| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:29:25 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the TFHAZ package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1853/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TFHAZ 1.12.0 (landing page) Alberto Marchesi
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: TFHAZ |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:TFHAZ.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings TFHAZ_1.12.0.tar.gz |
| StartedAt: 2021-05-06 06:37:57 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 06:39:48 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 110.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TFHAZ.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:TFHAZ.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings TFHAZ_1.12.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/TFHAZ.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TFHAZ/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TFHAZ’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TFHAZ’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
accumulation 8.264 0.020 8.300
dense_zones 8.072 0.012 8.098
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
TFHAZ.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL TFHAZ ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘TFHAZ’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TFHAZ)
TFHAZ.Rcheck/TFHAZ-Ex.timings
| name | user | system | elapsed | |
| Ishikawa | 0.124 | 0.028 | 0.156 | |
| TF_acc_w_0 | 0.116 | 0.004 | 0.121 | |
| TF_dense_w_0 | 0.272 | 0.024 | 0.298 | |
| TF_dense_w_10 | 0.276 | 0.036 | 0.311 | |
| TF_dense_w_100 | 0.280 | 0.028 | 0.310 | |
| TF_dense_w_1000 | 0.276 | 0.000 | 0.279 | |
| TF_dense_w_10000 | 0.332 | 0.000 | 0.333 | |
| accumulation | 8.264 | 0.020 | 8.300 | |
| base_dense_w_10 | 0.264 | 0.000 | 0.265 | |
| dense_zones | 8.072 | 0.012 | 8.098 | |
| high_accumulation_zones | 0.444 | 0.012 | 0.458 | |
| n_zones_PCA | 0.044 | 0.000 | 0.045 | |
| plot_accumulation | 0 | 0 | 0 | |
| plot_n_zones | 0.012 | 0.000 | 0.012 | |
| reg_dense_w_10 | 0.260 | 0.000 | 0.261 | |
| w_analysis | 0.016 | 0.000 | 0.014 | |