| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:28:43 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the RadioGx package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1445/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RadioGx 1.0.0 (landing page) Benjamin Haibe-Kains
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: RadioGx |
| Version: 1.0.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:RadioGx.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings RadioGx_1.0.0.tar.gz |
| StartedAt: 2021-05-06 04:56:39 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 05:00:33 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 234.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RadioGx.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:RadioGx.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings RadioGx_1.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/RadioGx.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RadioGx/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RadioGx’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RadioGx’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
Note: found 14 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
RadioSet-class 10.94 0.232 11.259
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.12-bioc/meat/RadioGx.Rcheck/00check.log’
for details.
RadioGx.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL RadioGx ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘RadioGx’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RadioGx)
RadioGx.Rcheck/RadioGx-Ex.timings
| name | user | system | elapsed | |
| RadioSet-class | 10.940 | 0.232 | 11.259 | |
| availableRSets | 0 | 0 | 0 | |
| checkRSetStructure | 0.480 | 0.004 | 0.487 | |
| computeAUC | 0.004 | 0.000 | 0.004 | |
| computeD10 | 0.004 | 0.000 | 0.001 | |
| computeSF2 | 0 | 0 | 0 | |
| dim-RadioSet-method | 0.460 | 0.008 | 0.468 | |
| doseResponseCurve | 0.116 | 0.004 | 0.118 | |
| downloadRSet | 0.000 | 0.000 | 0.001 | |
| linearQuadraticModel | 0.008 | 0.000 | 0.006 | |
| mDataNames-RadioSet-method | 0.004 | 0.000 | 0.003 | |
| plotCurve | 0.032 | 0.004 | 0.035 | |
| radSensitivitySig | 2.412 | 0.452 | 2.905 | |
| radiationInfo-set | 0 | 0 | 0 | |
| radiationInfo | 0.000 | 0.000 | 0.001 | |
| radiationTypes-set | 0.004 | 0.000 | 0.004 | |
| radiationTypes | 0.376 | 0.020 | 0.394 | |
| show-RadioSet-method | 0.456 | 0.004 | 0.462 | |
| show-RadioSig-method | 1.336 | 0.180 | 1.536 | |
| showSigAnnot-RadioSig-method | 0.764 | 0.096 | 0.868 | |
| subsetTo-RadioSet-method | 0.180 | 0.016 | 0.197 | |
| summarizeMolecularProfiles-RadioSet-method | 0.680 | 0.036 | 0.716 | |
| summarizeSensitivityProfiles-RadioSet-method | 0.372 | 0.000 | 0.372 | |