-... %>% ...
3. | \-decoupleR::get_resource("PROGENy")
4. | +-name %in% show_resources()
5. | \-decoupleR::show_resources()
6. | \-OmnipathR::get_annotation_resources()
7. | \-OmnipathR::get_resources(query_type = "annotations", datasets = dataset)
8. | \-jsonlite::fromJSON(txt = "https://omnipathdb.org/resources")
9. | \-jsonlite:::parse_and_simplify(...)
10. | \-jsonlite:::parseJSON(txt, bigint_as_char)
11. | \-jsonlite:::parse_con(txt, bigint_as_char)
12. | +-base::open(con, "rb")
13. | \-base::open.connection(con, "rb")
14. +-dplyr::select(...)
15. +-dplyr::bind_rows(.)
16. | \-rlang::list2(...)
17. +-purrr::map(...)
18. +-dplyr::group_split(.)
19. +-dplyr::group_by(., .data$pathway)
20. +-dplyr::select(...)
21. +-dplyr::mutate(., weight = as.double(.data$weight), p_value = as.double(.data$p_value))
22. \-dplyr::distinct(., .data$pathway, .data$genesymbol, .keep_all = TRUE)
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 32 ]
Error: Test failures
Execution halted
|
decoupleR.Rcheck/tests_x64/testthat.Rout.fail
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(decoupleR)
>
> test_check("decoupleR")
[2022-04-12 18:26:04] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-12 18:26:05] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-12 18:26:05] [TRACE] [OmnipathR] Cache locked: FALSE
[2022-04-12 18:26:08] [TRACE] [OmnipathR] Loaded data from RDS `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/46d37339bbc3f9a05bb89ccb79278cf1233f5cdf-1.rds`.
[2022-04-12 18:26:08] [INFO] [OmnipathR] Loaded from cache: `https://omnipathdb.org/interactions?genesymbols=yes&datasets=dorothea&organisms=9606&dorothea_levels=A,B,C,D&fields=sources,references,curation_effort,dorothea_level&license=academic`
[2022-04-12 18:26:10] [SUCCESS] [OmnipathR] Loaded 278482 interactions from cache.
[2022-04-12 18:26:16] [TRACE] [OmnipathR] Loaded data from RDS `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/ff347dedf78ef5e38c9c6d8eed291fa901aa3791-1.rds`.
[2022-04-12 18:26:16] [INFO] [OmnipathR] Loaded from cache: `https://omnipathdb.org/interactions?genesymbols=yes&datasets=dorothea&organisms=10090&dorothea_levels=A,B,C,D&fields=sources,references,curation_effort,dorothea_level&license=academic`
[2022-04-12 18:26:19] [SUCCESS] [OmnipathR] Loaded 256977 interactions from cache.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 32 ]
== Failed tests ================================================================
-- Error (test-omnipath.R:4:3): test show_resources ----------------------------
Error in `open.connection(con, "rb")`: HTTP error 500.
Backtrace:
x
1. \-decoupleR::show_resources() at test-omnipath.R:4:2
2. \-OmnipathR::get_annotation_resources()
3. \-OmnipathR::get_resources(query_type = "annotations", datasets = dataset)
4. \-jsonlite::fromJSON(txt = "https://omnipathdb.org/resources")
5. \-jsonlite:::parse_and_simplify(...)
6. \-jsonlite:::parseJSON(txt, bigint_as_char)
7. \-jsonlite:::parse_con(txt, bigint_as_char)
8. +-base::open(con, "rb")
9. \-base::open.connection(con, "rb")
-- Error (test-omnipath.R:9:3): test get_resource ------------------------------
Error in `open.connection(con, "rb")`: HTTP error 500.
Backtrace:
x
1. \-decoupleR::get_resource("TFcensus") at test-omnipath.R:9:2
2. +-name %in% show_resources()
3. \-decoupleR::show_resources()
4. \-OmnipathR::get_annotation_resources()
5. \-OmnipathR::get_resources(query_type = "annotations", datasets = dataset)
6. \-jsonlite::fromJSON(txt = "https://omnipathdb.org/resources")
7. \-jsonlite:::parse_and_simplify(...)
8. \-jsonlite:::parseJSON(txt, bigint_as_char)
9. \-jsonlite:::parse_con(txt, bigint_as_char)
10. +-base::open(con, "rb")
11. \-base::open.connection(con, "rb")
-- Error (test-omnipath.R:14:3): test get_progeny human ------------------------
Error in `open.connection(con, "rb")`: HTTP error 500.
Backtrace:
x
1. +-decoupleR::get_progeny(organism = "human") at test-omnipath.R:14:2
2. | +-... %>% ...
3. | \-decoupleR::get_resource("PROGENy")
4. | +-name %in% show_resources()
5. | \-decoupleR::show_resources()
6. | \-OmnipathR::get_annotation_resources()
7. | \-OmnipathR::get_resources(query_type = "annotations", datasets = dataset)
8. | \-jsonlite::fromJSON(txt = "https://omnipathdb.org/resources")
9. | \-jsonlite:::parse_and_simplify(...)
10. | \-jsonlite:::parseJSON(txt, bigint_as_char)
11. | \-jsonlite:::parse_con(txt, bigint_as_char)
12. | +-base::open(con, "rb")
13. | \-base::open.connection(con, "rb")
14. +-dplyr::select(...)
15. +-dplyr::bind_rows(.)
16. | \-rlang::list2(...)
17. +-purrr::map(...)
18. +-dplyr::group_split(.)
19. +-dplyr::group_by(., .data$pathway)
20. +-dplyr::select(...)
21. +-dplyr::mutate(., weight = as.double(.data$weight), p_value = as.double(.data$p_value))
22. \-dplyr::distinct(., .data$pathway, .data$genesymbol, .keep_all = TRUE)
-- Error (test-omnipath.R:19:3): test get_progeny mouse ------------------------
Error in `open.connection(con, "rb")`: HTTP error 500.
Backtrace:
x
1. +-decoupleR::get_progeny(organism = "mouse") at test-omnipath.R:19:2
2. | +-... %>% ...
3. | \-decoupleR::get_resource("PROGENy")
4. | +-name %in% show_resources()
5. | \-decoupleR::show_resources()
6. | \-OmnipathR::get_annotation_resources()
7. | \-OmnipathR::get_resources(query_type = "annotations", datasets = dataset)
8. | \-jsonlite::fromJSON(txt = "https://omnipathdb.org/resources")
9. | \-jsonlite:::parse_and_simplify(...)
10. | \-jsonlite:::parseJSON(txt, bigint_as_char)
11. | \-jsonlite:::parse_con(txt, bigint_as_char)
12. | +-base::open(con, "rb")
13. | \-base::open.connection(con, "rb")
14. +-dplyr::select(...)
15. +-dplyr::bind_rows(.)
16. | \-rlang::list2(...)
17. +-purrr::map(...)
18. +-dplyr::group_split(.)
19. +-dplyr::group_by(., .data$pathway)
20. +-dplyr::select(...)
21. +-dplyr::mutate(., weight = as.double(.data$weight), p_value = as.double(.data$p_value))
22. \-dplyr::distinct(., .data$pathway, .data$genesymbol, .keep_all = TRUE)
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 32 ]
Error: Test failures
Execution halted
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decoupleR.Rcheck/examples_i386/decoupleR-Ex.timings
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decoupleR.Rcheck/examples_x64/decoupleR-Ex.timings
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