| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:17 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the CATALYST package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CATALYST.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 249/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CATALYST 1.18.1 (landing page) Helena L. Crowell
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CATALYST |
| Version: 1.18.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CATALYST_1.18.1.tar.gz && rm -rf CATALYST.buildbin-libdir && mkdir CATALYST.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CATALYST.buildbin-libdir CATALYST_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CATALYST_1.18.1.zip && rm CATALYST_1.18.1.tar.gz CATALYST_1.18.1.zip |
| StartedAt: 2022-04-12 07:40:53 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:41:55 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 62.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CATALYST_1.18.1.tar.gz && rm -rf CATALYST.buildbin-libdir && mkdir CATALYST.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CATALYST.buildbin-libdir CATALYST_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CATALYST_1.18.1.zip && rm CATALYST_1.18.1.tar.gz CATALYST_1.18.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
78 3591k 78 2815k 0 0 2988k 0 0:00:01 --:--:-- 0:00:01 2989k
100 3591k 100 3591k 0 0 3234k 0 0:00:01 0:00:01 --:--:-- 3235k
install for i386
* installing *source* package 'CATALYST' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CATALYST'
finding HTML links ... done
SCE-accessors html
finding level-2 HTML links ... done
adaptSpillmat html
applyCutoffs html
assignPrelim html
clrDR html
cluster html
compCytof html
computeSpillmat html
data html
estCutoffs html
extractClusters html
filterSCE html
guessPanel html
mergeClusters html
normCytof html
pbMDS html
plotAbundances html
plotClusterExprs html
plotClusterHeatmap html
plotCodes html
plotCounts html
plotDR html
plotDiffHeatmap html
plotEvents html
plotExprHeatmap html
plotExprs html
plotFreqHeatmap html
plotMahal html
plotMultiHeatmap html
plotNRS html
plotPbExprs html
plotScatter html
plotSpillmat html
plotYields html
prepData html
runDR html
sce2fcs html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CATALYST' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CATALYST' as CATALYST_1.18.1.zip
* DONE (CATALYST)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'CATALYST' successfully unpacked and MD5 sums checked