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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/muscat_1.4.0.tar.gz && rm -rf muscat.buildbin-libdir && mkdir muscat.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=muscat.buildbin-libdir muscat_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL muscat_1.4.0.zip && rm muscat_1.4.0.tar.gz muscat_1.4.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2028k  100 2028k    0     0  40.2M      0 --:--:-- --:--:-- --:--:-- 41.2M

install for i386

* installing *source* package 'muscat' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning in checkMatrixPackageVersion() :
  Package version inconsistency detected.
TMB was built with Matrix version 1.3.2
Current Matrix version is 1.3.3
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
** help
*** installing help indices
  converting help for package 'muscat'
    finding HTML links ... done
    aggregateData                           html  
    calcExprFreqs                           html  
    data                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpe2P6JZ/R.INSTALL2b3c3596941/muscat/man/data.Rd:26: file link 'logNormCounts' in package 'scater' does not exist and so has been treated as a topic
    mmDS                                    html  
    pbDS                                    html  
    pbFlatten                               html  
    pbHeatmap                               html  
    finding level-2 HTML links ... done

    pbMDS                                   html  
    prepSCE                                 html  
    prepSim                                 html  
    resDS                                   html  
    simData                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in checkMatrixPackageVersion() :
  Package version inconsistency detected.
TMB was built with Matrix version 1.3.2
Current Matrix version is 1.3.3
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
** testing if installed package can be loaded from final location
Warning in checkMatrixPackageVersion() :
  Package version inconsistency detected.
TMB was built with Matrix version 1.3.2
Current Matrix version is 1.3.3
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'muscat' ...
** testing if installed package can be loaded
Warning in checkMatrixPackageVersion() :
  Package version inconsistency detected.
TMB was built with Matrix version 1.3.2
Current Matrix version is 1.3.3
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
* MD5 sums
packaged installation of 'muscat' as muscat_1.4.0.zip
* DONE (muscat)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'muscat' successfully unpacked and MD5 sums checked